CaUC11G202620.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G202620.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr11: 2132830 .. 2139148 (+)
Sequence length1092
RNA-Seq ExpressionCaUC11G202620.1
SyntenyCaUC11G202620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTTAAAATGGATTGAATTTTTTCATAAAAATTAGAAATTTGCCTTGAAGCACCATGGACATTTGAGGAGCATCACAATCAAAGATCATCCAAATGGAATCTAAAAATTTGAGATCAAATCCATGAGATGATTCAGCACAACAAAGAATTGTTTGAAACTATTATTGAATTATATGAATGTTGATACATTAGAATCTATGCTTATAATACAAAATATACTAATCCTCAATTCAAAACATTCACACCTAAACTTTTGTATTCCTATATCCCATCCTGATTCACAAAGAACTACTACATGAATTTCTGATGTGTTTAAATTTCTGTGTAAGAGGAACTTTCACCATTGTATGACTATACAATATGTACAAAACACAAACATTCACTTAAATAATCACTTGTGCTTCTGTTTCCCAGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGGTGCGAAAATAACGACGCCCATACCGTAATCGTATGATTTTGCAAGAACCCTGGTGAAGTCCCACAGCCAAGTGTTCTCTATTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTATTCATACAATTTGCACTTGATACCATAATATAACTTGATTTGGGTAGTCTGGATTTTTAATATTTTGTTGGTTAAATTTTGAGTGAAAAATTAGTTTGTTTGTGTTATATACTAATTATATGAGTGGTTAAAATGGATTGAATTTTTTCATAAAAATTAGAAATTTGCCTTGAAGCACCATGGACATTTGAGGAGCATCACAATCAAAGATCATCCAAATGGAATCTAAAAATTTGAGATCAAATCCATGAGATGATTCAGCACAACAAAGAATTGTTTGAAACTATTATTGAATTATATGAATGTTGATACATTAGAATCTATGCTTATAATACAAAATATACTAATCCTCAATTCAAAACATTCACACCTAAACTTTTGTATTCCTATATCCCATCCTGATTCACAAAGAACTACTACATGAATTTCTGATGTGTTTAAATTTCTGTGTAAGAGGAACTTTCACCATTGTATGACTATACAATATGTACAAAACACAAACATTCACTTAAATAATCACTTGTGCTTCTGTTTCCCAGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGGTGCGAAAATAACGACGCCCATACCGTAATCGTATGATTTTGCAAGAACCCTGGTGAAGTCCCACAGCCAAGTGTTCTCTATTTTTGGCCTCAAAGTTTGAGCAAACTAAAACAAGAGTAGAATAGAAACTCAGTAAGAAACCAGGGGAAGCATGAGAGGGGAGGGGAACATGAACATTCAACCTTACCAAAATCAATCCCCATCCGGTTGGAAGGAAGGCAAGAGAGCAGATGACCATGTCCTTTAGAGATAATTGACAGACGACGGATAGAGAAATAATTACGGCTAGAACGCCGAGGAAGAGAAATGCTTTGAATAGTCTGAATGCAAAATGATAGTTTGCACTGAATTGCTGCTTCCCCAGGTTTACTGCCTATATTTGCACAGCAAGTGTATCATGTCATTGACAAGAGAGACCACAACTTTTTGTTGAACAGATGTTAAGATTAAGGCTTTAAAAAAAAGGAACTAATTTTGGCTAATGTCATATCTCATTGGAATTGGAATTACACAATCCTTGTCCACATTTTTGGAAGGAAAGTAACTGATAGATAAAGGTTGTGAAGTTAAAAGTGAAACTAAGATATTAACTAGTCCTAAAGGCCACAAAATGAAGTACCAGCTGTACTTCCCAGTTTCCATTTTCCAAGAAGGCTGTAAAGTAAAGGTAATTTAAAGTATAAGAAAGCTGGAGAACTAACCTTGACAAGTAAGAAAATTGCAGCAATCACAGCCCAAGAAAGCACATAAACCAGAAAATTTCTGCTATGTTGGGAGATGTCTAGGTGATACACGAGTCCGTACTGATACATGAAGAACCTTAACGAGAGAAGTACTTCAATCAACCTGGAAACAAGTCCTGAATGACGAAGGTGGGCTTGTTCGTCGTCCCACCAAGACTGCCAACTTTTGTCCTGCTGGACTCCTATACCTCCTTGCTGTTTAATCCACTTATTCCACTCTTTCCAGTCATCTACTATCTTGGCCCAACTGAACCCAGAGGGATTGAATAAAAATGGTGCAAATAACCAAGTGATTGACATGAACCAGATGGAGTAAGTGATCAACAGATAAGCCATGCTGCTCTGATATGAACGTCTGAACAAATCATAGACTACTAACAGAAGCAGTAGCTCGAACCCTTTAACGAAGTGACTTCTCGAATACAGTCTGTAGTTTTCAGTAAAACTGGCATAAAAGACCACTACCTTACGCCCAGTAGGTCTGTACTTTGCACCCCCATGAAGTATTGTGCGGCCAAAGTAATGAGTTTTTGTTCCTAGTGAAAATGTGAAGAAAACAACTGCCAACTGCAACTGCATGAGGATGAAATCTTTGAGGGCTGTAAGGAATCCTCTTTCAAGTCCAATTTCCATGACCATTGGTAAGCCTGTAAGGAGCCCAAGCTGTATAAATGACTGTGAAGCAAGAGCTGTTTCCAAAGATCGGACATTCTGCATTCTAGCTCCAAGAAGAAGAGCTTTTTCCAACCCACTTAGAACAAGATATAGTTGTCCGTAGAGGAAAACATAAATTCCAAGTACTGATATCTGTGCAGTGAATTGGCAGGTAGTTTGCGAAACCAATCAGTGAGATGGTACTAATAAAGGGAAAGAAAACAATTAAAGAGAGTTACGTTACCAGGCTACTGAAATAGTATCCAATTGTAGTGTAATAACAAGAGAGCATCCTGAAGAAATCGAATCGTTGCCCAAGGCGATATATATCCCGGCTTAGAGTTTGTTCACTGTTTCCATTTGCTATCTTAGCTTCAAACTTGGAGATCTGATTCAGTCCTACATCACGGCCTTTGCCTATTTGCATGTACTCATGGTATGTAATATATCCCCGACGTAATGTAGAGTTAAATCCTATCCATAAGAAGCATTTGCATGTCAGCCATGATCAACACAATGGACAGAATCGAGCCACTAGATCTTACCTGCATAAACATCTTCACTCAAGTTAATGGTTTTTGATGCTTTGCTGATGCCACCTCTCGTAATGTGAAACACCCTGTCAAACACATCTGGGTGTCCGTAGTGAAATCGTACCCTGTGGGCAGCATTCCAAAATAGTTTTGATCAGGAAAAGAAAAAAGCATGATTAGTCATGCATTCGTGTCGAAGATAGAAACATGATTACTGCATTCCAATTGGCTGTTTTTGCCTTAATTGTCAAAACATCAATCTCATTAATTGGTGTAACTGTTGTATTTGCTTCTATTTGAAACATAGAAACAAATTCCAAAACTGGATTTTTCTTGCCAGGAGGGGGGAGGGAGGGGCCACTACTAGAAGTTCAACCCCTAATTATTGCCCTAAATTGGATAATGAGAACGCAGAACCAACAAATACATTACCTGAGAGGATTGGCAAGAATTCTTTGACCAATTGTGACAAAGCTCGTCTCTTGATATGACATGAACCATGCCAAGGAAGAAACACTGCAGTTCAGGTTAAGAAAAATCCAGCTTAATAAATGATCTTTAACAACCATGGTACACATTTCCGCCATAGAAAAATCTTTCAATTTCTTATATGTTGAAACAGGTTATGGTGCAAAATTACATCTGGGTGGTTTCCTATTACTCTAACAATGAAATATCAGACAAACAGAGAGTAACAAAAGCAAATCTTTGAACTGTTCCTAATACTCAAATAACAATAATGAATCCAGTAACAATGCACAATCCGTCAATTATTTGAAAATCTATAAGTTGGATGCGATCAGCACTGAAATTATGACAACTTGACATAAGTTTTTAGTAATGCCATCATAGAGGTCCAACTTTGTTGATCCAGAGCAGTTTGACCGAATGTTGGTGTGACATGATTAATTCACAATTAATTGATCATAGCAGTTAATCTAACCTTCCAGTGAATATGTGCTCCCTCAAACCCAGAATTGCAGGCGGCTTCCGTACTTTGTGTTTAAAAAATTCTTGAAGAAGATTTCTCATCTTTAGCGCCTCTTCCAAATAATTATCCTGGTGAAGCACACACCATAAGGATAAGCGTGGAACTATTAGTCAGGTTAGAAGAGGAAGACCTACCTGGTTCATATCAACCGTTTGAAGAGCTTCACCACGTGTGAAAATAATGGCATGATTTTGGTTTTCAGGCTTCCCTTCTCCAAGGTGTGGCTGACCAGGAAGCTTAATGCTGTATATTTCCTATAAAAGGAGATTTACGGTGTGAAAGATTTATAACACGATGATTGGATGAACTACAAATGAAATGAAATTCATTTGCAAATATTCAGTGTCGTACAACATATGTAGGTAAGTAAACGACCAACAGATATATTATGGTGGTGTTCTTTAATGAATTGTGAATCTACTGCCATAAAGTAGGCCAAAAACTATGGTTCCGATCATTTACTAACAAGGATGTTATGATCCTTACTCTTGATGAATGCTTATGATTTATATGATTACAAATAGTTCGACGATAGTCTTTTCTAGTGACGTATATAGATTTTCACAAGATTGTAACCACATGAGATTTGTCAGCCCTCTTTTTATCTAATCCTTCCAAGCATAGTGACCTCTTAATACAAAAGAGAGCAGAACCTTGTGCAACTGTGTTACCAGTAACTCTTTCTATTCATAGTGTGAGATTGGATTGTTTACAATATTAGGAATAGGACCCGATAACATGGGAAGAGCAAAAGAATGTAAAATATTATTTAGCAAGAACCCAGTACTTATTTGAGCTAGGTTTGTAAAATTATATATCATACATGCATTAGGACATTAAGACAAAAATAAGAAATTGTATCTTTAAACAAGACTACATAAATTATATTTAACCTTAAAGTTTCAACATCTAGTACAAGTGGGAATGAATTCTCATAATACCAGTGGAAAGTGCCATCTGGGAACCTACATTAATCTTGTTTTTAGGCACGTTGTAACTTAACTCAATGAAGCATAATGCATGATAGTTGGGTTCAAATGTCTTTTTATCATCTCCATCATAAATAGGAAGAACAAATATTGTCATATAGCATAACCTATGAAACATAGATACTTCATGTGAGGCGGAAAATCAGTATCAAATACGTATCAAATACCAATACTTCCAGATGCTTCCTAGATACATATCTGATACGCGATTTGGCTGTCTATTTTTTTAACTATATATATATATGCATGTTCCCTTCCAAAACTAAGTAGCACATCTAAAAAACTCACTACCCCGACCCAAAACTGAAAGAAAGAAAAATGAAAAACTAAACCCTAGAATCATGTAATCTTCATCTTCACGCCTGAGTCCCTTAACGCAAAAAATAACCCACTTTCTTATCTTACAACAATTCAGTGAAGAAGTTCTTCATTTATCTTCGTATTTCTCTCTCTAATCTTCTGCTTCTTTGATTGTTTGACTCTGATGCACCACCAATATTTTCTATGGTATTTTATTGACTATTGTGTTTCAATATCTCTTATGTTGTCTTTTGTATTGTATTTTGTATTATTGTTATTAACTTTGACATTTTCTGCTTTTAAGTGGATTGCACTTCGCATTAATGTTAAATTTACATAGATCCTGGTTTTTTAAATTATTAAAAAAAAACCATATCCTCAACATATTCATATCCTTGCTTTTTAGAAATTGACATATCGTTGTATCTTATCATATCTATTTCTCGTATTTGTATCTGTGCTTCATAGAGCATAACATATGGATTAGTCTTATTCAATAATATGTTAATTTTACAATATTTAAATGATATTTACCTGATCAAGACCATTTACGGCTTTAATTAACTTAGATGAATAAACTTTCTGATTGTCCGGCATTTCTTTCTCCTCAACATATGCAACGCGAAGAGATGGATACCTTCGAGGAAGGTTTAGACAGGATGAGAGTCATGTTGATTCCTAATACTTCAAAGTTTGTAATAGCTTTTGCTTGCGAGAAGAAAGTTACCTTATCATCAAATCAAGAATGTCCTTTTCACGGGGATCACCACAAGCTTTTTGTGCTCCAAAAGATTGGCAGGACAACACATACGTAA

mRNA sequence

ATGAGTGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGATAAAGGTTGTGAAGTTAAAAGTGAAACTAAGATATTAACTAGTCCTAAAGGCCACAAAATGAAGTACCAGCTGTACTTCCCAGTTTCCATTTTCCAAGAAGGCTGTAAAGTAAAGTCATCTACTATCTTGGCCCAACTGAACCCAGAGGGATTGAATAAAAATGGTGCAAATAACCAAGTGATTGACATGAACCAGATGGATAAAACTGGCATAAAAGACCACTACCTTACGCCCAGTAGGTCTGTACTTTGCACCCCCATGAAGTATTGTGCGGCCAAAAAAACAACTGCCAACTGCAACTGCATGAGGATGAAATCTTTGAGGGCTGTAAGGAATCCTCTTTCAAGTCCAATTTCCATGACCATTGGTAAGCCTGTAAGGAGCCCAAGCTGTATAAATGACTGTGAAGCAAGAGCTGTTTCCAAAGATCGGACATTCTGCATTCTAGCTCCAAGAAGAAGAGCTTTTTCCAACCCACTTAGAACAAGATATAAAGATTTCTCATCTTTAGCGCCTCTTCCAAATAATTATCCTGGTGAAGCACACACCATAAGGATAAGCGTGGAACTATTAGTCAGGTTAGAAGAGGAAGACCTACCTGGTTCATATCAACCGTTTGAAGAGCTTCACCACATGAATAAACTTTCTGATTGTCCGGCATTTCTTTCTCCTCAACATATGCAACGCGAAGAGATGGATACCTTCGAGGAAGGTTTAGACAGGATGAGAGTCATGTTGATTCCTAATACTTCAAAGTTTGTAATAGCTTTTGCTTGCGAGAAGAAAGTTACCTTATCATCAAATCAAGAATGTCCTTTTCACGGGGATCACCACAAGCTTTTTGTGCTCCAAAAGATTGGCAGGACAACACATACGTAA

Coding sequence (CDS)

ATGAGTGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGCAATAATAGTTTGGATATGCAAGTGCCTGTTGAACGCCTCGTTGAAGAGGAAACGAGTCTGGAAGTCTGATATATTTGGAAGCCATGCCAGAGTAGCTACAGATAAAGGTTGTGAAGTTAAAAGTGAAACTAAGATATTAACTAGTCCTAAAGGCCACAAAATGAAGTACCAGCTGTACTTCCCAGTTTCCATTTTCCAAGAAGGCTGTAAAGTAAAGTCATCTACTATCTTGGCCCAACTGAACCCAGAGGGATTGAATAAAAATGGTGCAAATAACCAAGTGATTGACATGAACCAGATGGATAAAACTGGCATAAAAGACCACTACCTTACGCCCAGTAGGTCTGTACTTTGCACCCCCATGAAGTATTGTGCGGCCAAAAAAACAACTGCCAACTGCAACTGCATGAGGATGAAATCTTTGAGGGCTGTAAGGAATCCTCTTTCAAGTCCAATTTCCATGACCATTGGTAAGCCTGTAAGGAGCCCAAGCTGTATAAATGACTGTGAAGCAAGAGCTGTTTCCAAAGATCGGACATTCTGCATTCTAGCTCCAAGAAGAAGAGCTTTTTCCAACCCACTTAGAACAAGATATAAAGATTTCTCATCTTTAGCGCCTCTTCCAAATAATTATCCTGGTGAAGCACACACCATAAGGATAAGCGTGGAACTATTAGTCAGGTTAGAAGAGGAAGACCTACCTGGTTCATATCAACCGTTTGAAGAGCTTCACCACATGAATAAACTTTCTGATTGTCCGGCATTTCTTTCTCCTCAACATATGCAACGCGAAGAGATGGATACCTTCGAGGAAGGTTTAGACAGGATGAGAGTCATGTTGATTCCTAATACTTCAAAGTTTGTAATAGCTTTTGCTTGCGAGAAGAAAGTTACCTTATCATCAAATCAAGAATGTCCTTTTCACGGGGATCACCACAAGCTTTTTGTGCTCCAAAAGATTGGCAGGACAACACATACGTAA

Protein sequence

MSAIIVWICKCLLNASLKRKRVWKSDIFGSHARVATAIIVWICKCLLNASLKRKRVWKSDIFGSHARVATDKGCEVKSETKILTSPKGHKMKYQLYFPVSIFQEGCKVKSSTILAQLNPEGLNKNGANNQVIDMNQMDKTGIKDHYLTPSRSVLCTPMKYCAAKKTTANCNCMRMKSLRAVRNPLSSPISMTIGKPVRSPSCINDCEARAVSKDRTFCILAPRRRAFSNPLRTRYKDFSSLAPLPNNYPGEAHTIRISVELLVRLEEEDLPGSYQPFEELHHMNKLSDCPAFLSPQHMQREEMDTFEEGLDRMRVMLIPNTSKFVIAFACEKKVTLSSNQECPFHGDHHKLFVLQKIGRTTHT
Homology
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BLAST of CaUC11G202620.1 vs. ExPASy TrEMBL
Match: A0A2P2NHY3 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 173 MRMKSLRAVRNPLSSPISMTIGKPVRSPSCINDCEARAVSKDRTFCILAPRRRAFSNPLR 232
           MR KSLRA R+P SSPIS+TIG+PVRSPS IND EARAVS D   CILA R  AF +PLR
Sbjct: 1   MRTKSLRAARSPFSSPISITIGRPVRSPSWINDWEARAVSSDSMLCILASRTNAFCSPLR 60

Query: 233 TRY 236
           TRY
Sbjct: 61  TRY 63

The following BLAST results are available for this feature:
BLAST of CaUC11G202620.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC11G202620.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC11G202620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2NHY32.6e-1473.02Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of CaUC11G202620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC11G202620CaUC11G202620gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2132830..2132836exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2133250..2133351exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2134021..2134122exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2134675..2134790exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2135093..2135178exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2135307..2135385exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2135420..2135633exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2137074..2137213exon
CaUC11G202620.1-exonCaUC11G202620.1-exon-Ciama_Chr11:2138903..2139148exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2132830..2132836CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2133250..2133351CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2134021..2134122CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2134675..2134790CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2135093..2135178CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2135307..2135385CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2135420..2135633CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2137074..2137213CDS
CaUC11G202620.1-cdsCaUC11G202620.1-cds-Ciama_Chr11:2138903..2139148CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC11G202620.1CaUC11G202620.1-proteinpolypeptide