Carg05856-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05856-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 4893081 .. 4894091 (-)
Sequence length216
RNA-Seq ExpressionCarg05856-RA
SyntenyCarg05856-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCTGCCGGTGTATGTTTCTGTTCATCGAATGATTTTGATTTCCCCGTTGAAATTCGGTCTGAATTTGGAAGAATCCTGATTCAATATTACCGTCTCTCACTGTTCAAGTGTCCATCATATTTCACCTTACCGATCGGTTCGGCTAGTTTAATGTAATATGAAATCTCGAACCAATTGGGCCGGGCAAAGGCTACTCGCCATGGGAGCCCATCCAACACTGTTGGGCCAAGCAGGCAGCTCTGACTTTTAACCCATAGGCATCACCCCCTCATTTTTTTCTTCGTCTCAGCTGCAAATTTCTAAGGACTTCTACTCGGATCTCTGAGCTTCGACAGGTTATTTGACCCTTCTGTGCACACCTCCTGTATTTCCAGCGCCGATAATCCCCATTGGATCACGTTATTAATCTTTTTCTTATGTACTTTTGGTTCCTTCTTCGTTATCTGATTTTCTCCATGGATCTAAGCTTTCTCCTCCTCTTTGTTTTCACTTTTCGGGCTAGGTTTTATATGCGTCTCATGACATGTTTTAAATCTAGTTTGTAGCTTTCATTTTTTGTGCTTATCTCTACACCTTTGTGATAGGATAATTTTGGCAATTCTTTCGTGTAAAAGTGTATGTTCCATGACATGGGATTTTGATTTGTTTTGAATGTTGATACATATAAGATTGGGTTCGAAGCTTTAATAGTTTGTCAAGATGGTTAAAAAAAGTGGATTTTTCTTGCACTGAAATTGATAATTCCGTTATATTTCTACAAACATATTTGGTGGCATTTATTCTGTAATTAGTAGAAATTTTTTATTGGAAGTAAGTGTGTATGCACTTTCTCTATCTTCCTTTTGAAGTTATCAGTTATGTAATTTGTGGTTGATACACCTTGTTTATTAATTCTCTCTTCTCACTCTCTGTAATTACTGGAACAGTGTATATGTTTTTTAGGTTCTCCATTCTTACTAATTTTGTCTTCATTTCTTTGTGAATAATTTGTAGAACTCGTAA

mRNA sequence

ATGGCGATGGCTGCCGGTGTATGTTTCTGTTCATCGAATGATTTTGATTTCCCCGTTGAAATTCGGTCTGAATTTGGAAGAATCCTGATTCAATATTACCGTCTCTCACTGTTCAAGTGTCCATCATATTTCACCTTACCGATCGGTTCGGCTAGTTTAATCTGCAAATTTCTAAGGACTTCTACTCGGATCTCTGAGCTTCGACAGAACTCGTAA

Coding sequence (CDS)

ATGGCGATGGCTGCCGGTGTATGTTTCTGTTCATCGAATGATTTTGATTTCCCCGTTGAAATTCGGTCTGAATTTGGAAGAATCCTGATTCAATATTACCGTCTCTCACTGTTCAAGTGTCCATCATATTTCACCTTACCGATCGGTTCGGCTAGTTTAATCTGCAAATTTCTAAGGACTTCTACTCGGATCTCTGAGCTTCGACAGAACTCGTAA

Protein sequence

MAMAAGVCFCSSNDFDFPVEIRSEFGRILIQYYRLSLFKCPSYFTLPIGSASLICKFLRTSTRISELRQNS
Homology
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BLAST of Carg05856-RA vs. NCBI nr
Match: KAG7015422.1 (hypothetical protein SDJN02_23058, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 9.6e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MAMAAGVCFCSSNDFDFPVEIRSEFGRILIQYYRLSLFKCPSYFTLPIGSASLICKFLRT 60
          MAMAAGVCFCSSNDFDFPVEIRSEFGRILIQYYRLSLFKCPSYFTLPIGSASLICKFLRT
Sbjct: 1  MAMAAGVCFCSSNDFDFPVEIRSEFGRILIQYYRLSLFKCPSYFTLPIGSASLICKFLRT 60

Query: 61 STRISELRQNS 72
          STRISELRQNS
Sbjct: 61 STRISELRQNS 71

The following BLAST results are available for this feature:
BLAST of Carg05856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015422.19.6e-32100.00hypothetical protein SDJN02_23058, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05856-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05856Carg05856gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05856-RA:3Carg05856-RA:3exon
Carg05856-RA:2Carg05856-RA:2exon
Carg05856-RA:1Carg05856-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05856-RA:cdsCarg05856-RA:cds_3CDS
Carg05856-RA:cdsCarg05856-RA:cds_2CDS
Carg05856-RA:cdsCarg05856-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05856-RACarg05856-RA-proteinpolypeptide