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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GCTTTCTCACATCTTTGGCTCTTGACGCTTACTCCTCAGTCCGATCTCCTTCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGGTACGTTTCTTCATATGTGAAAGAGTGGTCTCTAACGATGTTTGAACCGCTAGTTGAAATTGATCAAATTTCAGTTTATCCGGCAACCGTATCCTGTTTCATCCAATTCAATTTAGTTTCTCACATTATCTGTAATCTCTCTGATGTCGGGTCCATTGAAACGATTTTGCTCGAGTACAACAACTTAAGATTTTAGAATTAATGATTGTTTAGGATGTTGTGCAGGATTTGTTCATTACTATATAACTTGAATATTTGTATACTGTTTACTGTCGACGATTGGTAACCGTTTGAGCTCAATCTGTGTTTTGTCTTCAGATCGGTCTTCCTCTGTGATCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGGTAGGCTTCATCATCTGAAATAGTAGTTTTAGAAGATGTTCAGAGTTATAGTTGATTTTTGGTCGGAGTTCCGTTTATCTGATGAGCGTATTCTGCTTCGTCAATTCAAATTCAATTTCTCCAATTTCTGTTGCGTGAAATTTGATGTCTGTGCCATTAAAATAAGATCGATAAGGCCTAACGGATTAAGATTTTTGAATTAATCGTTGTTTAAGAAGTTGCGCAAGAGCTGTGCACTACTACATAACTCGACTACTTTTATTTTGTTTATTAGTTGATGGACAATAACCGTCTTAGCTCAATCTGCTCTCTCTTCAGTTCGATCTCCCGTTGCGCTTCAATTTCCATCAACGCTTTCACGTGGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGTAGTGGATTTATGACTACGCTTCATATTCTTGTTG mRNA sequence GCTTTCTCACATCTTTGGCTCTTGACGCTTACTCCTCAGTCCGATCTCCTTCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGATCGGTCTTCCTCTGTGATCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGTTCGATCTCCCGTTGCGCTTCAATTTCCATCAACGCTTTCACGTGGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGTAGTGGATTTATGACTACGCTTCATATTCTTGTTG Coding sequence (CDS) GCTTTCTCACATCTTTGGCTCTTGACGCTTACTCCTCAGTCCGATCTCCTTCGCGACTCGATCTCTATCTGCGATTTCAATCGCACCATACATCCGCAACCAAGATCGGTCTTCCTCTGTGATCCGATAACATTTGCACGGCCACTTGGATCGTATTTTCGGAGTCAAGTTCGATCTCCCGTTGCGCTTCAATTTCCATCAACGCTTTCACGTGGATCATACAATTGGAATCAAGGTACGCGTCTTCATCCAATGTAG Protein sequence AFSHLWLLTLTPQSDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGSYNWNQGTRLHPM
Homology
BLAST of Carg03707-RA vs. NCBI nr
Match: KAG7017421.1 (hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 AFSHLWLLTLTPQSDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSP 60
AFSHLWLLTLTPQSDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSP
Sbjct: 1 AFSHLWLLTLTPQSDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSP 60
Query: 61 VALQFPSTLSRGSYNWNQGTRLHPM 86
VALQFPSTLSRGSYNWNQGTRLHPM
Sbjct: 61 VALQFPSTLSRGSYNWNQGTRLHPM 85
BLAST of Carg03707-RA vs. NCBI nr
Match: KAG6580666.1 (hypothetical protein SDJN03_20668, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 140.2 bits (352), Expect = 8.3e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query: 14 SDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGS 73
SDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGS
Sbjct: 7 SDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVRSPVALQFPSTLSRGS 66
Query: 74 YNWNQ 79
YNWNQ
Sbjct: 67 YNWNQ 71
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7017421.1 | 1.1e-42 | 100.00 | hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6580666.1 | 8.3e-30 | 100.00 | hypothetical protein SDJN03_20668, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg03707 | Carg03707 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg03707-RA:3 | Carg03707-RA:3 | exon |
| Carg03707-RA:2 | Carg03707-RA:2 | exon |
| Carg03707-RA:1 | Carg03707-RA:1 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg03707-RA:three_prime_utr | Carg03707-RA:three_prime_utr | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg03707-RA:cds | Carg03707-RA:cds_3 | CDS |
| Carg03707-RA:cds | Carg03707-RA:cds_2 | CDS |
| Carg03707-RA:cds | Carg03707-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg03707-RA | Carg03707-RA-protein | polypeptide |
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