Carg05644-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAATTCCTTTTCGCAAGGTATGCTCGCCAACGCCTTTGATGTCGTTTTCATATGTAATTTTTCTATTCTAGAAGTTAGATCTTTCAGAAGATGTTTCGTTTGCGATTTTTCAAGCGATTAATCGAGTTACACGATGAATTTTTTTGGTGATAGGTGTAGAGAAGTTGGAATATGGAAGAAGTTCTTCTGGCAGTTCTGTCAATGCTGCTTGTTGCTGCATTGGTTCCTCTGTTTCTGTGGCGGCGCTATCAGGATTCTCGCTCTGCTCATGCACATGAAGATGAGGATCAGGTGTGCTTTTGGAGGCTCGTTATGAGTTCTTTGATGGTTCATTTATTTTTTTTGTATTGAATGGCATTGCTGCGGTTATCAATCTGCTTCGAAGTAGGTGTTTCGGGGTTTTCACTTGGTTGTGGGAATTTGTTCAGGTTCCTCAGAGGGAAACTGCGGTTCGCGCCGCTGGTGGTGGCCGTCGTATGCGTCGTAGACCTGCTTCGGCTGCTAGTTCCTCGAACGCGGGGGCATCTCTGGAAGGTTTGCGTACCTATTAGCTTTCGATGTCAATTTTCGCTCCCGCCATGATCTTTTTTTGGTTTAATTTCAATTTTTTTAGTCTGTTAGTTTTATCTGTAAATCAATTGCCAGGGGAGTATGGGGCAGGTATGTCCAAGCTTGATTCACAAAGCAGCTCTCTATTTAGTTGATGAATTGAAATACGAAGTGTACATGATTGCATGCCTCATCTGAATTTGTTTTTGGTATTTAACCTCCTAAGAACAAGAGTTCACAGATATAAATGTGAGATCTCACATTGGTTTGAGAGGAGAACGAAACATTCTTTGTAAGTGTACAGAAATCTCTCTCTAGTAGACACATTTTAAAATCGTGAGGCTGATGACGATACTTAATGAGCCAAAGCGGACAATTTCTATTAGCGGTGGCCTCGGGCTATTACAATAAATGAACTTTACTTTAAGGATTTTTGACTTCCAAGTAATTTAGATAGGTCATGACCTTAAAGAATTCATTCTATATTGCACGGAGTGCAAAATGGAGGTACAAGAAAAATAGTGAGAAGCAATGAAGACTACCACACGCCCTAATACCTGGTGTTCCACTTCCAACAATAGGCAATGAATTGGCCATCGAAAATGTTGACATCGAAAGCTTAGATTGTTAACAACCTTAATGAATTGCTCTCTTCCAGATTCCTTCTAAATTTTAGATTCCGATGTTGAAATTCTCGGGTAAAAACAAGACTGAAGAATGTACTCAAGAGAAATGGCATAGAATCCGGGATAACAAATAGCTGAAGGGAGATTACCTACCTAACTGTCTTGCCAACCTAAACTATTACTCTTATATAGTATGTTTAACATAACATTCTGCAGTTGCTTGGATACTTTATTAAGGTTTTCTATTCTAGACATCTAGTGCACACATTTAGTATGAGCTTGTCAATCTTTACCAAGTATTGAAGAAGTTGTAATAATGAAGGAGGAGTTTGAGAAGTTGAAGGCAGTTGACCCCTCATAATTAGTGTATTGAGCAAAACGCACTGGAATATGGACATTTTTCTATTATTATTAATAAGTAGCCAATGTGGATGAAGTTTGGAAATGCTTGGAACAACCAATATGTGATTGTTTTAGTCAGGATTTTATTATATTGAATATGATAACTCACAACTCTGACAATTATTCCCAATGATTTTTGACAGAAAGTGCTGATGGAAGTGATGATGAAATCGCTGCGGATGAATATCATGATGGAAGAGGATCGAAGAAGAAAGAAAAGAAGCGACAAGAGCGTGAGGCACAAAGACAGGTAGCTTATATGAAGTTTTAACATATTTATAGGTACAGGAGTATAATATTAGGAGAACCAGTTTGATGTCTATTTTCCTAGAAAATGTTGACATCGAAAGTTTAGATTGTTATAACTGCATCTGTGCGTGTTGAAAATACAAGACAATATATATTGTTCCACTATACATGAAAAAATGCAGATGTCATAGGTTCTTAGCGTTGCTGTGTGACTCTTATATACTCTTATGGTCAAATATATATTGTTCCACTGTATTTGTGAAAATACAGGTCAATATATATTGTTCCACTATTCAGCATATTTTCTTTCATTTTGTTCTCTTTTATACTCTACCGGTTAACTGTATATAAGTCAAAAGTTCTCGTTTTGAAGGCTGAACAAGCTTCCCGTGACTCAAGGGTGACAAAAAAAGACCGTTATGAAGAAATGCGGAGGAAGAAAGATGAGGAGCGTGAGGAACAGGAACGATTACTGGTTAGTTAATCAATCACCTTTTCTGTTGAGAACTCTGGATATAGAAAAGTGCGAAGTAGGCTGGAAATTCTGTGGTTGAATGGTCACCTTTCTTTGTTTAGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAAGCTGCTGCACTTGAGTTTGAGAAGTGGAAAGGGGATTTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGTGGAAATCAAGATTTGGTCTCTGCTTTTGTGGACTATATAAAGGTGAAGTCTGTCATGTTGTTATGAGATGTGCAGTCTTTCCTTATGAGAATCATATTGTGTTCATGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAATATTTTTTATAAAGGTGTGGAAACCTCTCCCTAGCAAACGAGTTTTAAAACTTTGAGGGGAGCTCGAAAGGGAAAACCCAAAGATGACAACATCTGCTAGCGGTGGGCTTGGTCTATCACAGTTCATATGCATATTTTAGTGTAGGTTGGGAGTAAGATCTGCCCGTGGATGACTAAGCCTGGCTATTCTTAGTTAAAGCTGTTTAATTTATGCTTTCCTCGAGTCTCTATTTCTGAAAACCTTTTTACATTTCTTTACAGTGTCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAGCTCAGAACTCAGGTAACCCTATAATGATTGTTGTATGCATTCAGGATTTAGTTGTGATCGTATTTGTTTTTTTTTTTTCTTAAAAAAAAAGGAAAAGAAAAGAAAAGAAAAGAAAAAGAAAACGAAAACGAAAACGAAATAAATCAGAATGAACGAGTATCAAGAAGAATGGTGTTCTGTTCTTTGACTGTGGCTGTCAATTATTGTGTTTGGTTTGTTCTCAATGCATTGCTTTTGTGCAAATATTACCCATATTCATGTCATAGTATATTTCAACAATGCAGGAATGTATTAATCGGATCACCTCCCTGGAGAGTATGGGTATGACTCTATTCATTCTTCTCTCTCTTGTCAAATGCATTTCATCATGGATTCGTCTGTCACGATTTCTTTTAAGCTCTTATCGTTGTGGAACTTTTGATTAAGAGAATGATAATCACGTGTAACATCAAGTACGATGCTGATTTAAAAAACGCATTAATTTTATAGGTCGACTTTCTGGTGTTATGGACGATAGAGGGAAATATATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGAGTACATCCAGCGTCAGGGAAGAGTAAGCATTTCACATCTAGCAAGTAAGTCCAACCAGTTCATTGATTTAGAACCAAAAGTCCAATTGGTTGAGGACATGAATGTTGAGGAGATAACTGTATCCTAA TCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAATTCCTTTTCGCAAGGTGTAGAGAAGTTGGAATATGGAAGAAGTTCTTCTGGCAGTTCTGTCAATGCTGCTTGTTGCTGCATTGGTTCCTCTGTTTCTGTGGCGGCGCTATCAGGATTCTCGCTCTGCTCATGCACATGAAGATGAGGATCAGGTTCCTCAGAGGGAAACTGCGGTTCGCGCCGCTGGTGGTGGCCGTCGTATGCGTCGTAGACCTGCTTCGGCTGCTAGTTCCTCGAACGCGGGGGCATCTCTGGAAGTTTTATCTGTAAATCAATTGCCAGGGGAGTATGGGGCAGAAAGTGCTGATGGAAGTGATGATGAAATCGCTGCGGATGAATATCATGATGGAAGAGGATCGAAGAAGAAAGAAAAGAAGCGACAAGAGCGTGAGGCACAAAGACAGGCTGAACAAGCTTCCCGTGACTCAAGGGTGACAAAAAAAGACCGTTATGAAGAAATGCGGAGGAAGAAAGATGAGGAGCGTGAGGAACAGGAACGATTACTGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAAGCTGCTGCACTTGAGTTTGAGAAGTGGAAAGGGGATTTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGTGGAAATCAAGATTTGGTCTCTGCTTTTGTGGACTATATAAAGTGTCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAGCTCAGAACTCAGGAATGTATTAATCGGATCACCTCCCTGGAGAGTATGGGTCGACTTTCTGGTGTTATGGACGATAGAGGGAAATATATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGAGTACATCCAGCGTCAGGGAAGAGTAAGCATTTCACATCTAGCAAGTAAGTCCAACCAGTTCATTGATTTAGAACCAAAAGTCCAATTGGTTGAGGACATGAATGTTGAGGAGATAACTGTATCCTAA ATGGAAGAAGTTCTTCTGGCAGTTCTGTCAATGCTGCTTGTTGCTGCATTGGTTCCTCTGTTTCTGTGGCGGCGCTATCAGGATTCTCGCTCTGCTCATGCACATGAAGATGAGGATCAGGTTCCTCAGAGGGAAACTGCGGTTCGCGCCGCTGGTGGTGGCCGTCGTATGCGTCGTAGACCTGCTTCGGCTGCTAGTTCCTCGAACGCGGGGGCATCTCTGGAAGTTTTATCTGTAAATCAATTGCCAGGGGAGTATGGGGCAGAAAGTGCTGATGGAAGTGATGATGAAATCGCTGCGGATGAATATCATGATGGAAGAGGATCGAAGAAGAAAGAAAAGAAGCGACAAGAGCGTGAGGCACAAAGACAGGCTGAACAAGCTTCCCGTGACTCAAGGGTGACAAAAAAAGACCGTTATGAAGAAATGCGGAGGAAGAAAGATGAGGAGCGTGAGGAACAGGAACGATTACTGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAAGCTGCTGCACTTGAGTTTGAGAAGTGGAAAGGGGATTTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGTGGAAATCAAGATTTGGTCTCTGCTTTTGTGGACTATATAAAGTGTCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAGCTCAGAACTCAGGAATGTATTAATCGGATCACCTCCCTGGAGAGTATGGGTCGACTTTCTGGTGTTATGGACGATAGAGGGAAATATATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGAGTACATCCAGCGTCAGGGAAGAGTAAGCATTTCACATCTAGCAAGTAAGTCCAACCAGTTCATTGATTTAGAACCAAAAGTCCAATTGGTTGAGGACATGAATGTTGAGGAGATAACTGTATCCTAA MEEVLLAVLSMLLVAALVPLFLWRRYQDSRSAHAHEDEDQVPQRETAVRAAGGGRRMRRRPASAASSSNAGASLEVLSVNQLPGEYGAESADGSDDEIAADEYHDGRGSKKKEKKRQEREAQRQAEQASRDSRVTKKDRYEEMRRKKDEEREEQERLLEEEAKARKAKEEEAAALEFEKWKGDFSVDAEGTTEAEVEGGNQDLVSAFVDYIKCHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISKEEMQAVAEYIQRQGRVSISHLASKSNQFIDLEPKVQLVEDMNVEEITVS Homology
BLAST of Carg05644-RA vs. NCBI nr
Match: KAG7015214.1 (DDRGK domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 559.7 bits (1441), Expect = 1.6e-155 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
BLAST of Carg05644-RA vs. NCBI nr
Match: XP_022981566.1 (DDRGK domain-containing protein 1-like [Cucurbita maxima] >XP_022981567.1 DDRGK domain-containing protein 1-like [Cucurbita maxima]) HSP 1 Score: 518.5 bits (1334), Expect = 4.1e-143 Identity = 294/310 (94.84%), Postives = 296/310 (95.48%), Query Frame = 0
BLAST of Carg05644-RA vs. NCBI nr
Match: XP_022941508.1 (DDRGK domain-containing protein 1-like [Cucurbita moschata] >XP_022941509.1 DDRGK domain-containing protein 1-like [Cucurbita moschata]) HSP 1 Score: 516.2 bits (1328), Expect = 2.0e-142 Identity = 293/310 (94.52%), Postives = 294/310 (94.84%), Query Frame = 0
BLAST of Carg05644-RA vs. NCBI nr
Match: KAG6607816.1 (DDRGK domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142 Identity = 293/310 (94.52%), Postives = 293/310 (94.52%), Query Frame = 0
BLAST of Carg05644-RA vs. NCBI nr
Match: XP_023522553.1 (DDRGK domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023522559.1 DDRGK domain-containing protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142 Identity = 293/310 (94.52%), Postives = 294/310 (94.84%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy Swiss-Prot
Match: Q94C53 (DDRGK domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27120 PE=2 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 2.2e-91 Identity = 211/314 (67.20%), Postives = 245/314 (78.03%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy Swiss-Prot
Match: Q8LH03 (DDRGK domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0103200 PE=2 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 1.1e-79 Identity = 187/307 (60.91%), Postives = 224/307 (72.96%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy Swiss-Prot
Match: B3S3D5 (DDRGK domain-containing protein 1 OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_58679 PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30 Identity = 109/262 (41.60%), Postives = 163/262 (62.21%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy Swiss-Prot
Match: C3Y431 (DDRGK domain-containing protein 1 OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_114851 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.8e-30 Identity = 116/301 (38.54%), Postives = 170/301 (56.48%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy Swiss-Prot
Match: B0WIW5 (DDRGK domain-containing protein 1 OS=Culex quinquefasciatus OX=7176 GN=CPIJ007479 PE=3 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.9e-26 Identity = 113/300 (37.67%), Postives = 176/300 (58.67%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy TrEMBL
Match: A0A6J1IUB7 (DDRGK domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480645 PE=4 SV=1) HSP 1 Score: 518.5 bits (1334), Expect = 2.0e-143 Identity = 294/310 (94.84%), Postives = 296/310 (95.48%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy TrEMBL
Match: A0A6J1FSA9 (DDRGK domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446789 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 9.8e-143 Identity = 293/310 (94.52%), Postives = 294/310 (94.84%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy TrEMBL
Match: A0A0A0L7V5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G423830 PE=4 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 4.7e-129 Identity = 267/310 (86.13%), Postives = 283/310 (91.29%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy TrEMBL
Match: A0A5A7UHY4 (DDRGK domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold778G00030 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 8.9e-128 Identity = 265/310 (85.48%), Postives = 281/310 (90.65%), Query Frame = 0
BLAST of Carg05644-RA vs. ExPASy TrEMBL
Match: A0A1S3C022 (DDRGK domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494924 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 8.9e-128 Identity = 265/310 (85.48%), Postives = 281/310 (90.65%), Query Frame = 0
BLAST of Carg05644-RA vs. TAIR 10
Match: AT4G27120.1 (CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 337.0 bits (863), Expect = 1.6e-92 Identity = 211/314 (67.20%), Postives = 245/314 (78.03%), Query Frame = 0
BLAST of Carg05644-RA vs. TAIR 10
Match: AT4G27120.2 (CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 14775 Blast hits to 8764 proteins in 778 species: Archae - 29; Bacteria - 1878; Metazoa - 5164; Fungi - 1447; Plants - 582; Viruses - 164; Other Eukaryotes - 5511 (source: NCBI BLink). ) HSP 1 Score: 337.0 bits (863), Expect = 1.6e-92 Identity = 211/314 (67.20%), Postives = 245/314 (78.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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