Carg01175-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01175-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	C2H2-type domain-containing protein
Location	Carg_Chr06: 833056 .. 833754 (-)
Sequence length	699
RNA-Seq Expression	Carg01175-RA
Synteny	Carg01175-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACAGGGCCGACTTCTTCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACAACCGAACACTCATCCTACTCGGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGCCCTGCTCGATGTCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGAGGGCGAGCCGGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTCACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGAAAGTGATGACGAGGACTGA

mRNA sequence

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACAGGGCCGACTTCTTCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACAACCGAACACTCATCCTACTCGGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGCCCTGCTCGATGTCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGAGGGCGAGCCGGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTCACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGAAAGTGATGACGAGGACTGA

Coding sequence (CDS)

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACAGGGCCGACTTCTTCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACAACCGAACACTCATCCTACTCGGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGCCCTGCTCGATGTCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGAGGGCGAGCCGGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTCACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGAAAGTGATGACGAGGACTGA

Protein sequence

MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAAETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED

Homology

[Close]

BLAST of Carg01175-RA vs. NCBI nr
Match: KAG7027829.1 (Zinc finger protein ZAT3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 451.8 bits (1161), Expect = 3.5e-123
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA
Sbjct: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL
Sbjct: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 232

[Close]

BLAST of Carg01175-RA vs. NCBI nr
Match: KAG6596278.1 (Zinc finger protein ZAT3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 444.9 bits (1143), Expect = 4.3e-121
Identity = 230/232 (99.14%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA
Sbjct: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           ET+RRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEE QQQPPQQQQVKAAKKKGEL
Sbjct: 61  ETNRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEE-QQQPPQQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 231

[Close]

BLAST of Carg01175-RA vs. NCBI nr
Match: XP_022962440.1 (uncharacterized protein LOC111462854 [Cucurbita moschata])

HSP 1 Score: 424.9 bits (1091), Expect = 4.6e-115
Identity = 222/232 (95.69%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVP ETSSDQRHGGERSPTGPTS PPTHNRDNNPNPTTEHSSYSD L VPPAA
Sbjct: 1   MEKNANTNVPSETSSDQRHGGERSPTGPTSPPPTHNRDNNPNPTTEHSSYSDTLRVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           ETSRRDALLDVGTSY+N+VGSSEGEPGKKRGRGDGEEEEEQQQ  P QQQVKAAKKKGEL
Sbjct: 61  ETSRRDALLDVGTSYQNIVGSSEGEPGKKRGRGDGEEEEEQQQ--PPQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDG SPEKTGGVGFDLNADPPPESDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADPPPESDDED 230

[Close]

BLAST of Carg01175-RA vs. NCBI nr
Match: XP_023539548.1 (uncharacterized protein LOC111800191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.5 bits (1077), Expect = 1.9e-113
Identity = 219/232 (94.40%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVPPETSSDQRHGGERSPTGPTS  PTHNRDNNPNPTTEHSSYSDRLPVPPAA
Sbjct: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSPQPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           ETSRRD L DVGTSYEN+VGSSEGEPGKKRGRG GEEEEEQQ   P  QQVKAAKKKGEL
Sbjct: 61  ETSRRDGLFDVGTSYENIVGSSEGEPGKKRGRGGGEEEEEQQ---PPPQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDG SPEKTGGVGFDLNADPPP SDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADPPPGSDDED 229

[Close]

BLAST of Carg01175-RA vs. NCBI nr
Match: XP_022971305.1 (uncharacterized protein LOC111470063 [Cucurbita maxima])

HSP 1 Score: 411.4 bits (1056), Expect = 5.2e-111
Identity = 216/232 (93.10%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVPPETSSDQ HGGERSPTGPTS PPTHNRDNNPNPTT HSSYSD L VPPAA
Sbjct: 1   MEKNANTNVPPETSSDQCHGGERSPTGPTSPPPTHNRDNNPNPTTGHSSYSDTLLVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           +TSRRDALLD+GTSYENVVGSS+GEPGKKRGRGDGEEEEE+QQ    QQQVKAAKKKGEL
Sbjct: 61  DTSRRDALLDIGTSYENVVGSSDGEPGKKRGRGDGEEEEEEQQ---PQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDG  PEKTGGVGFDLNADPPP SDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNADPPPGSDDED 229

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BLAST of Carg01175-RA vs. ExPASy Swiss-Prot
Match: O65499 (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.6e-04
Identity = 42/117 (35.90%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 49  SYSDR---LPVPPAAETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQP 108
           SY DR   +P+ P + TS  +  L    S      S +  P KKR +            P
Sbjct: 6   SYDDRSFHIPLHP-SNTSNPNPNLQFALS-----SSYDHSPKKKRTK---TVASSSSSSP 65

Query: 109 PQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP 163
               + K  KK       PK    C  C + F SWKALFGH+R HPER +RG  PPP
Sbjct: 66  KSASKPKYTKKPD--PNAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPP 111

[Close]

BLAST of Carg01175-RA vs. ExPASy TrEMBL
Match: A0A6J1HF26 (uncharacterized protein LOC111462854 OS=Cucurbita moschata OX=3662 GN=LOC111462854 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 222/232 (95.69%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVP ETSSDQRHGGERSPTGPTS PPTHNRDNNPNPTTEHSSYSD L VPPAA
Sbjct: 1   MEKNANTNVPSETSSDQRHGGERSPTGPTSPPPTHNRDNNPNPTTEHSSYSDTLRVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           ETSRRDALLDVGTSY+N+VGSSEGEPGKKRGRGDGEEEEEQQQ  P QQQVKAAKKKGEL
Sbjct: 61  ETSRRDALLDVGTSYQNIVGSSEGEPGKKRGRGDGEEEEEQQQ--PPQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDG SPEKTGGVGFDLNADPPPESDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADPPPESDDED 230

[Close]

BLAST of Carg01175-RA vs. ExPASy TrEMBL
Match: A0A6J1I5D3 (uncharacterized protein LOC111470063 OS=Cucurbita maxima OX=3661 GN=LOC111470063 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.5e-111
Identity = 216/232 (93.10%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEKNANTNVPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSYSDRLPVPPAA 60
           MEKNANTNVPPETSSDQ HGGERSPTGPTS PPTHNRDNNPNPTT HSSYSD L VPPAA
Sbjct: 1   MEKNANTNVPPETSSDQCHGGERSPTGPTSPPPTHNRDNNPNPTTGHSSYSDTLLVPPAA 60

Query: 61  ETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKGEL 120
           +TSRRDALLD+GTSYENVVGSS+GEPGKKRGRGDGEEEEE+QQ    QQQVKAAKKKGEL
Sbjct: 61  DTSRRDALLDIGTSYENVVGSSDGEPGKKRGRGDGEEEEEEQQ---PQQQVKAAKKKGEL 120

Query: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180
           TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL
Sbjct: 121 TEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTL 180

Query: 181 LTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLNADPPPESDDED 233
           LTVAQEVAASRRGLDIDLNQPSTADDG  PEKTGGVGFDLNADPPP SDDED
Sbjct: 181 LTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNADPPPGSDDED 229

[Close]

BLAST of Carg01175-RA vs. ExPASy TrEMBL
Match: A0A5D3CLS0 (Zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00180 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 7.2e-74
Identity = 171/250 (68.40%), Postives = 183/250 (73.20%), Query Frame = 0


Query: 1   MEKNANTN----------VPPETSSDQRHGGERSPTGPTSSPPTHNRD--NNPNPTTEHS 60
           MEKN NTN             ETS DQRHGGERSP   +  PP  N D  NNP       
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHGGERSPMAASPLPPARNIDDINNPPTVVIEP 60

Query: 61  SYSDRLPVPPAA---ETSRR---DALLDVGT-SYENVVGSSEGEPGKKRGRGDGEEEEEQ 120
           S S  +  P +A   +  RR   DA+ DVGT S+E+V GSS+ E GKKRGRGDG E    
Sbjct: 61  SSSTLVAAPESATPGDVRRRQSVDAMFDVGTSSHEHVGGSSDAEAGKKRGRGDGGE---- 120

Query: 121 QQQPPQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180
                QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP
Sbjct: 121 -----QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180

Query: 181 PTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLN 232
           PTAAELDIRRCQQQLASTLLTVAQ+VAA+RRGLDIDLNQPSTADDG SP+ T   GFDLN
Sbjct: 181 PTAAELDIRRCQQQLASTLLTVAQQVAATRRGLDIDLNQPSTADDGDSPDNTRDAGFDLN 240

[Close]

BLAST of Carg01175-RA vs. ExPASy TrEMBL
Match: A0A1S3BLF2 (uncharacterized protein LOC103491103 OS=Cucumis melo OX=3656 GN=LOC103491103 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 7.2e-74
Identity = 171/250 (68.40%), Postives = 183/250 (73.20%), Query Frame = 0


Query: 1   MEKNANTN----------VPPETSSDQRHGGERSPTGPTSSPPTHNRD--NNPNPTTEHS 60
           MEKN NTN             ETS DQRHGGERSP   +  PP  N D  NNP       
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHGGERSPMAASPLPPARNIDDINNPPTVVIEP 60

Query: 61  SYSDRLPVPPAA---ETSRR---DALLDVGT-SYENVVGSSEGEPGKKRGRGDGEEEEEQ 120
           S S  +  P +A   +  RR   DA+ DVGT S+E+V GSS+ E GKKRGRGDG E    
Sbjct: 61  SSSTLVAAPESATPGDVRRRQSVDAMFDVGTSSHEHVGGSSDAEAGKKRGRGDGGE---- 120

Query: 121 QQQPPQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180
                QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP
Sbjct: 121 -----QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180

Query: 181 PTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLN 232
           PTAAELDIRRCQQQLASTLLTVAQ+VAA+RRGLDIDLNQPSTADDG SP+ T   GFDLN
Sbjct: 181 PTAAELDIRRCQQQLASTLLTVAQQVAATRRGLDIDLNQPSTADDGDSPDNTRDAGFDLN 240

[Close]

BLAST of Carg01175-RA vs. ExPASy TrEMBL
Match: A0A0A0L0X7 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G001720 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 8.3e-70
Identity = 164/250 (65.60%), Postives = 177/250 (70.80%), Query Frame = 0


Query: 1   MEKNANTN----------VPPETSSDQRHGGERSPTGPTSSPPTHNRDNNPNPTTEHSSY 60
           MEKN NTN             ETS DQRH  ERSP   +  PP    D+  NP T+    
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHRRERSPMAASPPPPARIIDDINNPPTDVIEP 60

Query: 61  SDRLPVPPAAETSRRD--------ALLDVGT-SYENVVGSSEGEPGKKRGRGDGEEEEEQ 120
           S  + V      +  D        A+ DVGT S+E+V GSS+ E GKKRGRGDG E    
Sbjct: 61  SSSIVVAAPESVTPGDVRRRQSVNAMFDVGTSSHEHVGGSSDVEAGKKRGRGDGGE---- 120

Query: 121 QQQPPQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180
                QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP
Sbjct: 121 -----QQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPP 180

Query: 181 PTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGHSPEKTGGVGFDLN 232
           PTAAELDIRRCQQQLASTLLTVAQ+V+ASRRGLDIDLNQPSTADDG SP+ T   GFDLN
Sbjct: 181 PTAAELDIRRCQQQLASTLLTVAQQVSASRRGLDIDLNQPSTADDGDSPDNTRDAGFDLN 240

[Close]

BLAST of Carg01175-RA vs. TAIR 10
Match: AT4G35700.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-14
Identity = 59/152 (38.82%), Postives = 73/152 (48.03%), Query Frame = 0


Query: 111 VKAAKKKG--ELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT--AAE 170
           VK  +KKG  +LT +P+G P C  C K F SWKA+FGHLR H +R Y G LPPPT  AAE
Sbjct: 123 VKKPRKKGSTQLTHLPQGPPMCNVCGKGFASWKAVFGHLRQHKDRGYLGFLPPPTFNAAE 182

Query: 171 LDI----RRCQQQLASTLLTVAQEVAASRRG------------------LDIDLNQPSTA 230
                          +T ++V +   AS  G                    IDLN    A
Sbjct: 183 EGFGGVATASTGGAVATAISVGEVPTASSAGGLATASSDGEGLVSSIGRARIDLN----A 242

Query: 231 DDGHSPEKTGGVG----FDLNADPPPESDDED 233
           D     +K  GVG    FDLN  PPP+ D+E+
Sbjct: 243 DPVEEEDKVIGVGSKRKFDLNRSPPPDGDEEN 270

[Close]

BLAST of Carg01175-RA vs. TAIR 10
Match: AT4G35610.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-10
Identity = 57/182 (31.32%), Postives = 79/182 (43.41%), Query Frame = 0


Query: 79  VGSSEGEPGKKRGRGDGEEEEEQQQQPPQQQQVKAAKKKG-ELTEVPKGEPRCATCNKVF 138
           +    G  GKK+ R     + + +     + + K  KKK  ELT  PKG P C  C + F
Sbjct: 88  MNEGSGSGGKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAKELTHPPKGPPVCHICGRGF 147

Query: 139 KSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDI- 198
            SWKA+FGH+R+H +R Y+G LPPPT +    R     L S   T+A     S  G+ + 
Sbjct: 148 GSWKAVFGHMRAHRDRNYQGFLPPPTFSAGAERFVIPGLRSA-FTIATVGGGSSGGVAVG 207

Query: 199 --DLNQPSTADDGHSPEKTGGVG------------------------FDLNADPPPESDD 233
                  S +  G +P   GG G                        FDLN  PP + ++
Sbjct: 208 GRSSGDFSGSGGGDAPGSEGGRGSGIDLNVEPVEQVEEATESGCIAKFDLNKSPPKDEEE 267

[Close]

BLAST of Carg01175-RA vs. TAIR 10
Match: AT4G35280.1 (C2H2-like zinc finger protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-05
Identity = 42/117 (35.90%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 49  SYSDR---LPVPPAAETSRRDALLDVGTSYENVVGSSEGEPGKKRGRGDGEEEEEQQQQP 108
           SY DR   +P+ P + TS  +  L    S      S +  P KKR +            P
Sbjct: 6   SYDDRSFHIPLHP-SNTSNPNPNLQFALS-----SSYDHSPKKKRTK---TVASSSSSSP 65

Query: 109 PQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP 163
               + K  KK       PK    C  C + F SWKALFGH+R HPER +RG  PPP
Sbjct: 66  KSASKPKYTKKPD--PNAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPP 111

[Close]

BLAST of Carg01175-RA vs. TAIR 10
Match: AT2G26940.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.6e-04
Identity = 25/84 (29.76%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 92  RGDGEEEEEQQQQPPQQQQVKAAKKKGE------LTEVPKGEPRCATCNKVFKSWKALFG 151
           +G  ++ ++ + +  +++++   KK+ E       T+V +G+ RC  C K F++  +LFG
Sbjct: 78  KGKMKKMKKMKLKKKKKRKIGLVKKEKEKEIDLARTDV-EGKIRCCLCGKEFQTMHSLFG 137

Query: 152 HLRSHPERTYRGALPPPTAAELDI 170
           H+R HP+RT++G  PPP + + ++
Sbjct: 138 HMRRHPDRTWKGIRPPPPSEKFNL 160

[Close]

BLAST of Carg01175-RA vs. TAIR 10
Match: AT5G56200.1 (C2H2 type zinc finger transcription factor family )

HSP 1 Score: 42.7 bits (99), Expect = 4.6e-04
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 96  EEEEEQQQQPPQQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTY 155
           E  +    +P     +    ++G+L      E  C  C K F S KAL+GH+R HP+R +
Sbjct: 104 ETRKFSMMRPKMVSGMVGRSERGDL------EVACCVCYKKFTSMKALYGHMRFHPDRGW 163

Query: 156 RGALPPP 163
           +G LPPP
Sbjct: 164 KGVLPPP 164

The following BLAST results are available for this feature:

BLAST of Carg01175-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027829.1	3.5e-123	100.00	Zinc finger protein ZAT3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596278.1	4.3e-121	99.14	Zinc finger protein ZAT3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022962440.1	4.6e-115	95.69	uncharacterized protein LOC111462854 [Cucurbita moschata]	[more]
XP_023539548.1	1.9e-113	94.40	uncharacterized protein LOC111800191 [Cucurbita pepo subsp. pepo]	[more]
XP_022971305.1	5.2e-111	93.10	uncharacterized protein LOC111470063 [Cucurbita maxima]	[more]

BLAST of Carg01175-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65499	2.6e-04	35.90	Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1	[more]

BLAST of Carg01175-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HF26	2.2e-115	95.69	uncharacterized protein LOC111462854 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1I5D3	2.5e-111	93.10	uncharacterized protein LOC111470063 OS=Cucurbita maxima OX=3661 GN=LOC111470063...	[more]
A0A5D3CLS0	7.2e-74	68.40	Zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BLF2	7.2e-74	68.40	uncharacterized protein LOC103491103 OS=Cucumis melo OX=3656 GN=LOC103491103 PE=...	[more]
A0A0A0L0X7	8.3e-70	65.60	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G001720 P...	[more]

BLAST of Carg01175-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35700.1	2.2e-14	38.82	zinc finger (C2H2 type) family protein	[more]
AT4G35610.1	4.3e-10	31.32	zinc finger (C2H2 type) family protein	[more]
AT4G35280.1	1.9e-05	35.90	C2H2-like zinc finger protein	[more]
AT2G26940.1	1.6e-04	29.76	C2H2-type zinc finger family protein	[more]
AT5G56200.1	4.6e-04	35.82	C2H2 type zinc finger transcription factor family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 129..152 e-value: 8.3E-8 score: 32.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..128
None	No IPR available	PANTHER	PTHR47591:SF4	TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE	coord: 11..232
None	No IPR available	PANTHER	PTHR47591	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 11..232
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 130..150
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 128..150 score: 8.64193

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01175	Carg01175	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01175-RA:1	Carg01175-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01175-RA:cds	Carg01175-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01175-RA	Carg01175-RA-protein	polypeptide