Carg01057-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01057-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 1-like
Location	Carg_Chr06: 1431020 .. 1432140 (+)
Sequence length	690
RNA-Seq Expression	Carg01057-RA
Synteny	Carg01057-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGGTTTGGCATCTGGGTTTTTAAAGATTCTTGCTCTAATCGACTCATTTATCAGTTTTCGAATCTGTTTCTTGTACTGTTTGATGTCTGTTTAATGTCGGTCTAGTGCTAAAACGGTGGATGTGAATCGAGATGGGGTTTTTGATTCATTTCTGTTGCTTAATCTTTTTAGCGTCTGATCATTGGATTTCACTTATTCCCCGTTCTAGAACTTCCCTCAACCCTATATTCATTAAGTAATTTTGTGAGAGATTGAAGCATTTTCTCTTGTAGTTCCTGTCTTGCATCTTTTATCCTGTCTCTTGTCTGATGAATTATGTTGTTTTTTGTTGAACTTTTGCAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATGTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCGATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACATGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGAATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGATCGAACGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGGTAATAAACACATGATCCATAAGAATTTTGATCCGTTCCATGTGCATTCATATTTATCCATTTACTAAATCACACTCTTCTCTTGATTCAGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTCTCTATGTTGATGCTATAA

mRNA sequence

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATGTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCGATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACATGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGAATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGATCGAACGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTCTCTATGTTGATGCTATAA

Coding sequence (CDS)

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATGTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCGATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACATGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGAATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGATCGAACGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTCTCTATGTTGATGCTATAA

Protein sequence

MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML

Homology

[Close]

BLAST of Carg01057-RA vs. NCBI nr
Match: KAG6596403.1 (Protein FAR-RED ELONGATED HYPOCOTYL 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027944.1 Protein FAR-RED ELONGATED HYPOCOTYL 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST
Sbjct: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. NCBI nr
Match: XP_022948410.1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucurbita moschata] >XP_022948418.1 protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucurbita moschata])

HSP 1 Score: 444.1 bits (1141), Expect = 7.2e-121
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSKGNPNV+CIDEGLTPESVKDSNSFSDES+SATSVFCGAKLELNQALSCT DSSEST
Sbjct: 61  VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHML LDSHEEHVNDDLEQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. NCBI nr
Match: XP_023540032.1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 212/229 (92.58%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFY ISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH GLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYAISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHAGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSKGNPNVMCID+G TPESVKDSNSFSDESDS TSVFCG KLELNQALSCTHDSSES 
Sbjct: 61  VQFSKGNPNVMCIDKGSTPESVKDSNSFSDESDSVTSVFCGVKLELNQALSCTHDSSESN 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HF VGSSTAMESSSTEQEVAFARGEN+MEAIHKIQ+HMLELDSHEEHVNDDLEQCTE+EL
Sbjct: 121 HFSVGSSTAMESSSTEQEVAFARGENEMEAIHKIQKHMLELDSHEEHVNDDLEQCTEKEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLF SN LN NTYVLSSGRWTVNHEAQSR RT TID+EFEQFFSMLML
Sbjct: 181 EDLFHSNQLNTNTYVLSSGRWTVNHEAQSRARTATIDQEFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. NCBI nr
Match: XP_022971458.1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 [Cucurbita maxima] >XP_022971459.1 protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X2 [Cucurbita maxima] >XP_022971460.1 protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 212/229 (92.58%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKH NEA  SKSVFLH GLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHINEAFSSKSVFLHGGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSK N NVMCIDEG TPES+KDSNSFSD+SDSATSVFCGAKLELNQALSCTHDSSEST
Sbjct: 61  VQFSKSNLNVMCIDEGSTPESLKDSNSFSDQSDSATSVFCGAKLELNQALSCTHDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFA  E++MEAIHKIQEHMLELDSHEEHVNDD EQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFASVESKMEAIHKIQEHMLELDSHEEHVNDDREQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTY LSSGRWTVNHEAQSR RTPTID EFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYALSSGRWTVNHEAQSRARTPTIDLEFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. NCBI nr
Match: XP_004137783.2 (protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucumis sativus] >KGN58861.1 hypothetical protein Csa_002447 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 3.5e-83
Identity = 176/256 (68.75%), Postives = 193/256 (75.39%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEIS----------KKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH 60
           MEEKE NP EINSFY IS          KKRKLPAEHLGLPSPKHKH +E   SKS FL+
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGLPETELMTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQAL 120
            GLPETE M VQF K N NV+C DE   PESVKDSNS S+ESDSATSVF GAK ELNQA+
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 SCTHD------------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHM 180
           +CTHD            SSES HF V SSTAMESSSTEQE AF  GEN+ME I K+QE +
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LELDSHE-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT 230
           LELDSHE     E+ NDD +QCT+QELE+LF SNGLNPNTY+LSSGRW +NHEAQSR R 
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

[Close]

BLAST of Carg01057-RA vs. ExPASy Swiss-Prot
Match: Q8S4Q6 (Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 66/234 (28.21%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKH--KHSNEASPSKSVFLHDGLPETEL 60
           ++     P+EINSF+           H+ + S K+  K        K  F  D   E  L
Sbjct: 6   VDNNNEKPSEINSFH-----------HMIISSSKNVLKMEEVEVSKKRKFQTDQSDELSL 65

Query: 61  MTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSE 120
           + +       NV C +       +    S S   +S TS+ C   +E+ +  S       
Sbjct: 66  LPLSKHTCFANVACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESS------- 125

Query: 121 STHFCVGSSTAMESSSTEQEVAFARGENQMEAI-HKIQEHMLELDSHEEHVNDDLEQCTE 180
                 GS    +  S E  + +  G   +E    K+ E++L LD  EE   +D + C+ 
Sbjct: 126 ------GSCGEDKMISFESHLDYIYGTQNLEDFSEKVIENILYLDEQEEE-EEDAKGCSS 185

Query: 181 QELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT--PTIDREFEQFFSMLML 230
                       N   +VLSSGRWTVN +  +   T  PTID+EFEQ+FS LML
Sbjct: 186 ------------NAAKFVLSSGRWTVNQDDSTLHETKKPTIDQEFEQYFSTLML 202

[Close]

BLAST of Carg01057-RA vs. ExPASy Swiss-Prot
Match: A8MR65 (Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE OS=Arabidopsis thaliana OX=3702 GN=FHL PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-06
Identity = 65/217 (29.95%), Postives = 103/217 (47.47%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVMCID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N    D
Sbjct: 29  DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMENTKTSD 88

Query: 76  EGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSESTHFCVGSSTAMESSS 135
           E                  S+++ F G  L + +      DS  ST    GSS++  +++
Sbjct: 89  EA-----------------SSSASFTGPSLYMFK------DSIYST----GSSSSGYAAT 148

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE   +  +H E +  D E   E +L+++     LNP  +
Sbjct: 149 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 201

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 209 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 201

[Close]

BLAST of Carg01057-RA vs. ExPASy TrEMBL
Match: A0A6J1G9S1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452097 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.5e-121
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSKGNPNV+CIDEGLTPESVKDSNSFSDES+SATSVFCGAKLELNQALSCT DSSEST
Sbjct: 61  VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHML LDSHEEHVNDDLEQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. ExPASy TrEMBL
Match: A0A6J1I6X2 (protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470174 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.6e-112
Identity = 212/229 (92.58%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKH NEA  SKSVFLH GLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHINEAFSSKSVFLHGGLPETELMT 60

Query: 61  VQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSEST 120
           VQFSK N NVMCIDEG TPES+KDSNSFSD+SDSATSVFCGAKLELNQALSCTHDSSEST
Sbjct: 61  VQFSKSNLNVMCIDEGSTPESLKDSNSFSDQSDSATSVFCGAKLELNQALSCTHDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFA  E++MEAIHKIQEHMLELDSHEEHVNDD EQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFASVESKMEAIHKIQEHMLELDSHEEHVNDDREQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTY LSSGRWTVNHEAQSR RTPTID EFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYALSSGRWTVNHEAQSRARTPTIDLEFEQFFSMLML 229

[Close]

BLAST of Carg01057-RA vs. ExPASy TrEMBL
Match: A0A0A0LFJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.7e-83
Identity = 176/256 (68.75%), Postives = 193/256 (75.39%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEIS----------KKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH 60
           MEEKE NP EINSFY IS          KKRKLPAEHLGLPSPKHKH +E   SKS FL+
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGLPETELMTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQAL 120
            GLPETE M VQF K N NV+C DE   PESVKDSNS S+ESDSATSVF GAK ELNQA+
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 SCTHD------------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHM 180
           +CTHD            SSES HF V SSTAMESSSTEQE AF  GEN+ME I K+QE +
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LELDSHE-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT 230
           LELDSHE     E+ NDD +QCT+QELE+LF SNGLNPNTY+LSSGRW +NHEAQSR R 
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

[Close]

BLAST of Carg01057-RA vs. ExPASy TrEMBL
Match: A0A6J1F8W9 (uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC111441892 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.2e-82
Identity = 174/256 (67.97%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEIS----------KKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH 60
           MEEK+ NP EINSFY IS          KKRKLPAEHLGLPSPKHKH NE  PSK  FL+
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGLPETELMTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQAL 120
           DG PETE M VQF KG+ NV+  D+G +PES KDSNSF +ESDSATSVF GAK ELNQA 
Sbjct: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120

Query: 121 SCTHD------------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHM 180
            CT+D            SSESTHF V SSTAMESSSTEQEVAFA GEN++E +HK+QEH+
Sbjct: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180

Query: 181 LELDSHE-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT 230
           LELDS E     E+ +D+ EQCT+QELEDLF SNGL+PN Y+LSSGRWTVNHEAQS  R 
Sbjct: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240

[Close]

BLAST of Carg01057-RA vs. ExPASy TrEMBL
Match: A0A5A7TMJ2 (Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001600 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.4e-82
Identity = 169/250 (67.60%), Postives = 190/250 (76.00%), Query Frame = 0


Query: 5   EHNPTEINSF--------YEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPET 64
           E NPTEINSF        Y+++KKRKLPAEHLGLPSPKHKH +E   SKS FL+ GLPET
Sbjct: 68  EENPTEINSFYIISKLNPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLPET 127

Query: 65  ELMTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHD- 124
             M VQF K N NV+C DEG  PESVKDSNS S+ESDSATSVF GAK ELNQA++CTHD 
Sbjct: 128 GHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTHDT 187

Query: 125 -----------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLELDSH 184
                      SSESTHF V SSTAME  STEQE AF  GEN++E IHK+QEH+LELD H
Sbjct: 188 STTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELDGH 247

Query: 185 E-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDRE 230
           E     E+ N D +QCT+QELE+LF SNGLNPNTY+LSSGRW +NHEAQSR R PTID+E
Sbjct: 248 EDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTIDQE 307

[Close]

BLAST of Carg01057-RA vs. TAIR 10
Match: AT2G37678.1 (far-red elongated hypocotyl 1 )

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-09
Identity = 66/234 (28.21%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKH--KHSNEASPSKSVFLHDGLPETEL 60
           ++     P+EINSF+           H+ + S K+  K        K  F  D   E  L
Sbjct: 6   VDNNNEKPSEINSFH-----------HMIISSSKNVLKMEEVEVSKKRKFQTDQSDELSL 65

Query: 61  MTVQFSKGNPNVMCIDEGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSE 120
           + +       NV C +       +    S S   +S TS+ C   +E+ +  S       
Sbjct: 66  LPLSKHTCFANVACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESS------- 125

Query: 121 STHFCVGSSTAMESSSTEQEVAFARGENQMEAI-HKIQEHMLELDSHEEHVNDDLEQCTE 180
                 GS    +  S E  + +  G   +E    K+ E++L LD  EE   +D + C+ 
Sbjct: 126 ------GSCGEDKMISFESHLDYIYGTQNLEDFSEKVIENILYLDEQEEE-EEDAKGCSS 185

Query: 181 QELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT--PTIDREFEQFFSMLML 230
                       N   +VLSSGRWTVN +  +   T  PTID+EFEQ+FS LML
Sbjct: 186 ------------NAAKFVLSSGRWTVNQDDSTLHETKKPTIDQEFEQYFSTLML 202

[Close]

BLAST of Carg01057-RA vs. TAIR 10
Match: AT5G02200.1 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 65/217 (29.95%), Postives = 103/217 (47.47%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVMCID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N    D
Sbjct: 9   DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMENTKTSD 68

Query: 76  EGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSESTHFCVGSSTAMESSS 135
           E                  S+++ F G  L + +      DS  ST    GSS++  +++
Sbjct: 69  EA-----------------SSSASFTGPSLYMFK------DSIYST----GSSSSGYAAT 128

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE   +  +H E +  D E   E +L+++     LNP  +
Sbjct: 129 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 181

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 189 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 181

[Close]

BLAST of Carg01057-RA vs. TAIR 10
Match: AT5G02200.2 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 65/217 (29.95%), Postives = 103/217 (47.47%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVMCID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N    D
Sbjct: 29  DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMENTKTSD 88

Query: 76  EGLTPESVKDSNSFSDESDSATSVFCGAKLELNQALSCTHDSSESTHFCVGSSTAMESSS 135
           E                  S+++ F G  L + +      DS  ST    GSS++  +++
Sbjct: 89  EA-----------------SSSASFTGPSLYMFK------DSIYST----GSSSSGYAAT 148

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLELDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE   +  +H E +  D E   E +L+++     LNP  +
Sbjct: 149 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 201

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 209 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 201

The following BLAST results are available for this feature:

BLAST of Carg01057-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596403.1	1.2e-123	100.00	Protein FAR-RED ELONGATED HYPOCOTYL 1, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022948410.1	7.2e-121	98.25	protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucurbita moschata] >XP_022948418.1 ...	[more]
XP_023540032.1	3.6e-112	92.58	protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971458.1	1.4e-111	92.58	protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 [Cucurbita maxima] >XP_022...	[more]
XP_004137783.2	3.5e-83	68.75	protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucumis sativus] >KGN58861.1 hypothetical...	[more]

BLAST of Carg01057-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S4Q6	2.9e-08	28.21	Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE...	[more]
A8MR65	2.8e-06	29.95	Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE OS=Arabidopsis thaliana OX=3702 GN=FH...	[more]

BLAST of Carg01057-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9S1	3.5e-121	98.25	protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I6X2	6.6e-112	92.58	protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A0A0LFJ8	1.7e-83	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1	[more]
A0A6J1F8W9	3.2e-82	67.97	uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC1114418...	[more]
A0A5A7TMJ2	5.4e-82	67.60	Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. ...	[more]

BLAST of Carg01057-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37678.1	2.1e-09	28.21	far-red elongated hypocotyl 1	[more]
AT5G02200.1	2.0e-07	29.95	far-red-elongated hypocotyl1-like	[more]
AT5G02200.2	2.0e-07	29.95	far-red-elongated hypocotyl1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
None	No IPR available	PANTHER	PTHR37723:SF1	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..229
IPR037766	Protein FAR-RED ELONGATED HYPOCOTYL 1	PANTHER	PTHR37723	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..229

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01057	Carg01057	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01057-RA:3	Carg01057-RA:3	exon
Carg01057-RA:2	Carg01057-RA:2	exon
Carg01057-RA:1	Carg01057-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01057-RA:cds	Carg01057-RA:cds	CDS
Carg01057-RA:cds	Carg01057-RA:cds_2	CDS
Carg01057-RA:cds	Carg01057-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01057-RA	Carg01057-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0051457	maintenance of protein location in nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus