CaUC10G181650.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G181650.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cytochrome b559 subunit alpha
Location	Ciama_Chr10: 2692866 .. 2693936 (+)
Sequence length	360
RNA-Seq Expression	CaUC10G181650.1
Synteny	CaUC10G181650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCCCCCGACTGATTCTACCATAGAGGCCAACGATAGACAATAACTCCCCCCCGAACACAGCTTACAACTTTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGTACTGAGTTGGAATCCCATTCTAACTAAGGATTCTTGTGGTTCCGGAGAATCCAGCTACAGGAGAACCAGGAACGGAGAGCTTTCCCCCCTTTTCCGCCCGCCTCTTTGGTCTTAAGAATGCTGGTTTTAAGAATGAGTGATTGCCCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACAGCTAATGCGTTCCACTTATTGAACAGGGTTCTATGGTCGGTCCGCGACCCCTGGATACCGAAGGCGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGACGATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAACCCTAAGAGAGCCGCCGACTCCAACTACCGTCCATGTACGATCCATACTAGATCTGACCAACTGCCCATCCTACCTCCTCTACGTTCTTGACAGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGGGCCTGCATGAAGGAGTCAGATGCTTCTTCTATTCTTTTATTCTTTTCCTTGGCGTAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

mRNA sequence

ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAACTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

Coding sequence (CDS)

ATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGGAGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAACTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAA

Protein sequence

MINHRSNCRIGKMECYHIALYRLSSRVGDKRTRTADIRHRPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPPSQLGHPGLEPETSPVK

Homology

[Close]

BLAST of CaUC10G181650.1 vs. NCBI nr
Match: TYI86976.1 (hypothetical protein E1A91_D04G104800v1 [Gossypium mustelinum])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 4   HRSNCRIGKMECYHIALYRLSSRVGDKRTRTADIRHRPIFVSVESFSGMFRSSSPLLRKS 63
           +R+NCRIGK+  YHIAL+RLSSRVGDK TRTADIRHRPIFVSVESFSGMFRS SPLLRKS
Sbjct: 508 YRTNCRIGKIGYYHIALFRLSSRVGDKWTRTADIRHRPIFVSVESFSGMFRSFSPLLRKS 567

Query: 64  EPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIP 103
           EPPVQVQDTIITAWTIRHPT NRN+PI+RAELYQLSYIP
Sbjct: 568 EPPVQVQDTIITAWTIRHPTHNRNNPISRAELYQLSYIP 606

[Close]

BLAST of CaUC10G181650.1 vs. NCBI nr
Match: GER39682.1 (hydrolase [Striga asiatica])

HSP 1 Score: 137.5 bits (345), Expect = 7.5e-29
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 40  RPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS 99
           +P+FVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS
Sbjct: 86  KPVFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS 145

Query: 100 YIPPSQL 107
           YIPPSQL
Sbjct: 146 YIPPSQL 152

[Close]

BLAST of CaUC10G181650.1 vs. NCBI nr
Match: KAG8369579.1 (hypothetical protein BUALT_Bualt14G0028000 [Buddleja alternifolia])

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 40  RPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS 99
           +PIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAE YQLS
Sbjct: 66  QPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAEFYQLS 125

Query: 100 YIPPSQLGH 109
           YI PSQ+ H
Sbjct: 126 YISPSQVEH 134

[Close]

BLAST of CaUC10G181650.1 vs. NCBI nr
Match: EPS74528.1 (hypothetical protein M569_00245, partial [Genlisea aurea])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 42  IFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 101
           +FVSVESFSGMFRSSSPLLRKSEP VQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI
Sbjct: 3   VFVSVESFSGMFRSSSPLLRKSEPLVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 62

Query: 102 PPS 105
           PPS
Sbjct: 63  PPS 65

[Close]

BLAST of CaUC10G181650.1 vs. NCBI nr
Match: RYR67196.1 (hypothetical protein Ahy_A03g013504 [Arachis hypogaea])

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-25
Identity = 64/85 (75.29%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP-------- 111
           MFRSS PLLRKSEPPVQVQ+TIITAWTIRHPTRNRNDPIAR ELYQLSYIPP        
Sbjct: 1   MFRSSFPLLRKSEPPVQVQETIITAWTIRHPTRNRNDPIARVELYQLSYIPPRAKWSMHE 60

Query: 112 ---------SQLGHPGLEPETSPVK 120
                    +QLGHPGLEPETSPVK
Sbjct: 61  GVSLLFFSLAQLGHPGLEPETSPVK 85

[Close]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL
Match: A0A5D2VCA4 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D04G104800v1 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 4   HRSNCRIGKMECYHIALYRLSSRVGDKRTRTADIRHRPIFVSVESFSGMFRSSSPLLRKS 63
           +R+NCRIGK+  YHIAL+RLSSRVGDK TRTADIRHRPIFVSVESFSGMFRS SPLLRKS
Sbjct: 508 YRTNCRIGKIGYYHIALFRLSSRVGDKWTRTADIRHRPIFVSVESFSGMFRSFSPLLRKS 567

Query: 64  EPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIP 103
           EPPVQVQDTIITAWTIRHPT NRN+PI+RAELYQLSYIP
Sbjct: 568 EPPVQVQDTIITAWTIRHPTHNRNNPISRAELYQLSYIP 606

[Close]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL
Match: A0A7N0RFX0 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.3e-30
Identity = 73/97 (75.26%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 42  IFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 101
           IFVSVESF+GMFRSSSPLLRKSEPPVQVQDTIIT WTIRHPTRNRNDPIARAELYQLSYI
Sbjct: 13  IFVSVESFTGMFRSSSPLLRKSEPPVQVQDTIITVWTIRHPTRNRNDPIARAELYQLSYI 72

Query: 102 PP-------------------SQLGHPGLEPETSPVK 120
           P                    +QL HPGLEPETSPVK
Sbjct: 73  PRAKWSIHEGVRCFIYLFFSLAQLDHPGLEPETSPVK 109

[Close]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL
Match: A0A5A7Q4B9 (Hydrolase OS=Striga asiatica OX=4170 GN=STAS_16306 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.6e-29
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 40  RPIFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS 99
           +P+FVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS
Sbjct: 86  KPVFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLS 145

Query: 100 YIPPSQL 107
           YIPPSQL
Sbjct: 146 YIPPSQL 152

[Close]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL
Match: S8EEV4 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00245 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.4e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 42  IFVSVESFSGMFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 101
           +FVSVESFSGMFRSSSPLLRKSEP VQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI
Sbjct: 3   VFVSVESFSGMFRSSSPLLRKSEPLVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYI 62

Query: 102 PPS 105
           PPS
Sbjct: 63  PPS 65

[Close]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL
Match: K3Z2R1 (Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.4e-26
Identity = 65/86 (75.58%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 52  MFRSSSPLLRKSEPPVQVQDTIITAWTIRHPTRNRNDPIARAELYQLSYIPP-------- 111
           MF+SSSPLLRKSEPPVQVQDTIITAWTIR PTRNRNDPIARAELYQLSYIPP        
Sbjct: 1   MFQSSSPLLRKSEPPVQVQDTIITAWTIRQPTRNRNDPIARAELYQLSYIPPEPSGVCMK 60

Query: 112 ----------SQLGHPGLEPETSPVK 120
                     +QLGHPGLEPETSPVK
Sbjct: 61  ESDASSILFLAQLGHPGLEPETSPVK 86

The following BLAST results are available for this feature:

BLAST of CaUC10G181650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYI86976.1	1.2e-42	88.89	hypothetical protein E1A91_D04G104800v1 [Gossypium mustelinum]	[more]
GER39682.1	7.5e-29	97.01	hydrolase [Striga asiatica]	[more]
KAG8369579.1	8.3e-28	92.75	hypothetical protein BUALT_Bualt14G0028000 [Buddleja alternifolia]	[more]
EPS74528.1	1.3e-25	96.83	hypothetical protein M569_00245, partial [Genlisea aurea]	[more]
RYR67196.1	1.7e-25	75.29	hypothetical protein Ahy_A03g013504 [Arachis hypogaea]	[more]

BLAST of CaUC10G181650.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2VCA4	5.8e-43	88.89	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D04G104800v1 P...	[more]
A0A7N0RFX0	4.3e-30	75.26	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A5A7Q4B9	3.6e-29	97.01	Hydrolase OS=Striga asiatica OX=4170 GN=STAS_16306 PE=4 SV=1	[more]
S8EEV4	6.4e-26	96.83	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00245 PE=...	[more]
K3Z2R1	6.4e-26	75.58	Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]

BLAST of CaUC10G181650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC10G181650	CaUC10G181650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC10G181650.1-exon	CaUC10G181650.1-exon-Ciama_Chr10:2692866..2692985	exon
CaUC10G181650.1-exon	CaUC10G181650.1-exon-Ciama_Chr10:2693635..2693829	exon
CaUC10G181650.1-exon	CaUC10G181650.1-exon-Ciama_Chr10:2693892..2693936	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC10G181650.1-cds	CaUC10G181650.1-cds-Ciama_Chr10:2692866..2692985	CDS
CaUC10G181650.1-cds	CaUC10G181650.1-cds-Ciama_Chr10:2693635..2693829	CDS
CaUC10G181650.1-cds	CaUC10G181650.1-cds-Ciama_Chr10:2693892..2693936	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC10G181650.1	CaUC10G181650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding