Carg02414-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02414-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 2257918 .. 2264433 (+)
Sequence length	462
RNA-Seq Expression	Carg02414-RA
Synteny	Carg02414-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCACTGACTGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGCCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGTTGGAGGCTTTCAAATAGCCCTTGGAACTTGCGCAAGTAATTGCGCGATCTCCTGGATCACTTACGCGTTATATGCCAGATGACATTCCGATCGTTACTTCTCCGATGGTTTACATTGGCATGTTGAAGATCATGAGCTGCATAGCATGAATTTTCTTTCCATTTCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCCACCCAGGTATGGATTCATTTTGGTTAAGCAATTGCGTTTTTTACGTTTTTAGGCGGTGGCTGGTTAGGATAGCATTTCTAAGTACATTCTTTTTAAACTAGAAATAGTATTGTAGGGCCATACGAAAATAGAGGAATTAATTGAAGCTTGATGGAGGAATTAATGCAGTTAGATACAGAGAAAGCTGGGTTTGGCTTCACCTGCTTTTAACTTTCGCCATAAGAGTACAATGAATCAAGCTGAAGAGGCAACATTGCTAAGTAAGAGAGCAAGGATCCTATATTAAATATATGCAATTTCTGAACTGGATCTTCGTGTGATGGGGAAGTCCATAATGAAAAGTGCCTGAAAATGGAGTATTGTTGCTCTAGGTTGCTTACTACTTGAAGAAAATGGCAGAGGGGACTGAGTCTCGCGGTTAAGGCATCACTTTCTTCGAACGATCAACAAACAAACATATGAAAGTATCCGGAAAATCACACCTGTGACCATTAGGAGGAGTAGGCATTGGCCCCAGTCATGAATGTCAAATCCACTCCCATTTAGAACTCCACAGCGAGTTATCAGCCACACTCCGTCGTACCTGTAGAACAGAGCCAGTTAGCTTAGAAAGTTTATAACAATTTAGCTAACAAACTCAATAATTCTCCCTTGGGAGAGAGGCAAAGTTTTGCGGTAGGCTAGCTTTGTAACAGCCCAAGCCTATCGCTAGCAGATATTGTTTTCTTTGGGCTTTCCCTTTTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACCAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCTCCATTGTGAGATCCCACATTGGTTGGAAAGGGGAATGAAGCATTCTTTATAATGGTGTGGAAACCTCTCCCTAATAGATGCGTTATAAAATTGTGAGGTTGACGGCAATACATAACAGCCAAAGCCTACTGCTAGTAGACATATATTGTCCCTTTGGGCTTTCCCTTTTATGCTTCCCTTCAAGGTTTTAAAACATGTCTACCAGGGAGAGGTTTCCACACCCTTATAAGAAATGTTTCATTTTCCATTGTGAGACGTTGGTTGGAAAGGGGAACGAAGCATTCCTTATAATGGTGTGGAAACCTCTCCCTAGTAGATGCATTCTAAAACCGTGAGACAGACGGCGATATGTAATAGCCAAAGCGGACAATATCTACTAGCGGTGGGCTTGGGCTATTACAAGCTTCATGTGGGGATTTGAATTATCAAACTCAAGAGTGGACATGATTATGAACGAGGGAAACTTCAAGACATACCTTTCCGCATTTGCAGTCACTAATGCTTCCAAAGCCCATTTGGGGTAACAAAGATTAGAAAGAGTCTTCATTGCTGAACTAGTTTGAGGCCTTGTTATAAAGAGGGTTAAGACAACAGGAAAAATGGCTGACCACTGCATAGAACAGTAGATTTAGTCAGTGAGGCAAATCACCAAGCTTGCTAAGAACTTCTTTATGCACTGCTTTCACTCACCAGTTGGGCTGCACCAGGCTGAAGGAGGATAGCCAAAGAATAAGCCATGCCCGTGACACAGTACAGAAGGCAGAGTAAAACAACATAATGATCTGTAAAGGAAGATCTCGGGTTTGCGAAGGAATAGAACATAGATAGATACACCAGCGGCTTTATAACTGTATTAAAATGGTCAACCGTGTCCTTTGCGAGAAAATAAGCCAAACTGCTCATGCCCGAAGAACTCTCTCTCCAATACTCCAACTTATCCAAAGAAAATGTTCTCAAAGCCGCAATTTTTCCTAGAAGAGCTGATACAATCATGGTCATGGTCAGTTATTATGTATTTAGGCCTTGATAAAAGAGAACATATTGCGTGGAAACAACGGGCAAAGGTCTCGTTAAGCATATATGTTCGCAAAGAATTGGTAACTTACAAACTGCAATAATGGTGAAAGGATAACCATAAACACCAAATGACTGGTCGCTCAAATCAGAAATCGGTCCAAGGCAGGCACCAGCAAGAAGTAAGGTCAAATAATCTATAACTTGTATTCTCGAGTCCCGTAATCGCTGCTTACCAATTCTGAAATTCATGGTTATGAAGAGACATATATCAGCTATTAATGCTTTACACACATGTCGTAAGATCATTGTTATTGAAGGTTTCTATTAATATGATGTACCTTCCAAGAAAGTATTTGTACTGCTTAAGTATGCCTGGAGTTCTTCTATGGGACAAATCTTTGGTCTTCAAAAGCATTCTTAACTTGTCATGATGTTCCTCAACTTTACTTCTTATGCCCTGCCATAACTCCCCAGCTAAAGAAGGTTGTGGCTCGACCAGAACACGGTTGCTCGTTCCATTAGTTCGCTCCACATCTGCCATGCTTGTACCGTGTCTGGCTGAGATCTGCTGCAAATCTGCTGGTACTGGGTAACCATTATGAAGCAACCATCTAACAGGAAGCTCTTCATAGCTAATATCTGCATTTGGTGTCACTATACCCTCCAAAATATCAATGAAGTGATCTGGAGGGTTAACACGCTCCGGGACATGGATTCCAAGGCCAGCAAAGTATTCTTCAACTCTCCTTGCTGGTCCATGATAAACAGTAAAACCACCTTTTGCCAGAAGAACCAAATCGTCGAACATTTTGTATAAGGTGTAGCTGAAGCGGAGATTCGTAAATTAGTAAATAATAGACATTGTCAATCAGGGATGCAGGCAGGCTATAAAGACAGTGGAAGAACAGGCTTGGAAAAGTTACCTTGGTTGATGAACCACCATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATTGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACCAAGGAGTTTCTCACAGTCTGGAGCCCCAAGAACTCGATAACTCTTTCAACAATTAGAACCTTATCTGCTTTGGATAACTCCACAGAAAGCCTATGACAATAGGCAGTCCATTATCAAAAAGCTAGTCTATTATCAAAAAGCTTACAGACAGTAATGATAAACTACTTAGAGAAGAACAAAGGAAATTAGTGATGAAATCCAGAAAGCCATAATTCATCTTAAAGTCAATTCTACTCCTTCGCACCGCTGCAGTTTCGACTCCTGCTAATACTTTAGCACACTCTTTGTTGTTACTATAGGGTCCTGAAGCACAAGGAGATTTTATTCGTTGGTGTCAATCAGGTGGTTTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCAAACTAATAGGTTTCATGTTACGTCAATAAGATAAAGCAAAGAGGAAAGGTTCAAATACCTGCAGTTTGCACTGAACCATAGATTCTCTTCCACTGTCAAGTTCCCATGGACAATATCATCTTGAGGTACAAAACCCATAATTCTTTTATATGACAGAATTGATTCATTCCTTCCATTTATTAGAATGGAACCTGTAGTCTTACATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCGGCCCCAGATGGACCCATGACAGCAGTAATCCGGCCAGGCTTGATGTTTCCAGTGACACATCTCAAAAGGTGCTTGTTTTTTGTTTTCAAAGTAAGGTTTAGGTCTTTAAATGAAACTTCAATAGGAGGGCGCCTTTTATTCTCTGGATTAGTTGCCATTTTAATTACACTTGAGAAAGTAAGATTTTGATTCTCTTGCTGCTGAACCTTTTCTTTCTCGAGTTGCACGTAAGCATGCTGAAACATCTGGCTGTGAGTACTTGAATGCTTTCCCTTTGGCACATGTTTTTTAATACCCTTTTCATTTCTAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCTTCAATTTCATGTATCATTCCCGTGTGATCAGTCTGGCTATCTGTTCTTCCTTCAATGGGCACAGATGAAGCCGATGATGTGGTTGGGATATGTGAGTATGACGTTGATAAATCATCGTCCATATCAGATTTGGATTGATCCAAAATCTTAAATTGTTCTGTATCCGAGCTTTTCACACGTGAAAACTTTCGTGATAGTTGAACTTGCAAACCACTTGCATGCTTCATTGCAGCTTTTTTCGCAGCTTTCCACCTTTGTTGTGCTTTTGCTGTTGTCTTTGCACTGTTTGCTGCTGCCTCCCTGGATTTAGCCAGTCTCCTTTCTCTAGCAGCAAGAACTTGGTCGGAGAAATTATAAATTATGAGTAGCATAGTGCTCAAACCCACCTGCATAAGCAAAGAAAAGTTCCCATTCAAGTCTTGAATAAGCAGTTATTTCTCGTAGTCACGTGTCTGAGCGTAGAACAAGAAAAGTCAGAAAGAAGAGAGTGATATTGGCAGGGGTAAATTGGGGAAGAAGAGGACTTGGAGGCCTAGTCGGTGAGTGGGTTAGGAGTTGTGCCTTAATCTTCCAAAGTTCGGACTCTTATCCTTCTTGTTACCTTTACTCAGATTTTCACATTAGTAGATGACTTACTAAAAGTATTACTCCATAAGCATGGATATTCTGATTTGCAGTGTTAGCATCACATGAAGTAAGCTTGAAGCATCCTGCAATACGTCCGGTAGAATAGATCGATGAGAAAAAATAGAGGTTCGAACGTGCAAGGATATGGAATTCAGTATCGCACTTACTATTCTGAGAAGTTGAACCCTTTCTGCAGTAATGTCTGCAATGGCAGCAAAATGGATCGATGAGATTAGAAAGCTCAGTAAACAATGGTTTATATAACATATCAGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGTATGGTTGGGCCGCCCAGGTGGTAGCTGGTAAAGATATCTGCAATAACAGGAAAATGGATAACTTCATTATGCAGAAGAACATAGAGAAGTGACAGACACGGTATGGTTTGTACTTACGGGTCACATACTCCAGTTGTTTCATTCAACTTGGCAAGGGGACAATAGGATCCTAAAGGGCATGCTGTCAGATACAAAACAGTGTTAGAAAGTGAGCACAAATCAGCTACTTATAAGGGTATAAAACAAGCTTGTCGAGGCTTAAATTTACGAGGGAAATGAAAATGAGCAACTTTCTTGTGAGATTCCACATCAGTTGGAGAGGGAAACGAAACATTTCTTATAAGAGTGTGGAAAATCTCTCTAATGGACGCGTTTTAAAACCTTGAGAGGAAGCCCAGAAGGGAAAGTCCAAAGAGGACAATATCTACTAGTAGTGGACTTAAGCTATTACAAATGGTATTACTGGGCGGTTTGTTAACGCGGACGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCCCATATTGGTTAGAAAGGTAACAAAACATTCCTTATACGGGTGTGGAGACTTTTCCTTAATGGACGCGTTCTAAAATCTTGAGGGGAAGCCCATAAGTGAAAGCTCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGAGTTGTTACAAATGGTATAAGAGCCAGACACCGAGGGGTGTGCCAACGAGGACGTTGGACCCTCAAGGGGGTGGATTGTGAGATCACACATCGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGTGTGTGAAAACCTCTTCCCTAGTGGATGCGTTTTTAAAACCTTGAGGGGAAGCCCATAAGGAAAAGTTCAAAGAGGACAATATCGGCTAGTAGTGGTTTGGGCGGTTACATTTCTAGACGAAGATCAAGCAGGTATAAGTCTAAATACTTACGAATCATGCATGTAAGACCCTGAGGACAGAAGAAACCATCGCAACAAGCTTGGCAATCATGGATTCTTGAAGGGATTTGCTGGGAATTAGTAAGGTCGACGAGCTGATCCGGACCGACACTGCATGCCCATCCTGGCTCACAACCAGAAGCCCAAGATGTCAAATTACAATTGTTGTTAAGTTTCAGTTGGAGGAAGGAAGCAGTTGA

mRNA sequence

ATGGCGGCACTGACTGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGCCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCCACCCAGGGTCCTGAAGCACAAGGAGATTTTATTCGTTGGTGTCAATCAGGTGGTTTGTGGGCTTTTGTTGCTCTCCACGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGTTGGAGGAAGGAAGCAGTTGA

Coding sequence (CDS)

ATGGCGGCACTGACTGATTTCTGTCGGGATAGTGGCGACATTTCCACCAGGAATGATCTGAATACAAGCCCAGAGATGTTGAAGCCATCTTCGGCTTCCTCAGACGATGTCTCACCCAACTCGAGAGGAAAGAGTTCAGATTCTGGTATTAACATGGAAGGGACGGCAGGAGATCGTGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTCTGGTGGTTGTGTCGACCCACCCAGGGTCCTGAAGCACAAGGAGATTTTATTCGTTGGTGTCAATCAGGTGGTTTGTGGGCTTTTGTTGCTCTCCACGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGTTGGAGGAAGGAAGCAGTTGA

Protein sequence

MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRAFAFEEVVRTQASGGCVDPPRVLKHKEILFVGVNQVVCGLLLLSTCLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQLEEGSS

Homology

[Close]

BLAST of Carg02414-RA vs. NCBI nr
Match: KAG7016297.1 (hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.8 bits (782), Expect = 2.0e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA
Sbjct: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60

Query: 61  FAFEEVVRTQASGGCVDPPRVLKHKEILFVGVNQVVCGLLLLSTCLETSEYPLSQGIFWV 120
           FAFEEVVRTQASGGCVDPPRVLKHKEILFVGVNQVVCGLLLLSTCLETSEYPLSQGIFWV
Sbjct: 61  FAFEEVVRTQASGGCVDPPRVLKHKEILFVGVNQVVCGLLLLSTCLETSEYPLSQGIFWV 120

Query: 121 VDGQNDPSEQKISPLRPTSAHMFAPPQLEEGSS 154
           VDGQNDPSEQKISPLRPTSAHMFAPPQLEEGSS
Sbjct: 121 VDGQNDPSEQKISPLRPTSAHMFAPPQLEEGSS 153

[Close]

BLAST of Carg02414-RA vs. NCBI nr
Match: KAG6578769.1 (hypothetical protein SDJN03_23217, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-33
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60
          MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA
Sbjct: 1  MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDRA 60

Query: 61 FAFEEVVRTQASGGCVDPP 80
          FAFEEVVRTQASGGCVD P
Sbjct: 61 FAFEEVVRTQASGGCVDHP 79

[Close]

BLAST of Carg02414-RA vs. NCBI nr
Match: XP_022938403.1 (uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938405.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938406.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938407.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938408.1 uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938409.1 uncharacterized protein LOC111444663 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Carg02414-RA vs. NCBI nr
Match: XP_023550186.1 (uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550187.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550188.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550189.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550190.1 uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-20
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           MAALTDFCRDSGDIS RNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISARNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Carg02414-RA vs. NCBI nr
Match: KAA0036483.1 (putative lysine-specific demethylase ELF6 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG R
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 273

[Close]

BLAST of Carg02414-RA vs. ExPASy TrEMBL
Match: A0A6J1FE04 (uncharacterized protein LOC111444663 OS=Cucurbita moschata OX=3662 GN=LOC111444663 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAG R
Sbjct: 100 MAALTDFCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGWR 158

[Close]

BLAST of Carg02414-RA vs. ExPASy TrEMBL
Match: A0A5D3BP09 (Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00510 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG R
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 273

[Close]

BLAST of Carg02414-RA vs. ExPASy TrEMBL
Match: A0A5A7T0S2 (Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG R
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 273

[Close]

BLAST of Carg02414-RA vs. ExPASy TrEMBL
Match: A0A1S3C4P0 (probable lysine-specific demethylase ELF6 OS=Cucumis melo OX=3656 GN=LOC103496436 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           M +LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG R
Sbjct: 215 MESLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 273

[Close]

BLAST of Carg02414-RA vs. ExPASy TrEMBL
Match: A0A0A0KHH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405990 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-10
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   MAALTD-FCRDSGDISTRNDLNTSPEMLKPSSASSDDVSPNSRGKSSDSGINMEGTAGDR 60
           M  LTD  CRDSG IS RNDLNTS EMLKPS+ S++DVS NSRGKSSDS INMEGTAG R
Sbjct: 215 METLTDSLCRDSGGISNRNDLNTSSEMLKPST-STEDVSHNSRGKSSDSCINMEGTAGWR 273

The following BLAST results are available for this feature:

BLAST of Carg02414-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016297.1	2.0e-79	100.00	hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578769.1	2.9e-33	98.73	hypothetical protein SDJN03_23217, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938403.1	1.6e-20	98.31	uncharacterized protein LOC111444663 [Cucurbita moschata] >XP_022938405.1 unchar...	[more]
XP_023550186.1	6.3e-20	96.61	uncharacterized protein LOC111808443 [Cucurbita pepo subsp. pepo] >XP_023550187....	[more]
KAA0036483.1	4.5e-10	76.67	putative lysine-specific demethylase ELF6 [Cucumis melo var. makuwa]	[more]

BLAST of Carg02414-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02414-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FE04	8.0e-21	98.31	uncharacterized protein LOC111444663 OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A5D3BP09	2.2e-10	76.67	Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7T0S2	2.2e-10	76.67	Putative lysine-specific demethylase ELF6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C4P0	2.2e-10	76.67	probable lysine-specific demethylase ELF6 OS=Cucumis melo OX=3656 GN=LOC10349643...	[more]
A0A0A0KHH8	2.8e-10	76.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405990 PE=4 SV=1	[more]

BLAST of Carg02414-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02414	Carg02414	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02414-RA:1	Carg02414-RA:1	exon
Carg02414-RA:2	Carg02414-RA:2	exon
Carg02414-RA:3	Carg02414-RA:3	exon
Carg02414-RA:4	Carg02414-RA:4	exon
Carg02414-RA:5	Carg02414-RA:5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02414-RA:cds	Carg02414-RA:cds	CDS
Carg02414-RA:cds	Carg02414-RA:cds_2	CDS
Carg02414-RA:cds	Carg02414-RA:cds_3	CDS
Carg02414-RA:cds	Carg02414-RA:cds_4	CDS
Carg02414-RA:cds	Carg02414-RA:cds_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02414-RA	Carg02414-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0032259	methylation
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
molecular_function	GO:0008168	methyltransferase activity