Carg01139-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01139-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL74-like
Location	Carg_Chr06: 1016052 .. 1016627 (-)
Sequence length	576
RNA-Seq Expression	Carg01139-RA
Synteny	Carg01139-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACCGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTAATTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGTCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAACCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

mRNA sequence

ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACCGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTAATTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGTCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAACCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

Coding sequence (CDS)

ATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACCGAGCCAGTGCCGGGGAACACCACGGCTAATTCCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGCGTTTTGAGCCTCGGCTTCCGGTTTCGGGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTAATTGTAACCATGGATTCCACGTCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGTCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCGCCGCAACCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGTGGTGGCAATTAG

Protein sequence

MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSHVVVVVEGGGN

Homology

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BLAST of Carg01139-RA vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.8 bits (1000), Expect = 1.3e-104
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 120
           LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK
Sbjct: 61  LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 120

Query: 121 VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS 180
           VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS
Sbjct: 121 VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS 180

Query: 181 HVVVVVEGGGN 192
           HVVVVVEGGGN
Sbjct: 181 HVVVVVEGGGN 191

[Close]

BLAST of Carg01139-RA vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.1 bits (941), Expect = 9.3e-98
Identity = 186/192 (96.88%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120
           LSLGFRFR ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180
           KVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVS    PPQGSAS
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVS----PPQGSAS 180

Query: 181 SHVVVVVEGGGN 192
           SHVVVVVEGGGN
Sbjct: 181 SHVVVVVEGGGN 188

[Close]

BLAST of Carg01139-RA vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 182/192 (94.79%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MDPNLPRRLLATE V GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVN+LVRCV
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120
           LSLGFRFR ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180
           KVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRD  TVSP  PPP+GSAS
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

Query: 181 SHVVVVVEGGGN 192
           SHVVVVVEGGGN
Sbjct: 181 SHVVVVVEGGGN 192

[Close]

BLAST of Carg01139-RA vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 224.6 bits (571), Expect = 7.5e-55
Identity = 126/199 (63.32%), Postives = 143/199 (71.86%), Query Frame = 0


Query: 1   MDPNLPRRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSL 60
           M+ NL RRLLATE    P   N T +S+ YVGEMNLDA+MVVILAAL  ALIGALG+NS+
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSA-YVGEMNLDANMVVILAALSCALIGALGMNSI 60

Query: 61  VRCVLSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVY------GSDCAKIKGTDCAI 120
           VRCVL    R  + PE  A   AA GLKKR+L QIPVGVY      G +   IKGTDCAI
Sbjct: 61  VRCVL----RCSQSPEGAA---AATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAI 120

Query: 121 CLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPP 180
           CLGEF+ GDK+RMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLL PP+K K   A   P 
Sbjct: 121 CLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQP- 180

Query: 181 QPPPQGSASSHVVVVVEGG 190
            PP   S  +HVV++++ G
Sbjct: 181 -PPASASTQAHVVLLLQSG 189

[Close]

BLAST of Carg01139-RA vs. NCBI nr
Match: XP_041025774.1 (RING-H2 finger protein ATL74-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-48
Identity = 110/185 (59.46%), Postives = 127/185 (68.65%), Query Frame = 0


Query: 7   RRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLS 66
           RRL+ TE    P  GN T +S  Y+ E N D +MV+ILAALL ALI ALG+NS+VRC   
Sbjct: 3   RRLVETELSLPPENGNKTRDS--YLSETNFDTNMVIILAALLCALICALGLNSIVRCAFR 62

Query: 67  LGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKV 126
              RF  E P++TAARLAA GLKKR+L QIPV +YGS    IK T+CAICLGEFE G+ V
Sbjct: 63  CSRRFALETPDQTAARLAATGLKKRDLRQIPVAIYGSG-VNIKATECAICLGEFEDGENV 122

Query: 127 RMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSH 186
           R+LP CNHGFHV CIDTWLLSHSSCPNCRHSL   P  G      VSP +P   G+    
Sbjct: 123 RVLPKCNHGFHVSCIDTWLLSHSSCPNCRHSLREHPATGSGTNPPVSPAEPSGNGAGRQG 182

[Close]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 88/158 (55.70%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 8   RLLATEPVPGNTTANS---SYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLG 67
           RLL      GN T+ S     Y  +MN DA+MV+ILAALL ALI ALG+NS++RC +  G
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  FRFRERPEETAARLAA--IGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVR 127
           F         AA   A   GLKKREL + PV  YGS   KI  T+CAICLGEF  G++VR
Sbjct: 63  FGL---SSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVR 122

Query: 128 MLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKG 161
           +LP CNH FH+ CIDTWL+SHSSCPNCRHSL+   V G
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAG 157

[Close]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-37
Identity = 84/161 (52.17%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 16  PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRERPEETA 75
           P N        + +   D +MV+ILAALL ALI AL +NS +RCVL +  RF    + + 
Sbjct: 13  PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSN 72

Query: 76  AR---------LAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPN 135
           A           AA GLKK+ L QIPVG+YGS    +K T+C ICLG+FE G+KVR+LP 
Sbjct: 73  ASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPK 132

Query: 136 CNHGFHVRCIDTWLLSHSSCPNCRHSLLL----PPVKGKRD 164
           CNHGFHVRCIDTWLLS SSCP CR SLLL    P    +RD
Sbjct: 133 CNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRD 173

[Close]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-36
Identity = 90/180 (50.00%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 5   LPRRLLATEPVP------------GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALG 64
           + R LLAT+  P            G++ +N+       ++D HMV+ILAALL ALI ALG
Sbjct: 1   MARFLLATQATPTISATDANPRTLGDSVSNNKNIA---SMDTHMVIILAALLCALICALG 60

Query: 65  VNSLVRCVLSLGFRF--RERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAI 124
           +NS++RCVL    RF   E P +T A +A  G+KKR L  IPV  Y  +  K+K T+C I
Sbjct: 61  INSVLRCVLRCTRRFTPNEDPVDTNANVAK-GIKKRALKVIPVDSYSPE-LKMKATECLI 120

Query: 125 CLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLL--LPPVKGKRDGATVS 169
           CLG+F  G+ VR+LP CNHGFHV+CIDTWLLSHSSCP CR SLL    P  G R G  V+
Sbjct: 121 CLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDVA 175

[Close]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 20  TANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRERP--EETAAR 79
           T   S YVG+ N DA++V++L+ LL AL+ +LG+NS++RC L            +    R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 80  LAAIGLKKRELSQIPVGVYGSDCAKIKG--TDCAICLGEFEVGDKVRMLPNCNHGFHVRC 139
           L   G+K++ L       Y ++   + G  T+CAICL EF   ++V++LP C+HGFHVRC
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTE-LNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRC 159

Query: 140 IDTWLLSHSSCPNCRHSLL 155
           ID WL SHSSCP CRH L+
Sbjct: 160 IDKWLSSHSSCPTCRHCLI 177

[Close]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 8   RLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV----LSL 67
           RLL     P     NS+       L++ +VVILAALL ALI  LG+ ++ RCV    L+ 
Sbjct: 7   RLLVESNTPSPAIDNST-----AALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAA 66

Query: 68  GFR----FRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKI-KGTDCAICLGEFEVG 127
           G R     + +  +     A  GLKK+ L  +P   +  +  +  K  +CAICL EF  G
Sbjct: 67  GNRTVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAG 126

Query: 128 DKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLL 156
           D++R+LP C HGFHV CIDTWL SHSSCP+CR  L++
Sbjct: 127 DELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 158

[Close]

BLAST of Carg01139-RA vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 6.5e-105
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 120
           LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK
Sbjct: 61  LSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDK 120

Query: 121 VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS 180
           VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS
Sbjct: 121 VRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASS 180

Query: 181 HVVVVVEGGGN 192
           HVVVVVEGGGN
Sbjct: 181 HVVVVVEGGGN 191

[Close]

BLAST of Carg01139-RA vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.0e-97
Identity = 182/192 (94.79%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60
           MDPNLPRRLLATE V GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVN+LVRCV
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120
           LSLGFRFR ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180
           KVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRD  TVSP  PPP+GSAS
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

Query: 181 SHVVVVVEGGGN 192
           SHVVVVVEGGGN
Sbjct: 181 SHVVVVVEGGGN 192

[Close]

BLAST of Carg01139-RA vs. ExPASy TrEMBL
Match: A0A6J1DW47 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.6e-55
Identity = 126/199 (63.32%), Postives = 143/199 (71.86%), Query Frame = 0


Query: 1   MDPNLPRRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSL 60
           M+ NL RRLLATE    P   N T +S+ YVGEMNLDA+MVVILAAL  ALIGALG+NS+
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSA-YVGEMNLDANMVVILAALSCALIGALGMNSI 60

Query: 61  VRCVLSLGFRFRERPEETAARLAAIGLKKRELSQIPVGVY------GSDCAKIKGTDCAI 120
           VRCVL    R  + PE  A   AA GLKKR+L QIPVGVY      G +   IKGTDCAI
Sbjct: 61  VRCVL----RCSQSPEGAA---AATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAI 120

Query: 121 CLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPP 180
           CLGEF+ GDK+RMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLL PP+K K   A   P 
Sbjct: 121 CLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQP- 180

Query: 181 QPPPQGSASSHVVVVVEGG 190
            PP   S  +HVV++++ G
Sbjct: 181 -PPASASTQAHVVLLLQSG 189

[Close]

BLAST of Carg01139-RA vs. ExPASy TrEMBL
Match: A0A2I4E4V2 (RING-H2 finger protein ATL74-like OS=Juglans regia OX=51240 GN=LOC108986291 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.5e-48
Identity = 110/185 (59.46%), Postives = 127/185 (68.65%), Query Frame = 0


Query: 7   RRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLS 66
           RRL+ TE    P  GN   +S  Y+ E N D +MV+ILAALL ALI ALG+NS+VRC   
Sbjct: 3   RRLVETELSLPPENGNKMRDS--YISETNFDTNMVIILAALLCALICALGLNSIVRCAFR 62

Query: 67  LGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKV 126
              RF  E P++TAARLAA GLKKR+L QIPV +YGS    IK T+CAICLGEFE G+ V
Sbjct: 63  CSRRFALETPDQTAARLAATGLKKRDLRQIPVAIYGSG-VNIKATECAICLGEFEDGENV 122

Query: 127 RMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSH 186
           R+LP CNHGFHV CIDTWLLSHSSCPNCRHSL   PV G      VSP +P   G+    
Sbjct: 123 RVLPKCNHGFHVSCIDTWLLSHSSCPNCRHSLREHPVTGSGTNPQVSPAEPSGNGAGRRD 182

[Close]

BLAST of Carg01139-RA vs. ExPASy TrEMBL
Match: A0A1R3JHP3 (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_16368 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.6e-48
Identity = 111/186 (59.68%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 7   RRLLATE----PVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLS 66
           RRLL TE    PV GN T +S  Y+ E N D +MV+ILAALL ALI ALG+NS+VRC L 
Sbjct: 6   RRLLETEVSLPPVNGNKTHDS--YINETNFDTNMVIILAALLCALICALGLNSIVRCALR 65

Query: 67  LGFRF-RERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKV 126
              RF  E PE+ AARLAA GLKKREL QIPV VYG        T+C ICLGEF  G+KV
Sbjct: 66  CSRRFATETPEQAAARLAATGLKKRELKQIPVAVYGKGGVSFPSTECPICLGEFMDGEKV 125

Query: 127 RMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSASSH 186
           R+LP CNHGFHVRCIDTWL+SHSSCPNCRHSLL      K + +  +  + PP+   S  
Sbjct: 126 RVLPKCNHGFHVRCIDTWLMSHSSCPNCRHSLLEHHEPAKTETSQQTSGRRPPE---SGR 185

Query: 187 VVVVVE 188
           VVVVV+
Sbjct: 186 VVVVVQ 186

[Close]

BLAST of Carg01139-RA vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-40
Identity = 88/158 (55.70%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 8   RLLATEPVPGNTTANS---SYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLG 67
           RLL      GN T+ S     Y  +MN DA+MV+ILAALL ALI ALG+NS++RC +  G
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  FRFRERPEETAARLAA--IGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVR 127
           F         AA   A   GLKKREL + PV  YGS   KI  T+CAICLGEF  G++VR
Sbjct: 63  FGL---SSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVR 122

Query: 128 MLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKG 161
           +LP CNH FH+ CIDTWL+SHSSCPNCRHSL+   V G
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAG 157

[Close]

BLAST of Carg01139-RA vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 84/161 (52.17%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 16  PGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRERPEETA 75
           P N        + +   D +MV+ILAALL ALI AL +NS +RCVL +  RF    + + 
Sbjct: 13  PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSN 72

Query: 76  AR---------LAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPN 135
           A           AA GLKK+ L QIPVG+YGS    +K T+C ICLG+FE G+KVR+LP 
Sbjct: 73  ASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPK 132

Query: 136 CNHGFHVRCIDTWLLSHSSCPNCRHSLLL----PPVKGKRD 164
           CNHGFHVRCIDTWLLS SSCP CR SLLL    P    +RD
Sbjct: 133 CNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRD 173

[Close]

BLAST of Carg01139-RA vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-37
Identity = 90/180 (50.00%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 5   LPRRLLATEPVP------------GNTTANSSYYVGEMNLDAHMVVILAALLFALIGALG 64
           + R LLAT+  P            G++ +N+       ++D HMV+ILAALL ALI ALG
Sbjct: 1   MARFLLATQATPTISATDANPRTLGDSVSNNKNIA---SMDTHMVIILAALLCALICALG 60

Query: 65  VNSLVRCVLSLGFRF--RERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAI 124
           +NS++RCVL    RF   E P +T A +A  G+KKR L  IPV  Y  +  K+K T+C I
Sbjct: 61  INSVLRCVLRCTRRFTPNEDPVDTNANVAK-GIKKRALKVIPVDSYSPE-LKMKATECLI 120

Query: 125 CLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLL--LPPVKGKRDGATVS 169
           CLG+F  G+ VR+LP CNHGFHV+CIDTWLLSHSSCP CR SLL    P  G R G  V+
Sbjct: 121 CLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDVA 175

[Close]

BLAST of Carg01139-RA vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 20  TANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRERP--EETAAR 79
           T   S YVG+ N DA++V++L+ LL AL+ +LG+NS++RC L            +    R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 80  LAAIGLKKRELSQIPVGVYGSDCAKIKG--TDCAICLGEFEVGDKVRMLPNCNHGFHVRC 139
           L   G+K++ L       Y ++   + G  T+CAICL EF   ++V++LP C+HGFHVRC
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTE-LNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRC 159

Query: 140 IDTWLLSHSSCPNCRHSLL 155
           ID WL SHSSCP CRH L+
Sbjct: 160 IDKWLSSHSSCPTCRHCLI 177

[Close]

BLAST of Carg01139-RA vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-24
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 8   RLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV----LSL 67
           RLL     P     NS+       L++ +VVILAALL ALI  LG+ ++ RCV    L+ 
Sbjct: 7   RLLVESNTPSPAIDNST-----AALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAA 66

Query: 68  GFR----FRERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKI-KGTDCAICLGEFEVG 127
           G R     + +  +     A  GLKK+ L  +P   +  +  +  K  +CAICL EF  G
Sbjct: 67  GNRTVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAG 126

Query: 128 DKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLL 156
           D++R+LP C HGFHV CIDTWL SHSSCP+CR  L++
Sbjct: 127 DELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 158

The following BLAST results are available for this feature:

BLAST of Carg01139-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930638.1	1.3e-104	100.00	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]
XP_023540727.1	9.3e-98	96.88	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971293.1	1.0e-96	94.79	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_022157309.1	7.5e-55	63.32	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
XP_041025774.1	5.2e-48	59.46	RING-H2 finger protein ATL74-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of Carg01139-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.0e-38	55.70	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	3.3e-37	52.17	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.6e-36	50.00	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	1.5e-26	43.88	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LM69	2.7e-23	42.68	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]

BLAST of Carg01139-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVU3	6.5e-105	100.00	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A6J1I6E6	5.0e-97	94.79	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1DW47	3.6e-55	63.32	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041...	[more]
A0A2I4E4V2	2.5e-48	59.46	RING-H2 finger protein ATL74-like OS=Juglans regia OX=51240 GN=LOC108986291 PE=4...	[more]
A0A1R3JHP3	9.6e-48	59.68	Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_16368 PE=4 SV=1	[more]

BLAST of Carg01139-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	7.2e-40	55.70	RING/U-box superfamily protein	[more]
AT3G10910.1	2.3e-38	52.17	RING/U-box superfamily protein	[more]
AT5G05280.1	1.2e-37	50.00	RING/U-box superfamily protein	[more]
AT1G49230.1	1.1e-27	43.88	RING/U-box superfamily protein	[more]
AT1G20823.1	1.9e-24	42.68	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 108..149 e-value: 4.3E-7 score: 39.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 107..150 e-value: 6.1E-14 score: 52.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 108..150 score: 11.766381
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..154 e-value: 5.3E-21 score: 75.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..181
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 7..186
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 7..186
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 108..150 e-value: 2.60377E-18 score: 72.6445
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 103..156

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01139	Carg01139	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01139-RA:1	Carg01139-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01139-RA:cds	Carg01139-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01139-RA	Carg01139-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane