Carg01264-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01264-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr06: 332505 .. 333860 (+)
Sequence length	1356
RNA-Seq Expression	Carg01264-RA
Synteny	Carg01264-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGTATTCCGTCTGCGGCTCCATCGACGCTGTGCAGAAGTTGTTCGGCGAATGTCCTCACCGGGATTTGGTGTCTTGGACCACGCTCATTCAAGCGTTTACGAAGGCTGGGCTCTATAGGAAAGCGGTTGGAGCTTTTATGGAGATGTGTGATCTGAAGCTAAGGGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCGGAAAGTGCATTCCTATATCCACCATTACATTGACGTGAATGCAGATGTATTTGTTGGCAATGCCTTGTTAGATATGTACTTGAAATGTGATGATTCGAACTCTGCTTACAAAGTGTTCGACGAAATGCCTGTGCGAAATGTGGTTACTTGGAATGCTATGATTTCGGGGTTGGCTTATCAAGGCCGGTACAAGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGAACAGGGCCCAAGCCAGACGAGGTTACGTTAGTAGGGGTTTTGAACTCTTGCGCGAACCTTGGAGTTCTTGAGTTGGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTGACTGATAAATTTGTTGGGAATGCACTTCTTGATATGTATGCAAAATGTGGAAGGATAGACGAAGCTTTTAGGGTGTTTGAGAGCATGAAAAGAAGGGATGTCTATTCATACACAGCCATGATTGTTGGGCTGGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCAGGATGTTAAGAGAAGGTGTTGAGCCAAACGAAGTAACATTTTTAGGTCTTCTCATGGCTTGCAGCCACAGTGGATTAGTTTCCGATGGCAAGAAGTACTTTTTCGACATGTCGAATACATATAAGCTTAGACCTCAAGCAGAGCATTATGGCTGCATGATTGACCTTCTTGGGCGTGCAGGTTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTCGCTTGGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCAACCTCGGGGAAAGTGTGATGCAAAAGTTGATGAATTTAGATCCTGGTGAAGATGGTAATTACATTCTTATGACTAATTTATATTCTTCTGCTCATAGATGGAAAGATGCATTGAAATTAAGAAAGAAGATGAAAAGTAAGAAGATGAGGAAAACTCCTGGATGTAGTTTGATTGAAGTTGATGGTGTTGTTCATGAATTTCGCAAGGGTGACAAGTCACATCCAAAAAACAGAGTGATATATTCAGTATTGGAAGGAATCGCTTGTCATTTAAAGAGCTATGGGACTGTGGAACATAGTACATTTTCATGGTAG

mRNA sequence

ATGAGATTGTATTCCGTCTGCGGCTCCATCGACGCTGTGCAGAAGTTGTTCGGCGAATGTCCTCACCGGGATTTGGTGTCTTGGACCACGCTCATTCAAGCGTTTACGAAGGCTGGGCTCTATAGGAAAGCGGTTGGAGCTTTTATGGAGATGTGTGATCTGAAGCTAAGGGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCGGAAAGTGCATTCCTATATCCACCATTACATTGACGTGAATGCAGATGTATTTGTTGGCAATGCCTTGTTAGATATGTACTTGAAATGTGATGATTCGAACTCTGCTTACAAAGTGTTCGACGAAATGCCTGTGCGAAATGTGGTTACTTGGAATGCTATGATTTCGGGGTTGGCTTATCAAGGCCGGTACAAGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGAACAGGGCCCAAGCCAGACGAGGTTACGTTAGTAGGGGTTTTGAACTCTTGCGCGAACCTTGGAGTTCTTGAGTTGGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTGACTGATAAATTTGTTGGGAATGCACTTCTTGATATGTATGCAAAATGTGGAAGGATAGACGAAGCTTTTAGGGTGTTTGAGAGCATGAAAAGAAGGGATGTCTATTCATACACAGCCATGATTGTTGGGCTGGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCAGGATGTTAAGAGAAGGTGTTGAGCCAAACGAAGTAACATTTTTAGGTCTTCTCATGGCTTGCAGCCACAGTGGATTAGTTTCCGATGGCAAGAAGTACTTTTTCGACATGTCGAATACATATAAGCTTAGACCTCAAGCAGAGCATTATGGCTGCATGATTGACCTTCTTGGGCGTGCAGGTTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTCGCTTGGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCAACCTCGGGGAAAGTGTGATGCAAAAGTTGATGAATTTAGATCCTGGTGAAGATGGTAATTACATTCTTATGACTAATTTATATTCTTCTGCTCATAGATGGAAAGATGCATTGAAATTAAGAAAGAAGATGAAAAGTAAGAAGATGAGGAAAACTCCTGGATGTAGTTTGATTGAAGTTGATGGTGTTGTTCATGAATTTCGCAAGGGTGACAAGTCACATCCAAAAAACAGAGTGATATATTCAGTATTGGAAGGAATCGCTTGTCATTTAAAGAGCTATGGGACTGTGGAACATAGTACATTTTCATGGTAG

Coding sequence (CDS)

ATGAGATTGTATTCCGTCTGCGGCTCCATCGACGCTGTGCAGAAGTTGTTCGGCGAATGTCCTCACCGGGATTTGGTGTCTTGGACCACGCTCATTCAAGCGTTTACGAAGGCTGGGCTCTATAGGAAAGCGGTTGGAGCTTTTATGGAGATGTGTGATCTGAAGCTAAGGGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCGGAAAGTGCATTCCTATATCCACCATTACATTGACGTGAATGCAGATGTATTTGTTGGCAATGCCTTGTTAGATATGTACTTGAAATGTGATGATTCGAACTCTGCTTACAAAGTGTTCGACGAAATGCCTGTGCGAAATGTGGTTACTTGGAATGCTATGATTTCGGGGTTGGCTTATCAAGGCCGGTACAAGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGAACAGGGCCCAAGCCAGACGAGGTTACGTTAGTAGGGGTTTTGAACTCTTGCGCGAACCTTGGAGTTCTTGAGTTGGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTGACTGATAAATTTGTTGGGAATGCACTTCTTGATATGTATGCAAAATGTGGAAGGATAGACGAAGCTTTTAGGGTGTTTGAGAGCATGAAAAGAAGGGATGTCTATTCATACACAGCCATGATTGTTGGGCTGGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCAGGATGTTAAGAGAAGGTGTTGAGCCAAACGAAGTAACATTTTTAGGTCTTCTCATGGCTTGCAGCCACAGTGGATTAGTTTCCGATGGCAAGAAGTACTTTTTCGACATGTCGAATACATATAAGCTTAGACCTCAAGCAGAGCATTATGGCTGCATGATTGACCTTCTTGGGCGTGCAGGTTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTCGCTTGGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCAACCTCGGGGAAAGTGTGATGCAAAAGTTGATGAATTTAGATCCTGGTGAAGATGGTAATTACATTCTTATGACTAATTTATATTCTTCTGCTCATAGATGGAAAGATGCATTGAAATTAAGAAAGAAGATGAAAAGTAAGAAGATGAGGAAAACTCCTGGATGTAGTTTGATTGAAGTTGATGGTGTTGTTCATGAATTTCGCAAGGGTGACAAGTCACATCCAAAAAACAGAGTGATATATTCAGTATTGGAAGGAATCGCTTGTCATTTAAAGAGCTATGGGACTGTGGAACATAGTACATTTTCATGGTAG

Protein sequence

MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFDEMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYGTVEHSTFSW

Homology

[Close]

BLAST of Carg01264-RA vs. NCBI nr
Match: KAG7027741.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 937.9 bits (2423), Expect = 3.1e-269
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG
Sbjct: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL
Sbjct: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE
Sbjct: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW
Sbjct: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 451

[Close]

BLAST of Carg01264-RA vs. NCBI nr
Match: KAG6596202.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 933.7 bits (2412), Expect = 5.9e-268
Identity = 449/451 (99.56%), Postives = 450/451 (99.78%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG
Sbjct: 160 MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 219

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 220 RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 279

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 280 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 339

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL
Sbjct: 340 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 399

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDM NTYKLRPQAE
Sbjct: 400 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMLNTYKLRPQAE 459

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 460 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 519

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 520 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 579

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKS+GTVEHSTFSW
Sbjct: 580 HPKNRVIYSVLEGIACHLKSHGTVEHSTFSW 610

[Close]

BLAST of Carg01264-RA vs. NCBI nr
Match: XP_022947818.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 928.7 bits (2399), Expect = 1.9e-266
Identity = 447/451 (99.11%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG
Sbjct: 161 MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 220

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 221 RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 280

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMI GLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 281 EMPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 340

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL DKFVGNALLDMYAKCGRIDEAFRVFE MKRRDVYSYTAMIVGLAL
Sbjct: 341 GKWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFEGMKRRDVYSYTAMIVGLAL 400

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKK FFDMSNTYKLRPQAE
Sbjct: 401 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKCFFDMSNTYKLRPQAE 460

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 461 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 520

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 521 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 580

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW
Sbjct: 581 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 611

[Close]

BLAST of Carg01264-RA vs. NCBI nr
Match: XP_023521817.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 926.8 bits (2394), Expect = 7.2e-266
Identity = 446/451 (98.89%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLR DG
Sbjct: 159 MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRVDG 218

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSA SNLGDLNLGRKVH+YIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 219 RTLVVVLSAFSNLGDLNLGRKVHAYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 278

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 279 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 338

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL DKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL
Sbjct: 339 GKWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 398

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDM NTYKLRPQAE
Sbjct: 399 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMLNTYKLRPQAE 458

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 459 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 518

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 519 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 578

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW
Sbjct: 579 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 609

[Close]

BLAST of Carg01264-RA vs. NCBI nr
Match: XP_023539560.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 926.8 bits (2394), Expect = 7.2e-266
Identity = 446/451 (98.89%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLR DG
Sbjct: 15  MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRVDG 74

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSA SNLGDLNLGRKVH+YIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 75  RTLVVVLSAFSNLGDLNLGRKVHAYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 134

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 135 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 194

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL DKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL
Sbjct: 195 GKWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 254

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDM NTYKLRPQAE
Sbjct: 255 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMLNTYKLRPQAE 314

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 315 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 374

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 375 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 434

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW
Sbjct: 435 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 465

[Close]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 9.6e-120
Identity = 195/443 (44.02%), Postives = 299/443 (67.49%), Query Frame = 0


Query: 4   YSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTL 63
           Y+  G I+  QKLF E P +D+VSW  +I  + + G Y++A+  F +M    +R D  T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 64  VVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFDEMP 123
           V V+SAC+  G + LGR+VH +I  +    +++ + NAL+D+Y KC +  +A  +F+ +P
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDH-GFGSNLKIVNALIDLYSKCGELETACGLFERLP 329

Query: 124 VRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKW 183
            ++V++WN +I G  +   YKEAL +F+ M R+G  P++VT++ +L +CA+LG +++G+W
Sbjct: 330 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 389

Query: 184 VHAYM--RRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLALH 243
           +H Y+  R   +     +  +L+DMYAKCG I+ A +VF S+  + + S+ AMI G A+H
Sbjct: 390 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 449

Query: 244 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEH 303
           G A+ +F +FSRM + G++P+++TF+GLL ACSHSG++  G+  F  M+  YK+ P+ EH
Sbjct: 450 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 509

Query: 304 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 363
           YGCMIDLLG +GL KEAEE+I+ ME+ PD   W +LL AC++HGNV LGES  + L+ ++
Sbjct: 510 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 569

Query: 364 PGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSH 423
           P   G+Y+L++N+Y+SA RW +  K R  +  K M+K PGCS IE+D VVHEF  GDK H
Sbjct: 570 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 629

Query: 424 PKNRVIYSVLEGIACHLKSYGTV 445
           P+NR IY +LE +   L+  G V
Sbjct: 630 PRNREIYGMLEEMEVLLEKAGFV 651

[Close]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 5.8e-109
Identity = 188/480 (39.17%), Postives = 290/480 (60.42%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           + +++ CG ++  +K+F E P RDLVSW  LI  + K G   KA+  +  M    ++ D 
Sbjct: 198 IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
            T++ ++S+CS LGDLN G++ + Y+     +   + + NAL+DM+ KC D + A ++FD
Sbjct: 258 VTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEARRIFD 317

Query: 121 EMPVRNVVTWNAMISGLAYQG-------------------------------RYKEALDM 180
            +  R +V+W  MISG A  G                               R ++AL +
Sbjct: 318 NLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALAL 377

Query: 181 FRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAK 240
           F+ MQ +  KPDE+T++  L++C+ LG L++G W+H Y+ +  +  +  +G +L+DMYAK
Sbjct: 378 FQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 437

Query: 241 CGRIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGL 300
           CG I EA  VF  ++ R+  +YTA+I GLALHG+A+ A   F+ M+  G+ P+E+TF+GL
Sbjct: 438 CGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGL 497

Query: 301 LMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRP 360
           L AC H G++  G+ YF  M + + L PQ +HY  M+DLLGRAGL++EA+ ++ SM +  
Sbjct: 498 LSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEA 557

Query: 361 DAFAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRK 420
           DA  WGALL  CR+HGNV LGE   +KL+ LDP + G Y+L+  +Y  A+ W+DA + R+
Sbjct: 558 DAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARR 617

Query: 421 KMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
            M  + + K PGCS IEV+G+V EF   DKS P++  IY  L  +  H++S  +V  S +
Sbjct: 618 MMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEY 676

[Close]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.0e-105
Identity = 182/449 (40.53%), Postives = 280/449 (62.36%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           + +YS  G ++   KLF E P R +V+WT L   +T +G +R+A+  F +M ++ ++ D 
Sbjct: 153 LSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDS 212

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
             +V VLSAC ++GDL+ G  +  Y+   +++  + FV   L+++Y KC     A  VFD
Sbjct: 213 YFIVQVLSACVHVGDLDSGEWIVKYMEE-MEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 272

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
            M  +++VTW+ MI G A     KE +++F +M +   KPD+ ++VG L+SCA+LG L+L
Sbjct: 273 SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDL 332

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           G+W  + + R+  LT+ F+ NAL+DMYAKCG +   F VF+ MK +D+    A I GLA 
Sbjct: 333 GEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAK 392

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           +G    +F VF +  + G+ P+  TFLGLL  C H+GL+ DG ++F  +S  Y L+   E
Sbjct: 393 NGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVE 452

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCM+DL GRAG++ +A  +I  M +RP+A  WGALL  CR+  +  L E+V+++L+ L
Sbjct: 453 HYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIAL 512

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           +P   GNY+ ++N+YS   RW +A ++R  M  K M+K PG S IE++G VHEF   DKS
Sbjct: 513 EPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKS 572

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
           HP +  IY+ LE +   ++  G V  + F
Sbjct: 573 HPLSDKIYAKLEDLGNEMRLMGFVPTTEF 600

[Close]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.1e-102
Identity = 180/471 (38.22%), Postives = 286/471 (60.72%), Query Frame = 0


Query: 4   YSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTL 63
           Y  CG +D+  K+F     +D+VSW ++I  F + G   KA+  F +M    ++A   T+
Sbjct: 176 YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 235

Query: 64  VVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKC-------------- 123
           V VLSAC+ + +L  GR+V SYI     VN ++ + NA+LDMY KC              
Sbjct: 236 VGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME 295

Query: 124 -----------------DDSNSAYKVFDEMPVRNVVTWNAMISGLAYQGRYKEALDMFRR 183
                            +D  +A +V + MP +++V WNA+IS     G+  EAL +F  
Sbjct: 296 EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 355

Query: 184 MQ-RTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAKCG 243
           +Q +   K +++TLV  L++CA +G LELG+W+H+Y++++ I  +  V +AL+ MY+KCG
Sbjct: 356 LQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCG 415

Query: 244 RIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGLLM 303
            ++++  VF S+++RDV+ ++AMI GLA+HG  N A  +F +M    V+PN VTF  +  
Sbjct: 416 DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFC 475

Query: 304 ACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRPDA 363
           ACSH+GLV + +  F  M + Y + P+ +HY C++D+LGR+G +++A + I +M I P  
Sbjct: 476 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 535

Query: 364 FAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRKKM 423
             WGALLGAC+IH N+NL E    +L+ L+P  DG ++L++N+Y+   +W++  +LRK M
Sbjct: 536 SVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHM 595

Query: 424 KSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYG 443
           +   ++K PGCS IE+DG++HEF  GD +HP +  +Y  L  +   LKS G
Sbjct: 596 RVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 645

[Close]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.4e-102
Identity = 183/475 (38.53%), Postives = 280/475 (58.95%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           M +Y+ CG I+  + +F E  HRD+V+W T+I+ + + GL  +A   F EM D  +  D 
Sbjct: 153 MDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDE 212

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNAD------------------------- 120
             L  ++SAC   G++   R ++ ++    DV  D                         
Sbjct: 213 MILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFR 272

Query: 121 ------VFVGNALLDMYLKCDDSNSAYKVFDEMPVRNVVTWNAMISGLAYQGRYKEALDM 180
                 +FV  A++  Y KC   + A  +FD+   +++V W  MIS        +EAL +
Sbjct: 273 KMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRV 332

Query: 181 FRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAK 240
           F  M  +G KPD V++  V+++CANLG+L+  KWVH+ +  N + ++  + NAL++MYAK
Sbjct: 333 FEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAK 392

Query: 241 CGRIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGL 300
           CG +D    VFE M RR+V S+++MI  L++HGEA+ A  +F+RM +E VEPNEVTF+G+
Sbjct: 393 CGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGV 452

Query: 301 LMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRP 360
           L  CSHSGLV +GKK F  M++ Y + P+ EHYGCM+DL GRA L++EA E+I SM +  
Sbjct: 453 LYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVAS 512

Query: 361 DAFAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRK 420
           +   WG+L+ ACRIHG + LG+   ++++ L+P  DG  +LM+N+Y+   RW+D   +R+
Sbjct: 513 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRR 572

Query: 421 KMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYGTV 445
            M+ K + K  G S I+ +G  HEF  GDK H ++  IY+ L+ +   LK  G V
Sbjct: 573 VMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYV 626

[Close]

BLAST of Carg01264-RA vs. ExPASy TrEMBL
Match: A0A6J1G7N7 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451544 PE=4 SV=1)

HSP 1 Score: 928.7 bits (2399), Expect = 9.2e-267
Identity = 447/451 (99.11%), Postives = 447/451 (99.11%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG
Sbjct: 161 MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 220

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 221 RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 280

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMI GLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 281 EMPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 340

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL DKFVGNALLDMYAKCGRIDEAFRVFE MKRRDVYSYTAMIVGLAL
Sbjct: 341 GKWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFEGMKRRDVYSYTAMIVGLAL 400

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKK FFDMSNTYKLRPQAE
Sbjct: 401 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKCFFDMSNTYKLRPQAE 460

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 461 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 520

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 521 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 580

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 452
           HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW
Sbjct: 581 HPKNRVIYSVLEGIACHLKSYGTVEHSTFSW 611

[Close]

BLAST of Carg01264-RA vs. ExPASy TrEMBL
Match: A0A6J1I3M1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470240 PE=4 SV=1)

HSP 1 Score: 893.3 bits (2307), Expect = 4.3e-256
Identity = 431/450 (95.78%), Postives = 438/450 (97.33%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSIDAVQKLFGE PH DLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG
Sbjct: 160 MRLYSVCGSIDAVQKLFGEYPHPDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 219

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLGRK+HSYIHHYIDVN DVFVGNALLDMYLKCDDSNSAYKVFD
Sbjct: 220 RTLVVVLSACSNLGDLNLGRKMHSYIHHYIDVNVDVFVGNALLDMYLKCDDSNSAYKVFD 279

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMI GLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL
Sbjct: 280 EMPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 339

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           G+WVHAYMRRN+IL DKFVGNALLDMYAKCG IDEAFRVFESMKRRDVYSYTAMIVGLAL
Sbjct: 340 GRWVHAYMRRNYILADKFVGNALLDMYAKCGGIDEAFRVFESMKRRDVYSYTAMIVGLAL 399

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE
Sbjct: 400 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 459

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL
Sbjct: 460 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 519

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DP EDGNYILMTNLYSSAHRWKD LKLRK MKSKKMRKTPGCSLIEVDGVVHEFRKGD S
Sbjct: 520 DPVEDGNYILMTNLYSSAHRWKDTLKLRKTMKSKKMRKTPGCSLIEVDGVVHEFRKGDMS 579

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTFS 451
           HPK+RVIYSVLEGIACHLKS+G+VEH T +
Sbjct: 580 HPKSRVIYSVLEGIACHLKSFGSVEHITMT 609

[Close]

BLAST of Carg01264-RA vs. ExPASy TrEMBL
Match: A0A0A0LFA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1)

HSP 1 Score: 822.8 bits (2124), Expect = 7.1e-235
Identity = 394/449 (87.75%), Postives = 414/449 (92.20%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSI  VQK+F ECPHRDLVSWTTLIQAFTKAGLY +AV AFMEMCDL+LRADG
Sbjct: 240 MRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADG 299

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLG+KVHSYI HYID+ ADVFVGNALLDMYLKCDD NSAYKVFD
Sbjct: 300 RTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFD 359

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPV+NVVTWNAMISGLAYQGRY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE+
Sbjct: 360 EMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI 419

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL DKFVGNALLDMYAKCG IDEAFRVFESMKRRDVYSYTAMI GLAL
Sbjct: 420 GKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLAL 479

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFS M R G+EPNEVTFLGLLMACSH GLV++GKKYFF MS+ YKLRPQAE
Sbjct: 480 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAE 539

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEIIH MEIRPD FA GALLGACRIHGNV++GESVMQKL  L
Sbjct: 540 HYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEL 599

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DP E+G YILMTNLYSS HRWKDALK+RK MK+KKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 600 DPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKS 659

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
           HP+++VIY VLEGIA HLKSYG  EHSTF
Sbjct: 660 HPRSKVIYLVLEGIATHLKSYGIEEHSTF 688

[Close]

BLAST of Carg01264-RA vs. ExPASy TrEMBL
Match: A0A5A7UKB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006110 PE=4 SV=1)

HSP 1 Score: 812.4 bits (2097), Expect = 9.6e-232
Identity = 388/449 (86.41%), Postives = 412/449 (91.76%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCGSI  VQK+F ECPHRDLVSWT LIQAFTKAGLY +AV AFMEMCDL+LRADG
Sbjct: 153 MRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVEAFMEMCDLRLRADG 212

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           RTLVVVLSACSNLGDLNLG+KVHSYI +YID+NADVFVGNAL+DMYLKCDD NSA KVFD
Sbjct: 213 RTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFD 272

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNAMISGLAYQGRY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE+
Sbjct: 273 EMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI 332

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVHAYMRRNHIL D+FVGNALLDMYAKCG IDEAFRVFESMK+RDVYSYTAMIVGLAL
Sbjct: 333 GKWVHAYMRRNHILADEFVGNALLDMYAKCGSIDEAFRVFESMKKRDVYSYTAMIVGLAL 392

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HGEANWAFQVFS M R G+EPNEVTFLGLLMACSH GLV++GKKYFF+MS+ YKLRPQ+E
Sbjct: 393 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSE 452

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGR GLVKEAEEI+H MEIRPD FA GALLGACRIHGNV++GESVMQKL  +
Sbjct: 453 HYGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEI 512

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           DP EDG YILMTNLYSS HRWKDA KLRK MK KKMRKTPGCS IEVDGVVHEFRKGDKS
Sbjct: 513 DPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKS 572

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
           HP+++VIY VLEGIA HLKSYG VEHSTF
Sbjct: 573 HPRSKVIYFVLEGIATHLKSYGIVEHSTF 601

[Close]

BLAST of Carg01264-RA vs. ExPASy TrEMBL
Match: A0A6J1DJ70 (pentatricopeptide repeat-containing protein At1g31430-like OS=Momordica charantia OX=3673 GN=LOC111021570 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.0e-225
Identity = 379/449 (84.41%), Postives = 410/449 (91.31%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           MRLYSVCG IDAVQKLF   PHRDLVSW TLIQAFT+AGL+R+A+GAF++MCDL LRADG
Sbjct: 162 MRLYSVCGLIDAVQKLFDGSPHRDLVSWATLIQAFTQAGLHRRAIGAFLKMCDLNLRADG 221

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
           R LVVVLSACSNLGDLNLGRKVHSYI HYID+NADVF+GNAL+DMYLKC+DSNSAY+VF+
Sbjct: 222 RILVVVLSACSNLGDLNLGRKVHSYIRHYIDMNADVFLGNALIDMYLKCNDSNSAYEVFN 281

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
           EMPVRNVVTWNA+ISGLAYQGRY+EALD+FR MQ  G KPDEVTLVGVLNSCANLGVLEL
Sbjct: 282 EMPVRNVVTWNAVISGLAYQGRYREALDVFRGMQSAGLKPDEVTLVGVLNSCANLGVLEL 341

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           GKWVH YMRRN+IL DKFVGNALLDMY KCGRIDEAFRVF+ MKRRDVYSYT+MIVGLAL
Sbjct: 342 GKWVHEYMRRNNILADKFVGNALLDMYGKCGRIDEAFRVFQGMKRRDVYSYTSMIVGLAL 401

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           HG+AN AF++FS M R G+EPNEVTFLGLLMACSH GLV++GKKY FDMSNTY LRPQAE
Sbjct: 402 HGKANSAFRIFSEMSRVGIEPNEVTFLGLLMACSHGGLVAEGKKYLFDMSNTYNLRPQAE 461

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCMIDLLGRAGLVKEAEEII  M+I PD FAWGALLGACRIHGNV+LGE VMQKLM+L
Sbjct: 462 HYGCMIDLLGRAGLVKEAEEIILRMQISPDTFAWGALLGACRIHGNVDLGEGVMQKLMDL 521

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           D  EDG +ILMTNLYSS HRWKDAL+LRK MKSKKMRKTPGCSLIEVDGVVHEFRKGDKS
Sbjct: 522 DRNEDGAFILMTNLYSSVHRWKDALELRKMMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 581

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
           HPK+RVIY VLE IA HLKS+G  EH TF
Sbjct: 582 HPKSRVIYKVLERIASHLKSHGIGEHGTF 610

[Close]

BLAST of Carg01264-RA vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 431.8 bits (1109), Expect = 6.8e-121
Identity = 195/443 (44.02%), Postives = 299/443 (67.49%), Query Frame = 0


Query: 4   YSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTL 63
           Y+  G I+  QKLF E P +D+VSW  +I  + + G Y++A+  F +M    +R D  T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 64  VVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFDEMP 123
           V V+SAC+  G + LGR+VH +I  +    +++ + NAL+D+Y KC +  +A  +F+ +P
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDH-GFGSNLKIVNALIDLYSKCGELETACGLFERLP 329

Query: 124 VRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKW 183
            ++V++WN +I G  +   YKEAL +F+ M R+G  P++VT++ +L +CA+LG +++G+W
Sbjct: 330 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 389

Query: 184 VHAYM--RRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLALH 243
           +H Y+  R   +     +  +L+DMYAKCG I+ A +VF S+  + + S+ AMI G A+H
Sbjct: 390 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 449

Query: 244 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEH 303
           G A+ +F +FSRM + G++P+++TF+GLL ACSHSG++  G+  F  M+  YK+ P+ EH
Sbjct: 450 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 509

Query: 304 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 363
           YGCMIDLLG +GL KEAEE+I+ ME+ PD   W +LL AC++HGNV LGES  + L+ ++
Sbjct: 510 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 569

Query: 364 PGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSH 423
           P   G+Y+L++N+Y+SA RW +  K R  +  K M+K PGCS IE+D VVHEF  GDK H
Sbjct: 570 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 629

Query: 424 PKNRVIYSVLEGIACHLKSYGTV 445
           P+NR IY +LE +   L+  G V
Sbjct: 630 PRNREIYGMLEEMEVLLEKAGFV 651

[Close]

BLAST of Carg01264-RA vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 396.0 bits (1016), Expect = 4.1e-110
Identity = 188/480 (39.17%), Postives = 290/480 (60.42%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           + +++ CG ++  +K+F E P RDLVSW  LI  + K G   KA+  +  M    ++ D 
Sbjct: 198 IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
            T++ ++S+CS LGDLN G++ + Y+     +   + + NAL+DM+ KC D + A ++FD
Sbjct: 258 VTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEARRIFD 317

Query: 121 EMPVRNVVTWNAMISGLAYQG-------------------------------RYKEALDM 180
            +  R +V+W  MISG A  G                               R ++AL +
Sbjct: 318 NLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALAL 377

Query: 181 FRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAK 240
           F+ MQ +  KPDE+T++  L++C+ LG L++G W+H Y+ +  +  +  +G +L+DMYAK
Sbjct: 378 FQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 437

Query: 241 CGRIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGL 300
           CG I EA  VF  ++ R+  +YTA+I GLALHG+A+ A   F+ M+  G+ P+E+TF+GL
Sbjct: 438 CGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGL 497

Query: 301 LMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRP 360
           L AC H G++  G+ YF  M + + L PQ +HY  M+DLLGRAGL++EA+ ++ SM +  
Sbjct: 498 LSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEA 557

Query: 361 DAFAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRK 420
           DA  WGALL  CR+HGNV LGE   +KL+ LDP + G Y+L+  +Y  A+ W+DA + R+
Sbjct: 558 DAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARR 617

Query: 421 KMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
            M  + + K PGCS IEV+G+V EF   DKS P++  IY  L  +  H++S  +V  S +
Sbjct: 618 MMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEY 676

[Close]

BLAST of Carg01264-RA vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 385.2 bits (988), Expect = 7.3e-107
Identity = 182/449 (40.53%), Postives = 280/449 (62.36%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           + +YS  G ++   KLF E P R +V+WT L   +T +G +R+A+  F +M ++ ++ D 
Sbjct: 153 LSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDS 212

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFD 120
             +V VLSAC ++GDL+ G  +  Y+   +++  + FV   L+++Y KC     A  VFD
Sbjct: 213 YFIVQVLSACVHVGDLDSGEWIVKYMEE-MEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 272

Query: 121 EMPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLEL 180
            M  +++VTW+ MI G A     KE +++F +M +   KPD+ ++VG L+SCA+LG L+L
Sbjct: 273 SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDL 332

Query: 181 GKWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLAL 240
           G+W  + + R+  LT+ F+ NAL+DMYAKCG +   F VF+ MK +D+    A I GLA 
Sbjct: 333 GEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAK 392

Query: 241 HGEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAE 300
           +G    +F VF +  + G+ P+  TFLGLL  C H+GL+ DG ++F  +S  Y L+   E
Sbjct: 393 NGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVE 452

Query: 301 HYGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNL 360
           HYGCM+DL GRAG++ +A  +I  M +RP+A  WGALL  CR+  +  L E+V+++L+ L
Sbjct: 453 HYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIAL 512

Query: 361 DPGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKS 420
           +P   GNY+ ++N+YS   RW +A ++R  M  K M+K PG S IE++G VHEF   DKS
Sbjct: 513 EPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKS 572

Query: 421 HPKNRVIYSVLEGIACHLKSYGTVEHSTF 450
           HP +  IY+ LE +   ++  G V  + F
Sbjct: 573 HPLSDKIYAKLEDLGNEMRLMGFVPTTEF 600

[Close]

BLAST of Carg01264-RA vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 7.5e-104
Identity = 180/471 (38.22%), Postives = 286/471 (60.72%), Query Frame = 0


Query: 4   YSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTL 63
           Y  CG +D+  K+F     +D+VSW ++I  F + G   KA+  F +M    ++A   T+
Sbjct: 176 YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 235

Query: 64  VVVLSACSNLGDLNLGRKVHSYIHHYIDVNADVFVGNALLDMYLKC-------------- 123
           V VLSAC+ + +L  GR+V SYI     VN ++ + NA+LDMY KC              
Sbjct: 236 VGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME 295

Query: 124 -----------------DDSNSAYKVFDEMPVRNVVTWNAMISGLAYQGRYKEALDMFRR 183
                            +D  +A +V + MP +++V WNA+IS     G+  EAL +F  
Sbjct: 296 EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 355

Query: 184 MQ-RTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAKCG 243
           +Q +   K +++TLV  L++CA +G LELG+W+H+Y++++ I  +  V +AL+ MY+KCG
Sbjct: 356 LQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCG 415

Query: 244 RIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGLLM 303
            ++++  VF S+++RDV+ ++AMI GLA+HG  N A  +F +M    V+PN VTF  +  
Sbjct: 416 DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFC 475

Query: 304 ACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRPDA 363
           ACSH+GLV + +  F  M + Y + P+ +HY C++D+LGR+G +++A + I +M I P  
Sbjct: 476 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPST 535

Query: 364 FAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRKKM 423
             WGALLGAC+IH N+NL E    +L+ L+P  DG ++L++N+Y+   +W++  +LRK M
Sbjct: 536 SVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHM 595

Query: 424 KSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYG 443
           +   ++K PGCS IE+DG++HEF  GD +HP +  +Y  L  +   LKS G
Sbjct: 596 RVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 645

[Close]

BLAST of Carg01264-RA vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 374.8 bits (961), Expect = 9.9e-104
Identity = 183/475 (38.53%), Postives = 280/475 (58.95%), Query Frame = 0


Query: 1   MRLYSVCGSIDAVQKLFGECPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADG 60
           M +Y+ CG I+  + +F E  HRD+V+W T+I+ + + GL  +A   F EM D  +  D 
Sbjct: 153 MDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDE 212

Query: 61  RTLVVVLSACSNLGDLNLGRKVHSYIHHYIDVNAD------------------------- 120
             L  ++SAC   G++   R ++ ++    DV  D                         
Sbjct: 213 MILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFR 272

Query: 121 ------VFVGNALLDMYLKCDDSNSAYKVFDEMPVRNVVTWNAMISGLAYQGRYKEALDM 180
                 +FV  A++  Y KC   + A  +FD+   +++V W  MIS        +EAL +
Sbjct: 273 KMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRV 332

Query: 181 FRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILTDKFVGNALLDMYAK 240
           F  M  +G KPD V++  V+++CANLG+L+  KWVH+ +  N + ++  + NAL++MYAK
Sbjct: 333 FEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAK 392

Query: 241 CGRIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEPNEVTFLGL 300
           CG +D    VFE M RR+V S+++MI  L++HGEA+ A  +F+RM +E VEPNEVTF+G+
Sbjct: 393 CGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGV 452

Query: 301 LMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHSMEIRP 360
           L  CSHSGLV +GKK F  M++ Y + P+ EHYGCM+DL GRA L++EA E+I SM +  
Sbjct: 453 LYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVAS 512

Query: 361 DAFAWGALLGACRIHGNVNLGESVMQKLMNLDPGEDGNYILMTNLYSSAHRWKDALKLRK 420
           +   WG+L+ ACRIHG + LG+   ++++ L+P  DG  +LM+N+Y+   RW+D   +R+
Sbjct: 513 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRR 572

Query: 421 KMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSHPKNRVIYSVLEGIACHLKSYGTV 445
            M+ K + K  G S I+ +G  HEF  GDK H ++  IY+ L+ +   LK  G V
Sbjct: 573 VMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYV 626

The following BLAST results are available for this feature:

BLAST of Carg01264-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027741.1	3.1e-269	100.00	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAG6596202.1	5.9e-268	99.56	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022947818.1	1.9e-266	99.11	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
XP_023521817.1	7.2e-266	98.89	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
XP_023539560.1	7.2e-266	98.89	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like, parti...	[more]

BLAST of Carg01264-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	9.6e-120	44.02	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9SJZ3	5.8e-109	39.17	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
Q9SR82	1.0e-105	40.53	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
O82380	1.1e-102	38.22	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
O23337	1.4e-102	38.53	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg01264-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7N7	9.2e-267	99.11	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
A0A6J1I3M1	4.3e-256	95.78	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
A0A0A0LFA5	7.1e-235	87.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1	[more]
A0A5A7UKB6	9.6e-232	86.41	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1DJ70	1.0e-225	84.41	pentatricopeptide repeat-containing protein At1g31430-like OS=Momordica charanti...	[more]

BLAST of Carg01264-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	6.8e-121	44.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22410.1	4.1e-110	39.17	SLOW GROWTH 1	[more]
AT3G08820.1	7.3e-107	40.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G29760.1	7.5e-104	38.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G14820.1	9.9e-104	38.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 24..71 e-value: 4.3E-7 score: 30.0 coord: 227..273 e-value: 3.3E-9 score: 36.8 coord: 125..174 e-value: 2.2E-13 score: 50.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 26..59 e-value: 6.1E-5 score: 20.9 coord: 128..162 e-value: 7.3E-10 score: 36.4 coord: 302..326 e-value: 6.0E-4 score: 17.8 coord: 229..263 e-value: 4.9E-7 score: 27.5 coord: 201..228 e-value: 1.1E-6 score: 26.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 370..395 e-value: 0.34 score: 11.3 coord: 301..326 e-value: 6.3E-4 score: 19.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 24..58 score: 9.602157
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 196..226 score: 10.544828
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..160 score: 13.537263
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 227..261 score: 11.432693
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 90..197 e-value: 4.7E-24 score: 87.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 201..406 e-value: 2.9E-44 score: 153.7 coord: 1..89 e-value: 1.1E-12 score: 50.0
None	No IPR available	PANTHER	PTHR47928:SF107	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..449
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..449

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01264	Carg01264	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01264-RA:1	Carg01264-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01264-RA:cds	Carg01264-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01264-RA	Carg01264-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding