Carg05144-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05144-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein kinase domain-containing protein
LocationCarg_Chr07: 3138823 .. 3140205 (-)
Sequence length891
RNA-Seq ExpressionCarg05144-RA
SyntenyCarg05144-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCTGATAATTCAATTCCATTTGACCGAGATGCCGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTATATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACGTTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAACTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCACCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTATTTGCTTCACTCTTGATAATGCTACTATTTCTAACCTAAGATAAATTTTGCAGATGACTTTTCTTTTTTTCGGTTTTTATATTCTTGATCATTATTTTAGGTGCAAGCAAATCACCTTTTGTGGAAATTCAAAAAAAATGCCGATGACTCATTAAAAGATTTGCCTGAGCTGCTTGAATAATAGTCCATATGCTACACATGATTGTCGATTGACTTTGTACTGATTGAAGCTAAAACTGAGGTTATGATCAATTAAAAGATTTGTCGATTGGCTTTGTCAAATCTCCCTTGTTCACAAGAACGTGCATGTGGTTAGACAAATTCATTTTAGAACATTGTTTCCTGAATCCAAGTATCAACTATATAATCTCAAATTTGCCTGCGAATCTATATGATTCCCAAAATAAGATTAAACCACAAGTATCCAATAGTACATCCACTTGTTTATCTTTGTGGTGTTTTGAAGCGTGATTACACTCATGTTTACAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGATGAAGTGAGGGATGAAGATTCCGAACAGAGTTATTAG

mRNA sequence

ATGCCAGCTGATAATTCAATTCCATTTGACCGAGATGCCGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTATATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACGTTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAACTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCACCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGATGAAGTGAGGGATGAAGATTCCGAACAGAGTTATTAG

Coding sequence (CDS)

ATGCCAGCTGATAATTCAATTCCATTTGACCGAGATGCCGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTATATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACGTTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAACTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCACCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGATGAAGTGAGGGATGAAGATTCCGAACAGAGTTATTAG

Protein sequence

MPADNSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRKFSGDPVFINRLRSEVQLLSTLSNDYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSTKALKKWSKQVLEGLDYLHNHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGKSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGIKPQALNKVTNDEVRAFIEKCIAQPRARPTTSELLKDPFFDEVRDEDSEQSY
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026985.18.3e-170100.00putative serine/threonine-protein kinase WNK11, partial [Cucurbita argyrosperma ... [more]
XP_022946942.14.1e-16999.66probable serine/threonine-protein kinase WNK11 [Cucurbita moschata] >XP_02294694... [more]
XP_022971060.14.6e-16899.32probable serine/threonine-protein kinase WNK11 [Cucurbita maxima] >XP_022971061.... [more]
KAG6604902.11.2e-16399.65putative serine/threonine-protein kinase WNK11, partial [Cucurbita argyrosperma ... [more]
XP_008464187.11.4e-16194.92PREDICTED: probable serine/threonine-protein kinase WNK11 isoform X1 [Cucumis me... [more]
Match NameE-valueIdentityDescription
Q6ICW61.3e-13075.52Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana OX=3702 G... [more]
Q0D5411.0e-10965.60Probable serine/threonine-protein kinase WNK5 OS=Oryza sativa subsp. japonica OX... [more]
Q9STK68.8e-9864.44Probable serine/threonine-protein kinase WNK3 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q65X231.9e-9258.74Probable serine/threonine-protein kinase WNK2 OS=Oryza sativa subsp. japonica OX... [more]
Q9CAV61.8e-9058.51Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana OX=3702 GN=WNK1 PE=... [more]
Match NameE-valueIdentityDescription
A0A6J1G5072.0e-16999.66probable serine/threonine-protein kinase WNK11 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1I0Y12.2e-16899.32probable serine/threonine-protein kinase WNK11 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A1S3CKX06.9e-16294.92probable serine/threonine-protein kinase WNK11 isoform X1 OS=Cucumis melo OX=365... [more]
A0A5D3CKR46.9e-16294.92Putative serine/threonine-protein kinase WNK11 isoform X2 OS=Cucumis melo var. m... [more]
A0A1S3CMF16.9e-16294.92probable serine/threonine-protein kinase WNK11 isoform X2 OS=Cucumis melo OX=365... [more]
Match NameE-valueIdentityDescription
AT5G55560.19.6e-13275.52Protein kinase superfamily protein [more]
AT3G48260.16.3e-9964.44with no lysine (K) kinase 3 [more]
AT3G04910.11.3e-9158.51with no lysine (K) kinase 1 [more]
AT3G22420.14.8e-9156.47with no lysine (K) kinase 2 [more]
AT5G41990.14.5e-8957.40with no lysine (K) kinase 8 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.510.10Transferase(Phosphotransferase) domain 1coord: 109..290
e-value: 1.0E-50
score: 173.8
NoneNo IPR availableGENE3D3.30.200.20Phosphorylase Kinase; domain 1coord: 11..107
e-value: 3.1E-27
score: 96.4
NoneNo IPR availablePIRSRPIRSR000620-2PIRSR000620-2coord: 107..288
e-value: 1.7E-10
score: 38.2
NoneNo IPR availablePANTHERPTHR13902:SF137SERINE/THREONINE-PROTEIN KINASE WNK11-RELATEDcoord: 1..288
NoneNo IPR availablePANTHERPTHR13902SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATEDcoord: 1..288
IPR000719Protein kinase domainPFAMPF00069Pkinasecoord: 30..284
e-value: 4.6E-51
score: 173.7
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 26..284
score: 39.240944
IPR011009Protein kinase-like domain superfamilySUPERFAMILY56112Protein kinase-like (PK-like)coord: 19..285

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05144Carg05144gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05144-RA:1Carg05144-RA:1exon
Carg05144-RA:2Carg05144-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05144-RA:cdsCarg05144-RA:cds_2CDS
Carg05144-RA:cdsCarg05144-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05144-RACarg05144-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0035556 intracellular signal transduction
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity