Carg01222-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01222-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Growth-regulating factor
Location	Carg_Chr06: 604898 .. 606470 (-)
Sequence length	609
RNA-Seq Expression	Carg01222-RA
Synteny	Carg01222-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGCATGTTCTTTGCTGGTCCACTGCTCCTCTTTCATCTATTTTCACCTTTTTTGTGCAATTTTTTTGGTTTTTGGTTTGGTTTTAGGGAGAGGTGCGAGTTTGATGCGGAAACTAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGGTCTCACCTTTTTCTCATCATCCCACTCTTCTTTGTTCTTGTGTTGTTTGCCTTTCATCATTTGGTGCACCAAATCATATCATTATCATTTGTAGATAGTAACTTTAGATCTCATTGGAATAATGTAACGAGACTATCTGGGTTATTCTCGATTTATCGTTTCGTAGTGATTTGACTTAGTATCGTGGTGTAAAATCCTACATCTAACCTCGTGGAAACAAGAGCATCTGGGTTATTCTCGACTTATCATTTAGTAGTGATTTGACATAGTATCGTGGTGTAAAATCCTACATCTAATCTCGTGGAATGTTGTCGTCTTCTCCGTAATTAATGTTAAGAGTAACTAGCTTGTTTCCATTACTTCTCCACAAAGGCTTGACTTGTAGAGGGTAGTATTTCAAATCTATGTCGGAATTAGCCAGTGCAAAGATGATCATTGTTATTGGGTGTTCGGATAACACAGAGTCCACGGGGATGGTGGATTAGTTAGGGTAAGCTATGCGAAAAACCATTGATTTTTATCGGTTTCGTAACAACTTGGACGAACTGGGGTTCTACAAAAAGTGGTCTAGTATTTCGGGACTTGAGTTATATCGTGATAACTTATAACATTACTCGTTGGAGTACGTTTACTCATCTGGGTTTTGTGTTGGCTTATCAAAGTTCTAACCTTTTTAGAAGTTTTGTAGTGTTCGTTTTGGTCTGTTCTCGTGAGATCTCATGTGAGACTTCCTTTGATCGCGATACATCATCACTTAGCTCATTTGAACGTGTGATCGAAGAATTTTATTTGTCCGAACTTGACAATTAAATCGAACATATCATGAGCTATGAACTTTAAGGTTTACAATTGAGTGATAGCTGAATTGGTTGTTTGTTGTAGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGGCCGCCACCGTCGTCGAGAAAGAAGACAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAAAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCCTGCTCGGCCAACCCGATGGCGTGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACGGCCGGATGACAACATTGACGGTAAAAAATTATAA

mRNA sequence

ATGGGCTGCATGGAGAGGTGCGAGTTTGATGCGGAAACTAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGGCCGCCACCGTCGTCGAGAAAGAAGACAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAAAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCCTGCTCGGCCAACCCGATGGCGTGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACGGCCGGATGACAACATTGACGGTAAAAAATTATAA

Coding sequence (CDS)

ATGGGCTGCATGGAGAGGTGCGAGTTTGATGCGGAAACTAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGTGGTGGGGCGGTGGGGCGAAAGGGAGAGGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATGGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTCGGCCGCCACCGTCGTCGAGAAAGAAGACAACAAGAAGCCTTCTCCATCACCATCTCCACGCCCACCATTGACACTGACTAGTAAGAAAAGAACGAAGCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCCTGCTCGGCCAACCCGATGGCGTGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACGGCCGGATGACAACATTGACGGTAAAAAATTATAA

Protein sequence

MGCMERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVAVAPPPPLPPTRPDDNIDGKKL

Homology

[Close]

BLAST of Carg01222-RA vs. NCBI nr
Match: KAG7027782.1 (hypothetical protein SDJN02_08959, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.1 bits (1024), Expect = 2.3e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MGCMERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQ 60
           MGCMERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQ
Sbjct: 1   MGCMERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQ 60

Query: 61  EEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 120
           EEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS
Sbjct: 61  EEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 120

Query: 121 MNSVRSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV 180
           MNSVRSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV
Sbjct: 121 MNSVRSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV 180

Query: 181 AVAPPPPLPPTRPDDNIDGKKL 203
           AVAPPPPLPPTRPDDNIDGKKL
Sbjct: 181 AVAPPPPLPPTRPDDNIDGKKL 202

[Close]

BLAST of Carg01222-RA vs. NCBI nr
Match: XP_023546328.1 (uncharacterized protein LOC111805453 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 196/200 (98.00%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 4   MERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEH 63
           +ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEH
Sbjct: 51  LERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEH 110

Query: 64  QSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 123
           QSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS
Sbjct: 111 QSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 170

Query: 124 VRSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AV 183
           VRSRSS ATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV AV
Sbjct: 171 VRSRSSPATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAV 230

Query: 184 APPPPLPPTRPDDNIDGKKL 203
           APPPPLPPT PDDNIDGKKL
Sbjct: 231 APPPPLPPTPPDDNIDGKKL 250

[Close]

BLAST of Carg01222-RA vs. NCBI nr
Match: XP_023521667.1 (uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 3.3e-101
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFDAETSNGV+PQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 48  ERCEFDAETSNGVLPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 107

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 108 SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 167

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AVA 184
           RSRSS ATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV AVA
Sbjct: 168 RSRSSPATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGVMAVA 227

Query: 185 PPPPLPPTRPDDNIDGKKL 203
           PPPPLPPT PDDNIDGKKL
Sbjct: 228 PPPPLPPTPPDDNIDGKKL 246

[Close]

BLAST of Carg01222-RA vs. NCBI nr
Match: XP_022930542.1 (uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata])

HSP 1 Score: 378.3 bits (970), Expect = 4.3e-101
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 46  ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 105

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 106 SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 165

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AVA 184
           RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPD V A+A
Sbjct: 166 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDSVMALA 225

Query: 185 PPPPLPPTRPDDNIDGKKL 203
           PPPPLPPT PDDNIDGKKL
Sbjct: 226 PPPPLPPTPPDDNIDGKKL 244

[Close]

BLAST of Carg01222-RA vs. NCBI nr
Match: XP_022930465.1 (uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata])

HSP 1 Score: 378.3 bits (970), Expect = 4.3e-101
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 51  ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 110

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 111 SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 170

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AVA 184
           RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPD V A+A
Sbjct: 171 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDSVMALA 230

Query: 185 PPPPLPPTRPDDNIDGKKL 203
           PPPPLPPT PDDNIDGKKL
Sbjct: 231 PPPPLPPTPPDDNIDGKKL 249

[Close]

BLAST of Carg01222-RA vs. ExPASy Swiss-Prot
Match: Q6AWY1 (Growth-regulating factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF8 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04
Identity = 21/57 (36.84%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 79  GGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSSAATVVE 136
           G A +E  RC R +G+ WRC +  +     CE H+ +GR RS   V  R +  T+ E
Sbjct: 155 GCADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEGRKATLTIAE 211

[Close]

BLAST of Carg01222-RA vs. ExPASy TrEMBL
Match: A0A6J1EQU2 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 46  ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 105

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 106 SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 165

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AVA 184
           RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPD V A+A
Sbjct: 166 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDSVMALA 225

Query: 185 PPPPLPPTRPDDNIDGKKL 203
           PPPPLPPT PDDNIDGKKL
Sbjct: 226 PPPPLPPTPPDDNIDGKKL 244

[Close]

BLAST of Carg01222-RA vs. ExPASy TrEMBL
Match: A0A6J1EWY8 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 51  ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 110

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 111 SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 170

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDGV-AVA 184
           RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPD V A+A
Sbjct: 171 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQPDSVMALA 230

Query: 185 PPPPLPPTRPDDNIDGKKL 203
           PPPPLPPT PDDNIDGKKL
Sbjct: 231 PPPPLPPTPPDDNIDGKKL 249

[Close]

BLAST of Carg01222-RA vs. ExPASy TrEMBL
Match: A0A6J1I3R9 (Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111470285 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 164/173 (94.80%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFD+ETSNGVVPQSTSSPQVVGRWGE E+EFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 46  ERCEFDSETSNGVVPQSTSSPQVVGRWGESEKEFPLKKRRSDDHNNNGNKKMKKKQEEHQ 105

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SK+GLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 106 SKIGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 165

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQP 178
           RSRS A TVVEKEDNKKPS SPSPRPPLTLTSKKRT LGVVKARSISSLLG P
Sbjct: 166 RSRSLATTVVEKEDNKKPSSSPSPRPPLTLTSKKRTNLGVVKARSISSLLGNP 218

[Close]

BLAST of Carg01222-RA vs. ExPASy TrEMBL
Match: A0A6J1I679 (Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111470285 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 164/173 (94.80%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQVVGRWGEREREFPLKKRRSDDHNNNGNKKMKKKQEEHQ 64
           ERCEFD+ETSNGVVPQSTSSPQVVGRWGE E+EFPLKKRRSDDHNNNGNKKMKKKQEEHQ
Sbjct: 52  ERCEFDSETSNGVVPQSTSSPQVVGRWGESEKEFPLKKRRSDDHNNNGNKKMKKKQEEHQ 111

Query: 65  SKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 124
           SK+GLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV
Sbjct: 112 SKIGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 171

Query: 125 RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQP 178
           RSRS A TVVEKEDNKKPS SPSPRPPLTLTSKKRT LGVVKARSISSLLG P
Sbjct: 172 RSRSLATTVVEKEDNKKPSSSPSPRPPLTLTSKKRTNLGVVKARSISSLLGNP 224

[Close]

BLAST of Carg01222-RA vs. ExPASy TrEMBL
Match: A0A6J1F795 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.4e-57
Identity = 138/227 (60.79%), Postives = 159/227 (70.04%), Query Frame = 0


Query: 5   ERCEFDAETSNGVVPQSTSSPQV-VGRWGEREREFPLKKRR------SDDHNNNGNKK-- 64
           E   F AE SNGV+P S+SSPQV  G+W ER+++FPLKKRR      SDD  NN + +  
Sbjct: 74  ETTVFGAEASNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFERQSDDDQNNADDQTT 133

Query: 65  --------------MKKKQEEHQSKMGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQ 124
                          K  + + Q K+GLNLAGK++SRGGALMEGSRCSRVNGRGWRCCQQ
Sbjct: 134 TAAAAAAMESLPDHKKTTKNKKQPKLGLNLAGKKRSRGGALMEGSRCSRVNGRGWRCCQQ 193

Query: 125 TLVGYSLCEHHLGKGRLRSMNSVRSRSSAA--------TVVEKEDNKKPSPSPSPRPPLT 184
           TLVGYSLCEHHLGKGRLRSMN+VRSRS AA          V+K++ K P   P P P LT
Sbjct: 194 TLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIVTVDKDEKKPPPCPPPPSPSLT 253

Query: 185 LTSKKRTKLGVVKARSISSLLGQPDGVAVAPPPPLP--PTRPDDNID 199
           L SKKRTKLG+VKARSISSLLGQPDG+A  PPPP P   T P+DNI+
Sbjct: 254 LASKKRTKLGLVKARSISSLLGQPDGMAAIPPPPPPSQSTLPNDNIN 300

[Close]

BLAST of Carg01222-RA vs. TAIR 10
Match: AT2G42040.1 (CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-27
Identity = 87/178 (48.88%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 10  DAETSNGVVP--QSTSSPQVVGRWGEREREFPLKKRRS----DDHNNNGNKKMKKKQEEH 69
           DA  S  V P  +S SS QVV +    E+   L+KRR     +D+ +       ++ EE 
Sbjct: 93  DASGSKNVNPRGESVSSIQVVEK---NEKVVSLRKRRGFINFEDYED-------EEDEEA 152

Query: 70  QSKMGLNLAGKRKSR--GGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM 129
               G    GK+K++  GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSM
Sbjct: 153 SGGGGRINKGKKKAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSM 212

Query: 130 NSV---RSRSSAATVVEKEDNKKPSPSPSPRPPLTLTSKKRTKLGVVKARSISSLLGQ 177
           N     R     A VVE                     KKR KLG+VKARSISSLLGQ
Sbjct: 213 NKSGGGRGGEKKAVVVE-------------------VKKKRVKLGMVKARSISSLLGQ 241

[Close]

BLAST of Carg01222-RA vs. TAIR 10
Match: AT5G53660.1 (growth-regulating factor 7 )

HSP 1 Score: 42.7 bits (99), Expect = 4.0e-04
Identity = 21/65 (32.31%), Postives = 34/65 (52.31%), Query Frame = 0


Query: 83  MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV-----RSRSSAATVVEKE 142
           +E  RC R +G+ WRC ++ +  +  CE HL +GR RS   V     R  ++  +V  ++
Sbjct: 108 LEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEPPYSRPNNNGGSVKNRD 167

The following BLAST results are available for this feature:

BLAST of Carg01222-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027782.1	2.3e-107	100.00	hypothetical protein SDJN02_08959, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023546328.1	6.6e-102	98.00	uncharacterized protein LOC111805453 [Cucurbita pepo subsp. pepo]	[more]
XP_023521667.1	3.3e-101	97.99	uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo]	[more]
XP_022930542.1	4.3e-101	97.99	uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata]	[more]
XP_022930465.1	4.3e-101	97.99	uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg01222-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWY1	2.3e-04	36.84	Growth-regulating factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF8 PE=2...	[more]

BLAST of Carg01222-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQU2	2.1e-101	97.99	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1	[more]
A0A6J1EWY8	2.1e-101	97.99	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1	[more]
A0A6J1I3R9	2.3e-84	94.80	Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111470285 PE=3 SV=1	[more]
A0A6J1I679	2.3e-84	94.80	Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111470285 PE=3 SV=1	[more]
A0A6J1F795	2.4e-57	60.79	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1	[more]

BLAST of Carg01222-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42040.1	5.7e-27	48.88	CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 ...	[more]
AT5G53660.1	4.0e-04	32.31	growth-regulating factor 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 84..124 e-value: 1.2E-15 score: 56.9
IPR014977	WRC domain	PROSITE	PS51667	WRC	coord: 82..126 score: 21.619141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..86
None	No IPR available	PANTHER	PTHR31602:SF19	OS02G0773600 PROTEIN	coord: 10..182
IPR031137	Growth-regulating factor	PANTHER	PTHR31602	FAMILY NOT NAMED	coord: 10..182

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01222	Carg01222	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01222-RA:3	Carg01222-RA:3	exon
Carg01222-RA:2	Carg01222-RA:2	exon
Carg01222-RA:1	Carg01222-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01222-RA:cds	Carg01222-RA:cds_3	CDS
Carg01222-RA:cds	Carg01222-RA:cds_2	CDS
Carg01222-RA:cds	Carg01222-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01222-RA	Carg01222-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding