CaUC10G186630.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G186630.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial
Location	Ciama_Chr10: 14516711 .. 14523481 (-)
Sequence length	311
RNA-Seq Expression	CaUC10G186630.1
Synteny	CaUC10G186630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAACCAAAGAGAAAATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTAAGTCTCTCTATCTCAGTACTTTTTTTTTTTTTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGTAATTTTTTTTTTTTTTTTTTTTTAATTATTATTATTGTGATCGTGTATGCGCTGCAATTGGTTCACGTTTCTCTCGATTTGCTTTTCTTTATCGACGGATTTTTTTGTTACTTTCGGCAACTTTGTTTAGTCCGTTGTATGTTTGATTTCATTCATTTTCCTGCCCTGTTTTTCATCTGACGAAATGGGGGAAAGAAGGATGATTTTTATTATCGAATCATGTTAAGAAATTTGGTCCAAAATATTTTGATTGGATGCTTTATGTTCTTTTTAGATTGGAAGTCTTGCAAGGGGAGGTGTTCTTTAATTTGAATTCAGATTTAAATGTTATTCAACAGTTTTGTTATATTATCGGATGGGATATACATTATATTTGACAATTAACTATGCATGGGGTTTCCAGTCGCTGACATGAAGGAAAGGAAACTCAAATGCAGTAAATTTATTAGAGGGTTAAGACCTTTAATGAAGAAATTCTCCACCGAGTTAAAGGTCGTGGAAGTTTTTTCACCTCTAATCTTATGCTTCTTCTTCTTTAATTAATTCTTTTTCTGGATGGTGGTCATGGAAGTTTTTCCACATCTAATCTTATGCTTTCTTCTTCTTTCTCTCCCCCCTCCCCCATTTTTTCTCTTCCTTCCTTTTCTTTTTTCACATGTTTCTCAGTGGGGGCGTGGGTGGGGGGACAAATTTCTTCCGTTTTTGGGGTGGGTTTACGTAAACTGTTGGAACTAAGCGAATTCAGTGCTGTGAATTTATTTCCTAGTAATCCACCATAGCATATATTTCTGATGCGTCGTTATATTTGTTGGGTACAGATATGTATTGTTATTTTTAAATACTATTTCAGACTTTATTGTACAAGCAAGGAAGGAAAAACTGTATGCAGGAGTGGTGTGATGCTTGTACTCCTTATGTTTGATCTCTCACCTTTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTTTAACTTCAGTCAATTTATACTTTTTCCTTGACTTCTCAGTATCTTAGTTGCATTATGGAATTATGCATTGTACTCTCATGTGTTACCCATTTATTTTTGTTTGGGTTTCGTTGTATGCAGGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTACTTCATTACAAGTTCTATGACATCTTTTGGAACCCTTTGCAATTGCTATTTGGGTTTTGATGAGGAAACTAGAACTGGATTATTCAGTGATGTCATGTACTGTTACTGTGTTCTAATAAAAATGGTGCTATGTTATATTTTCTTTGCATCTGTTTTTTTATTTATTTATATAGAATTATGCAAAATCTATACTCTACATGCATTTCTATATTTATATTTTTAAAAGAAAACAGTCAATCTTTAATTTCCAAGTAGTGGTGGATTTCTTGAGTTGATTTATAGTGCCTAGTGCGAGTTGTTTCCTTAAAATAAACTAATAAAGTATTGTTTTTGTGAATTTAGTTTTAAACATCATAGAGTTTCCAATAAATCAATGAATATGCCCCTATGCAAACTCAGTCATTACTATGGATGTGTTTTCTTTATTTGGATTAGACATTGTTGATAGTAATCAGAAACAAAAATTGATTAGCAGTCCTTATTTTCTCTGTTTACGTTGCTTGAACATAATGTTGAAAGTCAGACTCAGGTCATTGATAATGTTAAAATGTGGAAGCTGAACCATTTTAGCAGTTTTCCAAGCAAACTTACAGCTATTGTGTAACTAATAGATTTACTACTAACTCAAGAGCTAGTAACTAATATGCTCATAACTACCTCGTTCAGCTTGCTAGCAATATTTAGACCTATTTTAAACCTTCTCCTTTCTTTAATCCAACTCTCACATAACTTTGAAATGCTCCATTGCCAAATTTCAAACGGGGTGGTTCAATGACTTCAGTTGGTTGATCATCTCAAGGTTTTATGGATACTTCTGGCATAGAACTATTTTTTTGTTTTTTTGTTTTCTTTAGGATAAGAAACAGATGTATATTCATTAACAAAAGAGACAGCCTAAGGGCAGGGAGTTGAGGGAACCCCTCCTACAAAACTAATAAAGAAGAGTTCCAATTGTCAATAATCATAAGAAGACTATAATTACAAAAGAATTTGGTGTACTTACGCACTGCCAAGAGATTGTATGCTGAACAAAGGCCTAAAAAGAATCACAAGAAGCAAACTTATCTTCAAACATCCTGCTATTTCTTTCTTTCCAAAGGCACACAAGAGGATGGGTAGTACATCTCCAAAGGCTTCTGAAATGAGAGTAACGGAGCTGCCCATTTCTCTATCAAAAACCTCCAAATCCCACACTTGGTTTGAGTTCATCCAGCAAGTCCCTTTTTAGTACAAGTGGCAAAAGTATCTTGGTAGAACTGACAAGCGGTTGGGGGCGCCGTATCTTCTCGAAATCTAATCTTCCTCCCATCCCATCACCCGCTAGAAACTTAGTGAACTTAAAATTGCTCTTTTGTTTCGTAATTCTAGCCCATAATTTGGAATTCCTTTTATCTCTAGGAACGAGGAAGTTTCAGCCACAATTATCAACACCATAAATGGCACTAATGACATGTCTTCATAGAGCCTTTTCCTCGTAGCAAAATCCCCACATGATATCAGAAGAGCACTATTTTATTTATTATTATTATTTTTTTGCCAAAGAGAGCCAATGCCTAGCGCACCATAGACTGTTGTTGGGAGAGAGGTCTGACTCCAATTAACAAGATGGGTAGCTGGGTTACAAATGCCCCTGTCCCGCATAAAGTCTATCAATCTTTGCCAAGCAATTAACCGTTTTCATTGGGGCTTTTATAAGGAGAAATAATAAGGGAGACTATCGAGAACCAATTGAGCAAAAGTTAATCGACTCCTTTCGAAAGAGACAAACCTTGCCGCTTATCTATCTTCCTCTTAAATCTCTCCACAAGAGCTTCCTAGGCCATTGTAGCACCATACTTTCCCTCATGAGAGAACCTAATGAAGCTGTTTTGGAACGTTGAGTGATAAACCCAACCCAAGTAAGAAAAGCTTGGCAATGGACCACCAAGCCATGAAGTTCCCAACATTCCAAGAGCAACAGAGAAGGGTATCATCCACATATTGAAGGTGTGTAACCTCAATGGTCAGGTTACCAAAAGAGAGACCATTGATGATTATTCTTTCATTAAAATACTGCACAAGATTGGTGAAGGCGTCCCAACAATTGTGAAAAGGAAGGGGGAGTGGGGATTGCCTTGTGAAGACCCCTTTTAGCAACAATTTCCCCCTTGGGTATTCCATTAATGATGGTAGAGAAATTGGTTGAAGAGAGGCACCTCCATACATTTTTTCCTTTTGTAGAAACCTTTAAGCTTTAACGCCACATTTAGAAAGGCCCAACCAATTTTGACATAAGCTTGCTCGAGGTCAAGCTTTAGTAGACCTCTCCTTTTACCCACAGAATTCCACTCATCAAGGGCTTCTGAAGTAGTCCAAATGGCATCAAGAATTTGTCTCCCTTCCACAAGTGCCACTTAGGAGTCATTGACAATAATTGGTAGAAATTATGGATGATTGGATTCAACCTTAGAAATGATCTTGTAAAGGCAAGTCACCAAACTAATAGCGTGTGTTCACAAATTCTAGCTGCCTTCTTCTTCTTAGGAATCAAATGTAAGTAGAAATCGAGAATTTAAGGCTTTGTAACAGAGCCTTGTTAGCCAAATGGTTGTGGCGGTTCCACTATGAGTCCAATTCCCTTTGGCAAGGATCATTGCTAGTAAATATGGCCTCCATCCTTTTGAGTGGTTGACGAAAGGGGTCAAAGGCACCCATCATTATTTGTGGAAGGATATTTCTAAGGAGCTCCCTTCACTTTGGAGGATTAAGATTCCGAGGAAAGTGAAGTGTTTTACTTGGCAAGTTCTACATGGTCACACTAACGATGGATTGGCTTGTGACGAAGTTGCCCTTGGTCCATTTTGTTGTATCCTTTGTTGGAAGGTGAAGGAAGATTTTGATCACATTTTCTGGCTTTGTGATTTTGTGAGAGTTGTGTGGATTGTTCTTGGTTACTAGTGATATGATCAGTGAGTCCCTCTCCTCCATTTGCCTTTTCGGGAGAAGGGGTGCTTTTTATGGATGGTCGGTTTGGGTGTGTGCTGTTCTTTGGGTTTTGTCAGAAAACGGAATAATAGGATGTTTAGGGGGTTGAGGGGGACTCTTTTGATGTTTGGTCCCTTGTTTTAGATATCATGTTCCTCTTTGGGCTTTGGTTTGGAAGACCTTTTTTAACTATTCTATAGGTTCTTTTTTGTATAGTTGGGCCTCTTCCTTTGGAGGGATTTATCTTTCTCTTTTGTGGGGCTTGGTTTTGTGTATGCCCTTGTATTCTTTCATTCTCAATGAAAGTCGTTTCTATCAAAATTTGAAAATAAAAGAAAATTAGGGTTCAGGTCATTTATGGGACTGAGTAAAATTCAATAAACATTTAAAGTATCATTCAAACAATGCCTCCTTTCACTATACATGTGTCCTTGATAAGGTGACTCTTCATTTTTTTTTCTTTTTTTGAATCTTGATCATTTGTTCACTTTTATTTCTTTATTATTATTATTCTCTTTCCCAAATGGTTTTTTTATTCTGTGAAGTAACATCATTGTTGTGGACTCTTCAAAAGTTTTCCTAAAAAGAAGATAATCAACCACAACATAAATAAGTTACTTAATATTAAGCTATTTATTTTTCTATTCTAAACTTTGTTATTTATATTTATATTTCATTGTTATTTATCAAATGGAAACTTATGACACAATAAACTAAAGTTTCATTTAGATATGTATTTTGTTTGCCGAGTTAACAAGCTTGCCCACAGTAATTTCCTTCAACGTTGATGGCCTCCTCAAGGCATTCAATGAGGCTGGACTTTTTTGTCAGCATATTCTAAAAGTCCTCCACACAGCTCTCCCAAGGCCATAAAGACACCCTTGTTCCATAAATGCATGGGAATGTTCTGAAATTTAATCCATCCTCCATTTGAAGGGACAGCTGACATTCTTTCGTGCTTTTTAGCATCTCACCTTCCACTTTCATCATCATTGGGCAGAAGGTTCCCCATCCTCTGTTCGAAGCAAGAAGTCTGGCGATCTCTGTATCTGGGCACTTCAAGAAAGCTTTTATCTGGCTGGAATGGATTGATAATAAAGGGTGGTTGTGTTTGTAGTTGAAATATCTCCAGAATTCTGTTTCAGTCGTGAAAATCCCTCTTTGTAAACAATGAGGGTATTGTCCTAGCAGATCTTACTCACCTCAGTTCTCCTTATACTCAAAGAATCTGTTGTAGAAACTTGGTCTCAGGGTGGCAGGGCTATCAAAGTGTAAGGCCTTTTGTCACATCAGCATAAGATTGCTCCTTACTACTTTCCCCTCTGCTACTTGTCGTATCCTCTTTTCCATTCAGAAAATTGATGAGCACCCTTATGACGCCCAACGCTAGAAGTCTTCCCCCATGTTGCCTTTGCCCCTGGGGTTAACACTTTTGTGATTTCCAGGAAGTTTCCTCTTTAATTCGTCAGTTTCTGAACCCATACAAAGACCCAGTAGCAGTAAGTTTTTCTGAAGAACTGAGGTTTTGGCACATTCAAAATTTCTTCTAACGAGTCAATCAGCCAGACTAGTTATCTCCTCTCTGACTATAGAGAACTTTCTGTTTAGGTGAGATTCGGTAATCCTAATTGACTCCTGCTTTGTTTATTGAACTCACAGGTACCAACCTTGTTTTCTGTTCTTATGGTCAATTTCTTCGTGGTCGTCAACTTTATATATAGGCATGCCTAAATCCGTCGGAAACAAAGGGGTTAACTAGAGAAAGGTTGAGGAAGAAGGGGGTTCAGGCGAGAGCGGGAAGAGAAACAAGAGAGCATTCAACCCAAACAATACACAAACCTTAACTAGAGATGATCATGAACACAATCCACAGCTATAACACCACAAACGGTGAATTAGAAAAGAGTTCGTAACCACCACGGTCATACTACAGTGCAGCTTACTTCCCAGCTAATAAATTATAATCAAGTAATTTTTCACATCAAAGCTTGTCATTGGCATAGAACCTTCAGATCAGCTTCCAGTTGTTTGGATGTTGTTCTCAGAAACAGTTAAAAACTTTTTCTGGGGACTGATAAATATTCCTTGCTCGATTACTCCTTTATTGTGAAAATAATATTGTTTTTACTTATTTGTAAAATAATATATTCCTTTTATTCTGAACCCCTTTTGCATCAGGTCCTGATGGGCTCTTTGAGGTGAAGCATCAC

mRNA sequence

CGAGAACCAAAGAGAAAATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTCCTGATGGGCTCTTTGAGGTGAAGCATCAC

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTCCTGATGGGCTCTTTGAGGTGAAGCATCAC

Protein sequence

MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Homology

[Close]

BLAST of CaUC10G186630.1 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 3.1e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSNLLRAAVRGASRNS QPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. NCBI nr
Match: XP_011650608.1 (cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE8650204.1 hypothetical protein Csa_009645 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSNLLRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSN LRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 8.6e-47
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI +C+ILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-34
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL
Match: A0A1S3BPM0 (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSN LRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL
Match: A0A0A0L3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 3  MASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFYNL 62
          MASIRSNLLRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI +C+ILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CaUC10G186630.1 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 144.8 bits (364), Expect = 3.6e-35
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of CaUC10G186630.1 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-27
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWGPDGLFEVKHN 89

The following BLAST results are available for this feature:

BLAST of CaUC10G186630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905594.1	3.1e-49	98.98	cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]	[more]
XP_011650608.1	3.5e-48	95.92	cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE...	[more]
XP_008450167.1	5.9e-48	95.92	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
XP_023001309.1	8.6e-47	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
XP_023551866.1	1.9e-46	92.86	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC10G186630.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	5.1e-34	71.72	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CaUC10G186630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPM0	2.9e-48	95.92	cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0L3I0	1.4e-47	95.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1	[more]
A0A6J1KMD3	4.2e-47	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FPI8	1.2e-46	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1ERW3	1.6e-46	92.86	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]

BLAST of CaUC10G186630.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	3.6e-35	71.72	cytochrome c oxidase-related	[more]
AT4G37830.2	6.2e-27	63.64	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	PIRSF	PIRSF000277	COX_VIa	coord: 1..98 e-value: 9.6E-23 score: 78.5
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 34..88 e-value: 5.2E-6 score: 26.9
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..98
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..98 e-value: 4.6E-15 score: 57.3
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97
None	No IPR available	PANTHER	PTHR11504:SF6	CYTOCHROME C OXIDASE SUBUNIT 6A1-RELATED	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC10G186630	CaUC10G186630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC10G186630.1-exon	CaUC10G186630.1-exon-Ciama_Chr10:14516711..14516742	exon
CaUC10G186630.1-exon	CaUC10G186630.1-exon-Ciama_Chr10:14521900..14521942	exon
CaUC10G186630.1-exon	CaUC10G186630.1-exon-Ciama_Chr10:14522071..14522177	exon
CaUC10G186630.1-exon	CaUC10G186630.1-exon-Ciama_Chr10:14523353..14523481	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC10G186630.1-cds	CaUC10G186630.1-cds-Ciama_Chr10:14516711..14516742	CDS
CaUC10G186630.1-cds	CaUC10G186630.1-cds-Ciama_Chr10:14521900..14521942	CDS
CaUC10G186630.1-cds	CaUC10G186630.1-cds-Ciama_Chr10:14522071..14522177	CDS
CaUC10G186630.1-cds	CaUC10G186630.1-cds-Ciama_Chr10:14523353..14523464	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC10G186630.1-five_prime_utr	CaUC10G186630.1-five_prime_utr-Ciama_Chr10:14523465..14523481	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC10G186630.1	CaUC10G186630.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity