Carg05668-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05668-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B-box-type zinc finger
Location	Carg_Chr16: 3663625 .. 3665406 (+)
Sequence length	1422
RNA-Seq Expression	Carg05668-RA
Synteny	Carg05668-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGTGCGAGCTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGCCGTAGAGATAACGAGGAGAAAGTTAATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGGGAGCTATGAGGGAGGTGATAGTGAGGATGCTGATGAGGATGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGATGAAGATGGAGAAAACCAGGTGGTTCCGTGGTCTTGTGCGTCTTCTTCGACTCCACCACCACCACCGACAGTGACTTCTAGCAGCGAGGGCGAGATGTCAGCTTGCGCTGGTGGCGTATCGAAGCGGAGGAGAGAGTACGACGTCGATCTCGATTCCGATGTATGTATTAATGGATTTTTCTTCTTTTGCTGCTTTCTTTTCTTTTATGTTCTTATTTTCCTTGTCTGTGCGGAAGGAAAACGTTGTGGATTTGGAATCCCTTTGTCCGTTCATTTGCTTGTCTAGAATCGGTGTTTTGAAAATATGATAGCGATTTCGGTTCTCTTAGTGAGTGAAAACTCAAGATTAGAGCCGAATCTCTCTATTTCATAAACGATACGAATTTCATCCTTCAGAACCTATGATTTTGCACATAATCATTTTTGATATCCCGATCTGAAACATCATCAACATTCTCTGAGTTGTTAATTCCCAGTGATCCAAACAGGATTTTAACAATCGTTTGCCGTTTGAATGCAGGACGAGTTCGAGTGTTCTTCTGCTCAACAACGAACCAGGCCTTCTTACAACGACGAAGCGACTTCCTCTACTTCCCACAGGCCACCGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCAGCATCATCCCCGATGATGAAGCTCGTAAAGCAGATTTAAAATCCACGACTGTCATTAGATCGATCCAGAGTCTCCAGAATCGTCTGCCCACCGGTATCAACGATGCTTCCAAACTGATTTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGATCCTTCACTGACAACACAACGGAGGTAGCTAGGTTTTTGAAATCCTTTTGGGTTTCATCTTTTTTTATTTTTCTTCTTCTCACTAATGGTCTGTCCTGATCGATTAATTCTAGGATTATATTTGTTTACTCAACTATGTACAACCTGGAATACCCCTCTATTTTCCATTAGATCATCTGTTATCATTTGTGAAGCCTTGTCATGTTTAGCCAGATATTAATTCACTGAACCACATTCTATTAACAGATTTCTCCACACTTGTTGAGTCTTTTGCTGATCCATATCTCAGTCAATGTTAGTTAGTTGTTCATAGGAGAGATTCTCGCGTTTTAGTTGAGTTTTGTAGGCCTCCCACGACCAGGAGATATGAACATGAATGGTCTCAAAACTTTAATCATTACTAAACCCATATCACCATATCTCGTTTAGAAGCCATCGTCATCATCTCCCACAACCCCACATTTTTTTAGGTCCAGGAAGCCACTTTTAGGGATTATTTTGCATATTCAAGATCGAATTGAAAGTAATCATATCTCCTGATATTATTTAATCTCCTCCAATCCTCCTTTTGCT

mRNA sequence

ATGATGAAGTGCGAGCTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGCCGTAGAGATAACGAGGAGAAAGTTAATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGGGAGCTATGAGGGAGGTGATAGTGAGGATGCTGATGAGGATGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGATGAAGATGGAGAAAACCAGGTGGTTCCGTGGTCTTGTGCGTCTTCTTCGACTCCACCACCACCACCGACAGTGACTTCTAGCAGCGAGGGCGAGATGTCAGCTTGCGCTGGTGGCGTATCGAAGCGGAGGAGAGAGTACGACGTCGATCTCGATTCCGATGACGAGTTCGAGTGTTCTTCTGCTCAACAACGAACCAGGCCTTCTTACAACGACGAAGCGACTTCCTCTACTTCCCACAGGCCACCGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCAGCATCATCCCCGATGATGAAGCTCGTAAAGCAGATTTAAAATCCACGACTGTCATTAGATCGATCCAGAGTCTCCAGAATCGTCTGCCCACCGGTATCAACGATGCTTCCAAACTGATTTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGATCCTTCACTGACAACACAACGGAGGTAGCTAGGTTTTTGAAATCCTTTTGGGTTTCATCTTTTTTTATTTTTCTTCTTCTCACTAATGGTCTGTCCTGATCGATTAATTCTAGGATTATATTTGTTTACTCAACTATGTACAACCTGGAATACCCCTCTATTTTCCATTAGATCATCTGTTATCATTTGTGAAGCCTTGTCATGTTTAGCCAGATATTAATTCACTGAACCACATTCTATTAACAGATTTCTCCACACTTGTTGAGTCTTTTGCTGATCCATATCTCAGTCAATGTTAGTTAGTTGTTCATAGGAGAGATTCTCGCGTTTTAGTTGAGTTTTGTAGGCCTCCCACGACCAGGAGATATGAACATGAATGGTCTCAAAACTTTAATCATTACTAAACCCATATCACCATATCTCGTTTAGAAGCCATCGTCATCATCTCCCACAACCCCACATTTTTTTAGGTCCAGGAAGCCACTTTTAGGGATTATTTTGCATATTCAAGATCGAATTGAAAGTAATCATATCTCCTGATATTATTTAATCTCCTCCAATCCTCCTTTTGCT

Coding sequence (CDS)

ATGATGAAGTGCGAGCTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGCCGTAGAGATAACGAGGAGAAAGTTAATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGGGAGCTATGAGGGAGGTGATAGTGAGGATGCTGATGAGGATGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGATGAAGATGGAGAAAACCAGGTGGTTCCGTGGTCTTGTGCGTCTTCTTCGACTCCACCACCACCACCGACAGTGACTTCTAGCAGCGAGGGCGAGATGTCAGCTTGCGCTGGTGGCGTATCGAAGCGGAGGAGAGAGTACGACGTCGATCTCGATTCCGATGACGAGTTCGAGTGTTCTTCTGCTCAACAACGAACCAGGCCTTCTTACAACGACGAAGCGACTTCCTCTACTTCCCACAGGCCACCGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCAGCATCATCCCCGATGATGAAGCTCGTAAAGCAGATTTAAAATCCACGACTGTCATTAGATCGATCCAGAGTCTCCAGAATCGTCTGCCCACCGGTATCAACGATGCTTCCAAACTGATTTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA

Protein sequence

MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDADEDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRREYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARKADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR

Homology

[Close]

BLAST of Carg05668-RA vs. NCBI nr
Match: KAG6607840.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015238.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 548.9 bits (1413), Expect = 2.6e-152
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR
Sbjct: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR
Sbjct: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK
Sbjct: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR
Sbjct: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 282

[Close]

BLAST of Carg05668-RA vs. NCBI nr
Match: XP_022941291.1 (histone H3.v1-like [Cucurbita moschata])

HSP 1 Score: 528.5 bits (1360), Expect = 3.6e-146
Identity = 274/282 (97.16%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR
Sbjct: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVH GK EQGGFQERRRDNE +VNGGDDFDDGEGFGSYEGGDSEDAD
Sbjct: 61  KLTPTVSVCEGCVEVHCGKWEQGGFQERRRDNEVEVNGGDDFDDGEGFGSYEGGDSEDAD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           EDDDEEEEEEEE EEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR
Sbjct: 121 EDDDEEEEEEEEAEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           EYDVDLDSDDEFECSSAQQ TRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK
Sbjct: 181 EYDVDLDSDDEFECSSAQQGTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKST VIRSIQSLQNRLPTGINDASKLIFGICK+SRDQNR
Sbjct: 241 ADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKISRDQNR 282

[Close]

BLAST of Carg05668-RA vs. NCBI nr
Match: XP_022981574.1 (histone H3.v1-like [Cucurbita maxima])

HSP 1 Score: 519.2 bits (1336), Expect = 2.2e-143
Identity = 270/282 (95.74%), Postives = 274/282 (97.16%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR
Sbjct: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCEQGG+QERRRDNEE+VN GDDFDDGEGFGSYEGGDSED D
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGGYQERRRDNEEEVNDGDDFDDGEGFGSYEGGDSEDDD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           EDDD EEE  EEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRR+
Sbjct: 121 EDDD-EEEAVEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRK 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           EYDVDLDS+DEFECSSAQQ TRPSYNDEATSSTSHRP KQARVTGPTQSASIIPDDEARK
Sbjct: 181 EYDVDLDSEDEFECSSAQQGTRPSYNDEATSSTSHRPLKQARVTGPTQSASIIPDDEARK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKST VIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR
Sbjct: 241 ADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 281

[Close]

BLAST of Carg05668-RA vs. NCBI nr
Match: XP_022936446.1 (protein BFR2 [Cucurbita moschata])

HSP 1 Score: 440.3 bits (1131), Expect = 1.3e-119
Identity = 231/283 (81.63%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           M KCELCGQ AR FCESD+ANLCWDCDE VHCANFLVAKHSRSLLC ACQSPTPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCE+G + ERRRDNEE+V+ GDDFDDGEGF SYEGGDSE+ +
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEEGRYLERRRDNEEEVDDGDDFDDGEGFESYEGGDSEEDE 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           +DDD+EEEEEEEEE+DEDGENQVVPWSCASSS+PPPPPTVTSSSEGE+S  AG  SKR R
Sbjct: 121 DDDDDEEEEEEEEEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSAS-IIPDDEAR 240
           E DVDL+SDD+ ECSSA+Q TRP +N+EATSS+SHRP KQARVTGPTQS S    DDEA 
Sbjct: 181 ECDVDLESDDDIECSSARQGTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTADDEAY 240

Query: 241 KADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           KADLKS +V+RSIQ LQNR PT INDASK+IFGICKMSRDQNR
Sbjct: 241 KADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 283

[Close]

BLAST of Carg05668-RA vs. NCBI nr
Match: XP_023535120.1 (protein BFR2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.6 bits (1124), Expect = 8.3e-119
Identity = 229/283 (80.92%), Postives = 251/283 (88.69%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           M KCELCGQ AR FCESD+ANLCWDCDE VHCANFLVAKHSRSLLC ACQSPTPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCE+G + ERRRDNEE+V+ GDDFDDGEGFGSYEGGDS    
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEEGRYLERRRDNEEEVDDGDDFDDGEGFGSYEGGDS---- 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           E+DD+++EEEEE+E+DEDGENQVVPWSCASSS+PPPPPTVTSSSEGE+S  AG  SKR R
Sbjct: 121 EEDDDDDEEEEEDEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSAS-IIPDDEAR 240
           E DVDL+SDD+ ECSSA+Q TRP +N+EATSS+SHRP KQARVTGPTQS S   PDDEA 
Sbjct: 181 ECDVDLESDDDIECSSARQSTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTPDDEAY 240

Query: 241 KADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           KADLKS +V+RSIQ LQNR PT INDASK+IFGICKMSRDQNR
Sbjct: 241 KADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 279

[Close]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot
Match: O23379 (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 3  KCELCG-QLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQ-SPTPWTASGR 62
          +C+ CG + A  +C+SD A LC +CD  VH AN L  +H+RSLLC  C   PT    +  
Sbjct: 4  RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPT----AVH 63

Query: 63 KLTPTVSVCEGC 73
           +   VS+C+GC
Sbjct: 64 CMNENVSLCQGC 71

[Close]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 2  MKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPT 54
          + CELCG+ A  +CE+D A LC  CD  VH ANFL  +H R ++C  C+  T
Sbjct: 30 VSCELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81

[Close]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot
Match: Q9LUA9 (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-08
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 4  CELCG-QLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKL 63
          C+ CG Q +  +C SD A LC  CD  VH AN L  +HSR+L+C  C +     AS R  
Sbjct: 5  CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQ---PASVRCS 64

Query: 64 TPTVSVCEGC 73
             VS+C+ C
Sbjct: 65 DERVSLCQNC 71

[Close]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot
Match: Q9SSE5 (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-08
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 4  CELCG-QLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKL 63
          C+ CG Q +  +C SD A LC  CD  VH AN L  +HSR+L+C  C +     A+ R +
Sbjct: 5  CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQ---PATVRCV 64

Query: 64 TPTVSVCEGC 73
             VS+C+ C
Sbjct: 65 EERVSLCQNC 71

[Close]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-08
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 2  MKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPT 54
          ++CELC   A  FCE+D A LC  CD  VH ANFL  +H R +LC +CQ  T
Sbjct: 29 VRCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80

[Close]

BLAST of Carg05668-RA vs. ExPASy TrEMBL
Match: A0A6J1FKQ3 (histone H3.v1-like OS=Cucurbita moschata OX=3662 GN=LOC111446633 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.7e-146
Identity = 274/282 (97.16%), Postives = 276/282 (97.87%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR
Sbjct: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVH GK EQGGFQERRRDNE +VNGGDDFDDGEGFGSYEGGDSEDAD
Sbjct: 61  KLTPTVSVCEGCVEVHCGKWEQGGFQERRRDNEVEVNGGDDFDDGEGFGSYEGGDSEDAD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           EDDDEEEEEEEE EEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR
Sbjct: 121 EDDDEEEEEEEEAEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           EYDVDLDSDDEFECSSAQQ TRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK
Sbjct: 181 EYDVDLDSDDEFECSSAQQGTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKST VIRSIQSLQNRLPTGINDASKLIFGICK+SRDQNR
Sbjct: 241 ADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKISRDQNR 282

[Close]

BLAST of Carg05668-RA vs. ExPASy TrEMBL
Match: A0A6J1J288 (histone H3.v1-like OS=Cucurbita maxima OX=3661 GN=LOC111480652 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.1e-143
Identity = 270/282 (95.74%), Postives = 274/282 (97.16%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR
Sbjct: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCEQGG+QERRRDNEE+VN GDDFDDGEGFGSYEGGDSED D
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGGYQERRRDNEEEVNDGDDFDDGEGFGSYEGGDSEDDD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           EDDD EEE  EEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRR+
Sbjct: 121 EDDD-EEEAVEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRK 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           EYDVDLDS+DEFECSSAQQ TRPSYNDEATSSTSHRP KQARVTGPTQSASIIPDDEARK
Sbjct: 181 EYDVDLDSEDEFECSSAQQGTRPSYNDEATSSTSHRPLKQARVTGPTQSASIIPDDEARK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKST VIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR
Sbjct: 241 ADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 281

[Close]

BLAST of Carg05668-RA vs. ExPASy TrEMBL
Match: A0A6J1F7H6 (protein BFR2 OS=Cucurbita moschata OX=3662 GN=LOC111443061 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 6.2e-120
Identity = 231/283 (81.63%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           M KCELCGQ AR FCESD+ANLCWDCDE VHCANFLVAKHSRSLLC ACQSPTPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCE+G + ERRRDNEE+V+ GDDFDDGEGF SYEGGDSE+ +
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEEGRYLERRRDNEEEVDDGDDFDDGEGFESYEGGDSEEDE 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           +DDD+EEEEEEEEE+DEDGENQVVPWSCASSS+PPPPPTVTSSSEGE+S  AG  SKR R
Sbjct: 121 DDDDDEEEEEEEEEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSAS-IIPDDEAR 240
           E DVDL+SDD+ ECSSA+Q TRP +N+EATSS+SHRP KQARVTGPTQS S    DDEA 
Sbjct: 181 ECDVDLESDDDIECSSARQGTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTADDEAY 240

Query: 241 KADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           KADLKS +V+RSIQ LQNR PT INDASK+IFGICKMSRDQNR
Sbjct: 241 KADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 283

[Close]

BLAST of Carg05668-RA vs. ExPASy TrEMBL
Match: A0A6J1CD44 (protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.9e-116
Identity = 227/282 (80.50%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           M KCELCGQ AR FCESD+ANLCWDCDEKVHCANFLVAKHSRSLLC  CQSPTPWTASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWTASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVHGGKCEQG +QERRRDNE+ V+ GDD +DGEGF SYEGGDSE+ D
Sbjct: 61  KLTPTVSVCEGCVEVHGGKCEQGAYQERRRDNEDVVDDGDDLEDGEGFESYEGGDSEEDD 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           E+++EEEEEE EEEEDEDGENQVVPWS AS S+PPPPPTVTSSSEGE+SA AG  SKR R
Sbjct: 121 EEEEEEEEEEGEEEEDEDGENQVVPWSYASYSSPPPPPTVTSSSEGEVSAGAGVTSKRMR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           +Y VDLDSDDE E SSA+Q TRP +NDEATSS+S RP KQARVTG +QSAS IPDD A K
Sbjct: 181 DYGVDLDSDDEIESSSARQGTRPFFNDEATSSSSLRPLKQARVTGRSQSASTIPDDAACK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
            +L+ST V+RSIQ LQ+RLP+ INDASK+IFGICKMSRDQNR
Sbjct: 241 PELESTAVVRSIQRLQSRLPSDINDASKVIFGICKMSRDQNR 282

[Close]

BLAST of Carg05668-RA vs. ExPASy TrEMBL
Match: A0A6J1IMI6 (protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111476916 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.5e-115
Identity = 224/282 (79.43%), Postives = 247/282 (87.59%), Query Frame = 0


Query: 1   MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGR 60
           M KCELCGQ AR FCESD+ANLCWDCDE VHCANFLVAKHSRSLLC ACQSPTPW ASGR
Sbjct: 1   MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGR 60

Query: 61  KLTPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGGDSEDAD 120
           KLTPTVSVCEGCVEVH GKC +G + ERRRDNEE+V+ GDDFDDGEGF SYEGGDSE   
Sbjct: 61  KLTPTVSVCEGCVEVHRGKCGEGRYIERRRDNEEEVDDGDDFDDGEGFESYEGGDSE--- 120

Query: 121 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 180
           ED+ ++E EEE+EE+DEDGENQVVPWSCASSS+PPPPPTVTSSSEGE+S  AG  SKR R
Sbjct: 121 EDEYDDELEEEDEEDDEDGENQVVPWSCASSSSPPPPPTVTSSSEGEISTGAGVTSKRMR 180

Query: 181 EYDVDLDSDDEFECSSAQQRTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARK 240
           + DVDL+SDD  ECSSA+Q TRP +N+EATSS+S+RP KQ+RVTGPTQS S  PDDEA K
Sbjct: 181 KCDVDLESDDGIECSSARQSTRPFFNEEATSSSSYRPLKQSRVTGPTQSPSTTPDDEAYK 240

Query: 241 ADLKSTTVIRSIQSLQNRLPTGINDASKLIFGICKMSRDQNR 283
           ADLKST+V+RSIQ LQNR PT INDASK+IFGICKMSRDQNR
Sbjct: 241 ADLKSTSVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 279

[Close]

BLAST of Carg05668-RA vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-34
Identity = 101/207 (48.79%), Postives = 130/207 (62.80%), Query Frame = 0


Query: 3   KCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKL 62
           KC+LC  +AR +CESD+A+LCWDCD KVH ANFLVAKH+R LLC ACQS TPW A+G +L
Sbjct: 4   KCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLRL 63

Query: 63  TPTVSVCEGCVEVH---GGK-----CEQGGFQERRRDNEEKVNGGDDFDDGEGFGSYEGG 122
            PT SVCE CV +    GG+      E  G +E      E+    +D  DG+   SY+  
Sbjct: 64  GPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSFESEEDRIREDHGDGDDAESYDDD 123

Query: 123 DSEDADED-DDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAG 182
           + ED DE+  D+E+E+++E+ +DE+ ENQVVPWS A+     PP   +SSS+G      G
Sbjct: 124 EEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWSAAAQ---VPPVMSSSSSDG---GSGG 183

Query: 183 GVSK--RRREYDVDLDSDDEFECSSAQ 199
            V+K  R RE    L SDDE   SSAQ
Sbjct: 184 SVTKRTRARENSDLLCSDDEIGSSSAQ 204

[Close]

BLAST of Carg05668-RA vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-27
Identity = 86/191 (45.03%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 3   KCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKL 62
           KCELC  +AR +CESD+A+LCWDCD KVH ANFLVAKH R LLC ACQS TPW ASG  L
Sbjct: 5   KCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLNL 64

Query: 63  TPTVSVCEGCVEVHGGKCEQGGFQERRRDNEEKVNGGDD--FDDGEGFGSYEGGDSEDAD 122
            PTVS+CE C+              R+++N   + G D     + E  G  +G +S D +
Sbjct: 65  GPTVSICESCL-------------ARKKNNNSSLAGRDQNLNQEEEIIGCNDGAESYDEE 124

Query: 123 EDDDEEEEEEEEEEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRR 182
            D+DEEEEE          ENQVVP     ++     P V+SSS   +S+  G    +R 
Sbjct: 125 SDEDEEEEEV---------ENQVVP-----AAVEQELPVVSSSS--SVSSGEGDQVVKRT 166

Query: 183 EYDVDLDSDDE 192
             D+DL+  DE
Sbjct: 185 RLDLDLNLSDE 166

[Close]

BLAST of Carg05668-RA vs. TAIR 10
Match: AT4G15250.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 3  KCELCG-QLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQ-SPTPWTASGR 62
          +C+ CG + A  +C+SD A LC +CD  VH AN L  +H+RSLLC  C   PT    +  
Sbjct: 4  RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPT----AVH 63

Query: 63 KLTPTVSVCEGC 73
           +   VS+C+GC
Sbjct: 64 CMNENVSLCQGC 71

[Close]

BLAST of Carg05668-RA vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-09
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 2  MKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPT 54
          + CELCG+ A  +CE+D A LC  CD  VH ANFL  +H R ++C  C+  T
Sbjct: 30 VSCELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLT 81

[Close]

BLAST of Carg05668-RA vs. TAIR 10
Match: AT3G07650.1 (CONSTANS-like 9 )

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-09
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 4  CELCG-QLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKL 63
          C+ CG Q +  +C SD A LC  CD  VH AN L  +HSR+L+C  C +     A+ R +
Sbjct: 5  CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQ---PATVRCV 64

Query: 64 TPTVSVCEGC 73
             VS+C+ C
Sbjct: 65 EERVSLCQNC 71

The following BLAST results are available for this feature:

BLAST of Carg05668-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607840.1	2.6e-152	100.00	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
XP_022941291.1	3.6e-146	97.16	histone H3.v1-like [Cucurbita moschata]	[more]
XP_022981574.1	2.2e-143	95.74	histone H3.v1-like [Cucurbita maxima]	[more]
XP_022936446.1	1.3e-119	81.63	protein BFR2 [Cucurbita moschata]	[more]
XP_023535120.1	8.3e-119	80.92	protein BFR2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05668-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23379	2.1e-08	43.06	Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q1G3I2	2.8e-08	48.08	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LUA9	6.2e-08	42.86	Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE...	[more]
Q9SSE5	6.2e-08	41.43	Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1...	[more]
Q9LRM4	8.1e-08	51.92	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]

BLAST of Carg05668-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKQ3	1.7e-146	97.16	histone H3.v1-like OS=Cucurbita moschata OX=3662 GN=LOC111446633 PE=4 SV=1	[more]
A0A6J1J288	1.1e-143	95.74	histone H3.v1-like OS=Cucurbita maxima OX=3661 GN=LOC111480652 PE=4 SV=1	[more]
A0A6J1F7H6	6.2e-120	81.63	protein BFR2 OS=Cucurbita moschata OX=3662 GN=LOC111443061 PE=4 SV=1	[more]
A0A6J1CD44	1.9e-116	80.50	protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1	[more]
A0A6J1IMI6	3.5e-115	79.43	protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111476916 PE=4 SV=1	[more]

BLAST of Carg05668-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27310.1	2.3e-34	48.79	B-box type zinc finger family protein	[more]
AT5G54470.1	6.1e-27	45.03	B-box type zinc finger family protein	[more]
AT4G15250.1	1.5e-09	43.06	B-box type zinc finger protein with CCT domain	[more]
AT4G15248.1	2.0e-09	48.08	B-box type zinc finger family protein	[more]
AT3G07650.1	4.4e-09	41.43	CONSTANS-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..239
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 1..231
None	No IPR available	PANTHER	PTHR31717:SF60	OS08G0178800 PROTEIN	coord: 1..231
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 3..45 e-value: 3.65573E-12 score: 58.0779
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 1..45 e-value: 2.5E-8 score: 43.7
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 2..42 e-value: 3.1E-5 score: 24.0
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..45 score: 9.314086

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05668	Carg05668	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05668-RA:1	Carg05668-RA:1	exon
Carg05668-RA:2	Carg05668-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05668-RA:cds	Carg05668-RA:cds	CDS
Carg05668-RA:cds	Carg05668-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05668-RA:three_prime_utr	Carg05668-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05668-RA	Carg05668-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding