Carg01842-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01842-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	Carg_Chr04: 9047284 .. 9047595 (+)
Sequence length	312
RNA-Seq Expression	Carg01842-RA
Synteny	Carg01842-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACATCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACATCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACATCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN

Homology

[Close]

BLAST of Carg01842-RA vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60
           MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA
Sbjct: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60

Query: 61  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN
Sbjct: 61  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Carg01842-RA vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60
           MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA
Sbjct: 12  MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 71

Query: 61  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN
Sbjct: 72  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Carg01842-RA vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIF----PPPPPHTADTTL 60
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIF    PPPPPH AD +L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Carg01842-RA vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 9.7e-25
Identity = 72/110 (65.45%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIF-----PPPPPHTADTTLTG 60
           MCTRRIA  +SSSFA+LI ILWVSQIWV C   QARASRIF     PPPPPHT D T   
Sbjct: 1   MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60

Query: 61  DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 104
                 +AN   ELL+KYFK +AF D HR  EGF DSKR+IPSCPDPLHN
Sbjct: 61  -----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Carg01842-RA vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1   MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 60
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60

Query: 61  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPD 100
             +A+ + EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  --DASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Carg01842-RA vs. ExPASy Swiss-Prot
Match: Q6IWB1 (CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-05
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 13  SFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKY 72
           +F++ + ++ + QIW+    + +   +         +T +T   K N N + +R L ++Y
Sbjct: 9   TFSVALLLISLFQIWLFREGR-QVPELSDDQLGKDRNTLMTSKNK-NKNEDVQR-LFQRY 68

Query: 73  FKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           FKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  FKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Carg01842-RA vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.4e-34
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIF----PPPPPHTADTTL 60
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIF    PPPPPH AD +L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Carg01842-RA vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1   MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 60
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60

Query: 61  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPD 100
             +A+ + EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  --DASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Carg01842-RA vs. ExPASy TrEMBL
Match: A0A067GNI3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 4   RRIATSSSSSF----ALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYN 63
           R + +SSSSSF    A+L+ I+ V QIWVC  CQ  A RIF  P        +T + K  
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKNNK-- 69

Query: 64  ANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
             +  E +L+RKYF G AF+  R ++G  D KRR+PSCPDPLHN
Sbjct: 70  --SYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Carg01842-RA vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 3   TRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPP--PPPHTADTTLTGDQKYNA 62
           +RR    SSS  AL++F++++ QIWVCS C+A A RIFP    P       +T       
Sbjct: 6   SRRSIMYSSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTD---- 65

Query: 63  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           N   +++LLRK+F G+A   +   +GFE++KRR+PSCPDPLHN
Sbjct: 66  NKATKQDLLRKFFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Carg01842-RA vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 3   TRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPP--PPPHTADTTLTGDQKYNA 62
           +RR    SSS   L++F+++V QIWVCS C+A A RIFP     P+     ++       
Sbjct: 6   SRRSIMYSSSLLVLVVFLIFVLQIWVCSDCKAGAIRIFPDNGMAPNLKQRNISTTD---- 65

Query: 63  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           N +++ +L  K+F G+ +  +   +GFE++KRR+PSCPDPLHN
Sbjct: 66  NKDSKEDLFHKFFNGRQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Carg01842-RA vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 13  SFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKY 72
           +F++ + ++ + QIW+    + +   +         +T +T   K N N + +R L ++Y
Sbjct: 9   TFSVALLLISLFQIWLFREGR-QVPELSDDQLGKDRNTLMTSKNK-NKNEDVQR-LFQRY 68

Query: 73  FKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 104
           FKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  FKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Carg01842-RA vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 30/97 (30.93%), Postives = 44/97 (45.36%), Query Frame = 0


Query: 9   SSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAEREL 68
           SS ++  L++ +L       C + +  A RIFP  P               +    E +L
Sbjct: 9   SSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETPA--------------SGKRQEEDL 68

Query: 69  LRKYFKGKAFDRHRR--DEGFEDSKRRIPSCPDPLHN 104
           ++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  MKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Carg01842-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032076.1	1.1e-52	100.00	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	1.1e-52	100.00	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52083.1	1.9e-33	70.27	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6573960.1	9.7e-25	65.45	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	1.1e-23	64.36	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of Carg01842-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IWB1	4.0e-05	32.97	CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 P...	[more]

BLAST of Carg01842-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	9.4e-34	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	5.2e-24	64.36	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A067GNI3	1.4e-13	47.12	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1	[more]
A0A2C9VNI0	1.9e-13	44.66	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A2C9UKL3	1.2e-12	40.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]

BLAST of Carg01842-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	2.8e-06	32.97	CLAVATA3/ESR-RELATED 43	[more]
AT3G25905.1	1.6e-04	30.93	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 3..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01842	Carg01842	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01842-RA:1	Carg01842-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01842-RA:cds	Carg01842-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01842-RA	Carg01842-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane