CaUC09G178320.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G178320.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NAD(P)H dehydrogenase subunit M
Location	Ciama_Chr09: 37565354 .. 37567086 (+)
Sequence length	627
RNA-Seq Expression	CaUC09G178320.1
Synteny	CaUC09G178320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAACAGCAGCAGCTTCATCTTACATGGTGTTTTCTATGGTGGGTTGGAAAAATGGGAAACAAAACACAAAATCCACAGCCAGATTTCCCATCTCAGCTCAAATCAATGAAGCTGCAGAGCAGCTAAAAGTGGGAGAGGAGGAAGAAGAAGAGGCAAAGCCGAAACCGAAACCGCAGCCGTTGCGGCCGGTCGAAGTACAGCAGAATGTAAAGAGCAAAAACATGGGCAGAGAGTATGGAGGGCAATGGCTTAGCAGTGTGACAAGGCATGTTAGAATATATGCAGCTTATATTGACCCTATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTTACTCTCATTTTGGATCCAAGCAATGAGTTCCTTTGGAATCCTCAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGTATTTTTTTCCCTCTTTCTTTAGTGTTTTATGGTTGTTCATATCATGGGTTAGTTTAGTGGTTTTCGAAAACGATTCGGGTTTGTCTTTGAAATTGAACCTAAAGAAATTTTAAATACATTATTATGTACTTTTATTGATTGTTTGTTGATTGTTGTTAGTGTCCATACGAAGGTGTATATATTTCAATTGACAAAGCAATGATTGAAGCCCACAATATTTGGCATTGAAATTTTGTAAAATATTTATATTCTAAGTAGCAATTGTAGGATGAATTCACGAGATCAAATACATAACACATCATCTCTTTTATTATTTGGTCTCATTTGGTATCTATTTTGTTTTTGGTTTTTAAAAATAAGTCTATTTTCTCTCAATTTGTTACAATGGATTTCATTTTCCTCCAAGAATTGAATTCTTAGCCAAATTTAAAAAACAAAAACAAGTTTTTAAAAACTACTTTGTTTGATGTTCAAAACTTAACTTAATTTTTCAAAACATTTGTAAAAAGTAGATAATAAAGTAAAAAATTTAGAAGTGAAAAGGATATCTATAGACTTAATTTTTAAAAACTAAAAACAAAAAACCGAATAATTATCAAAAGCCTTAATGAATCTATGGTGGTTGATGAGTCTAAAGATAATAGATATTTAGGGACAAATTTCCATTAAATTGAGAGGCATAAGATTTTTTATTTTATTTCTTTATTTAAAAAAAATGCTAAATTCAAAAAGTATCCTAATTTTTCCAATTACAATATTAGTTTGACTTTTCTCCACACCTTATTTAGGTCCCAATTCCCATCTAAAAGACCAAGGGCAATATTACATATATATATATAGTTTAGCCCAATAAAATAAAATGAAATAAATAAAATTTAAGCACTAAGAAATTTGATTTATTACTTCATTTGGTACTTTGTAATCTAAATTTTGATTCCTATACTTTAAGAATTGTTCTTTAAGAATTGTTCAATTTTAGTCTTTCAAATGTCTAATTCTAGTTTCAATACTTCGTATAAATCTTAAATTTAGTCCATCAAATTTAATAAGGTACACGGTCTAAAATTGTTTTGGTTGAGTGTGTTTTTTATTTGTGGAAAGCAGGGAGCTCCATTGACAGAATATACACTTCGGCTAATAGGTTCAGACATAGAACACTATATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAATGATCTACCTCAGGATCTACAATCACAATAA

mRNA sequence

ATGGCAACAACAGCAGCAGCTTCATCTTACATGGTGTTTTCTATGGTGGGTTGGAAAAATGGGAAACAAAACACAAAATCCACAGCCAGATTTCCCATCTCAGCTCAAATCAATGAAGCTGCAGAGCAGCTAAAAGTGGGAGAGGAGGAAGAAGAAGAGGCAAAGCCGAAACCGAAACCGCAGCCGTTGCGGCCGGTCGAAGTACAGCAGAATGTAAAGAGCAAAAACATGGGCAGAGAGTATGGAGGGCAATGGCTTAGCAGTGTGACAAGGCATGTTAGAATATATGCAGCTTATATTGACCCTATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTTACTCTCATTTTGGATCCAAGCAATGAGTTCCTTTGGAATCCTCAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCATTGACAGAATATACACTTCGGCTAATAGGTTCAGACATAGAACACTATATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAATGATCTACCTCAGGATCTACAATCACAATAA

Coding sequence (CDS)

ATGGCAACAACAGCAGCAGCTTCATCTTACATGGTGTTTTCTATGGTGGGTTGGAAAAATGGGAAACAAAACACAAAATCCACAGCCAGATTTCCCATCTCAGCTCAAATCAATGAAGCTGCAGAGCAGCTAAAAGTGGGAGAGGAGGAAGAAGAAGAGGCAAAGCCGAAACCGAAACCGCAGCCGTTGCGGCCGGTCGAAGTACAGCAGAATGTAAAGAGCAAAAACATGGGCAGAGAGTATGGAGGGCAATGGCTTAGCAGTGTGACAAGGCATGTTAGAATATATGCAGCTTATATTGACCCTATTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTTACTCTCATTTTGGATCCAAGCAATGAGTTCCTTTGGAATCCTCAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCATTGACAGAATATACACTTCGGCTAATAGGTTCAGACATAGAACACTATATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAATGATCTACCTCAGGATCTACAATCACAATAA

Protein sequence

MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKPQPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDLPQDLQSQ

Homology

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BLAST of CaUC09G178320.1 vs. NCBI nr
Match: XP_008447195.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo] >KAA0041980.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa] >TYK17916.1 NAD(P)H-quinone oxidoreductase subunit M [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 191/209 (91.39%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT AAASSY++FSMVGWKNGKQNTK T RFPISAQ+NEAAEQLKVG++EE++ +  PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQ-DLQSQ 209
           NARVLNFSMGKPRIMFNANDLPQ DLQSQ
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

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BLAST of CaUC09G178320.1 vs. NCBI nr
Match: XP_022940621.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP_023523685.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6607714.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT  AASSYMVFSMVGWKNGKQNT+ +ARFPISAQINEAAEQLKVG EEEEEAKPKP P
Sbjct: 1   MAT--AASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG-EEEEEAKPKPPP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDLQS 208
           NARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 NARVLNFSMGKPRIMFNSNDLPQDLQS 204

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BLAST of CaUC09G178320.1 vs. NCBI nr
Match: XP_004139803.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44204.1 hypothetical protein Csa_016125 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 6.2e-103
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MA  AAASSY++FSMVGWKNG QNTK T RFPISAQINEAAEQLK G++EE++ + KPKP
Sbjct: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTL+LD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQ-DLQSQ 209
           NARVLNFSMGKPRIMFNANDLPQ DLQS+
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 209

[Close]

BLAST of CaUC09G178320.1 vs. NCBI nr
Match: XP_022981611.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima])

HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102
Identity = 188/204 (92.16%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 4   TAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKPQPL 63
           + AASSYMVFSMVGWKNGKQNT+ +ARFPISAQINEAAEQLKVG  EEEEAKPKP   PL
Sbjct: 2   STAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG--EEEEAKPKPPLSPL 61

Query: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSN 123
           RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILDPSN
Sbjct: 62  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121

Query: 124 EFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183
           EFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181

Query: 184 VLNFSMGKPRIMFNANDLPQDLQS 208
           VLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 182 VLNFSMGKPRIMFNSNDLPQDLQS 203

[Close]

BLAST of CaUC09G178320.1 vs. NCBI nr
Match: KAG7037286.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102
Identity = 191/207 (92.27%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT  AASSYMVFSMVGWKNGKQNT+ +ARFPISAQ NEAAEQLKVG EEEEEAKPKP  
Sbjct: 1   MAT--AASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVG-EEEEEAKPKPPR 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVE+Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDLQS 208
           NARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 NARVLNFSMGKPRIMFNSNDLPQDLQS 204

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot
Match: A7NVJ4 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhM PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.4e-79
Identity = 150/209 (71.77%), Postives = 173/209 (82.78%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQIN---EAAEQLKVGEEEEEEAKPK 60
           MA T++ ++   FSM+GW  GK+  +    F ISAQ     E ++Q+   EEE+E+ K +
Sbjct: 1   MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEEQEKMKQQ 60

Query: 61  PKPQPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTL 120
            K +  RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL
Sbjct: 61  GKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTL 120

Query: 121 ILDPSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIK 180
           ILDP+NEF+W  +TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIK
Sbjct: 121 ILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIK 180

Query: 181 YNMNARVLNFSMGKPRIMFNANDLPQDLQ 207
           YNMNARVLNFSMGKPRI+FN + LPQ++Q
Sbjct: 181 YNMNARVLNFSMGKPRILFN-DGLPQNVQ 208

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot
Match: A9PJQ8 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640484 GN=ndhM PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.8e-74
Identity = 145/205 (70.73%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 5   AAASSYMV---FSMVGWKNGKQNTKSTARFPISAQIN-EAAEQLKVGEEEEEEAKPKPKP 64
           AA+SSYM    FSM+GW  G++  K      +S Q   E  E  +V  +EEE+ K   +P
Sbjct: 2   AASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEEKVKQPVQP 61

Query: 65  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 124
              RPVE Q NVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP TCEFDQTQ DKLTLILD
Sbjct: 62  ---RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLILD 121

Query: 125 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 184
           P++EF+W  +TC KVY+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYNM
Sbjct: 122 PTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNM 181

Query: 185 NARVLNFSMGKPRIMFNANDLPQDL 206
           NARVLNFSMGKPRI+FN +   QD+
Sbjct: 182 NARVLNFSMGKPRILFNNDGQLQDV 203

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot
Match: Q2V2S7 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhM PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.3e-66
Identity = 119/154 (77.27%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 48  EEEEEEAKPKPKPQPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEF 107
           +EE+   K K +P PLRPVE Q NVKSK MG ++GGQWLSSVTRHVRIYAAYIDP TCEF
Sbjct: 53  KEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEF 112

Query: 108 DQTQMDKLTLILDPSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYI 167
           DQ+QMDKLTLILDP+ EF+W+ ++CNKVY+YFQELVDHYEGAPLTEYTLRLIGSD+EHYI
Sbjct: 113 DQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYI 172

Query: 168 RKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDL 202
           RKML+DGEI+YNM+ARVLNFSMGKPR+ FN +++
Sbjct: 173 RKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot
Match: A2XVZ1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=ndhM PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-57
Identity = 116/193 (60.10%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 26  KSTARFPISAQINEAAEQLKVGEEEEEEAKPK--PKPQ--------------PLRPVEVQ 85
           + + RFP    +    +Q +V EEEEE A     P PQ              P +P+ VQ
Sbjct: 28  RRSVRFP---PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQ 87

Query: 86  QNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSNEFLWNP 145
              +SKNM REYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+LDP++EF+W  
Sbjct: 88  PLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTD 147

Query: 146 QTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSM 203
           +TC KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYNM +RVLNFSM
Sbjct: 148 ETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSM 207

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot
Match: Q7FB12 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ndhM PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-57
Identity = 116/193 (60.10%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 26  KSTARFPISAQINEAAEQLKVGEEEEEEAKPK--PKPQ--------------PLRPVEVQ 85
           + + RFP    +    +Q +V EEEEE A     P PQ              P +P+ VQ
Sbjct: 28  RRSVRFP---PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQ 87

Query: 86  QNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSNEFLWNP 145
              +SKNM REYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+LDP++EF+W  
Sbjct: 88  PLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTD 147

Query: 146 QTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSM 203
           +TC KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYNM +RVLNFSM
Sbjct: 148 ETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSM 207

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL
Match: A0A5D3D3P2 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002070 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.1e-105
Identity = 191/209 (91.39%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT AAASSY++FSMVGWKNGKQNTK T RFPISAQ+NEAAEQLKVG++EE++ +  PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQ-DLQSQ 209
           NARVLNFSMGKPRIMFNANDLPQ DLQSQ
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL
Match: A0A1S3BGV5 (NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.1e-105
Identity = 191/209 (91.39%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT AAASSY++FSMVGWKNGKQNTK T RFPISAQ+NEAAEQLKVG++EE++ +  PKP
Sbjct: 1   MATAAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQ-DLQSQ 209
           NARVLNFSMGKPRIMFNANDLPQ DLQSQ
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSQ 209

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL
Match: A0A6J1FIZ9 (NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.0e-104
Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MAT  AASSYMVFSMVGWKNGKQNT+ +ARFPISAQINEAAEQLKVG EEEEEAKPKP P
Sbjct: 1   MAT--AASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG-EEEEEAKPKPPP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILD
Sbjct: 61  SPLRPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQDLQS 208
           NARVLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 181 NARVLNFSMGKPRIMFNSNDLPQDLQS 204

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL
Match: A0A0A0K5H1 (NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.0e-103
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MATTAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKP 60
           MA  AAASSY++FSMVGWKNG QNTK T RFPISAQINEAAEQLK G++EE++ + KPKP
Sbjct: 1   MAAAAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEDQEQAKPKP 60

Query: 61  QPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILD 120
            PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTL+LD
Sbjct: 61  SPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLD 120

Query: 121 PSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180
           PSNEFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM
Sbjct: 121 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 180

Query: 181 NARVLNFSMGKPRIMFNANDLPQ-DLQSQ 209
           NARVLNFSMGKPRIMFNANDLPQ DLQS+
Sbjct: 181 NARVLNFSMGKPRIMFNANDLPQDDLQSK 209

[Close]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL
Match: A0A6J1IX15 (NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.3e-102
Identity = 188/204 (92.16%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 4   TAAASSYMVFSMVGWKNGKQNTKSTARFPISAQINEAAEQLKVGEEEEEEAKPKPKPQPL 63
           + AASSYMVFSMVGWKNGKQNT+ +ARFPISAQINEAAEQLKVG  EEEEAKPKP   PL
Sbjct: 2   STAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG--EEEEAKPKPPLSPL 61

Query: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSN 123
           RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILDPSN
Sbjct: 62  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121

Query: 124 EFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183
           EFLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181

Query: 184 VLNFSMGKPRIMFNANDLPQDLQS 208
           VLNFSMGKPRIMFN+NDLPQDLQS
Sbjct: 182 VLNFSMGKPRIMFNSNDLPQDLQS 203

[Close]

BLAST of CaUC09G178320.1 vs. TAIR 10
Match: AT4G37925.1 (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex )

HSP 1 Score: 251.9 bits (642), Expect = 4.4e-67
Identity = 119/154 (77.27%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 48  EEEEEEAKPKPKPQPLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEF 107
           +EE+   K K +P PLRPVE Q NVKSK MG ++GGQWLSSVTRHVRIYAAYIDP TCEF
Sbjct: 53  KEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEF 112

Query: 108 DQTQMDKLTLILDPSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYI 167
           DQ+QMDKLTLILDP+ EF+W+ ++CNKVY+YFQELVDHYEGAPLTEYTLRLIGSD+EHYI
Sbjct: 113 DQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYI 172

Query: 168 RKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDL 202
           RKML+DGEI+YNM+ARVLNFSMGKPR+ FN +++
Sbjct: 173 RKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

The following BLAST results are available for this feature:

BLAST of CaUC09G178320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447195.1	1.5e-104	91.39	PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo...	[more]
XP_022940621.1	1.2e-103	93.24	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP...	[more]
XP_004139803.1	6.2e-103	90.43	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44...	[more]
XP_022981611.1	6.8e-102	92.16	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima]	[more]
KAG7037286.1	6.8e-102	92.27	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of CaUC09G178320.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7NVJ4	6.4e-79	71.77	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=297...	[more]
A9PJQ8	4.8e-74	70.73	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640...	[more]
Q2V2S7	6.3e-66	77.27	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana ...	[more]
A2XVZ1	2.4e-57	60.10	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. i...	[more]
Q7FB12	2.4e-57	60.10	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. j...	[more]

BLAST of CaUC09G178320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3P2	7.1e-105	91.39	NAD(P)H dehydrogenase subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BGV5	7.1e-105	91.39	NAD(P)H dehydrogenase subunit M OS=Cucumis melo OX=3656 GN=LOC103489705 PE=3 SV=...	[more]
A0A6J1FIZ9	6.0e-104	93.24	NAD(P)H dehydrogenase subunit M OS=Cucurbita moschata OX=3662 GN=LOC111446160 PE...	[more]
A0A0A0K5H1	3.0e-103	90.43	NAD(P)H dehydrogenase subunit M OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=3 ...	[more]
A0A6J1IX15	3.3e-102	92.16	NAD(P)H dehydrogenase subunit M OS=Cucurbita maxima OX=3661 GN=LOC111480680 PE=3...	[more]

BLAST of CaUC09G178320.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37925.1	4.4e-67	77.27	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PFAM	PF10664	NdhM	coord: 86..194 e-value: 1.6E-45 score: 153.8
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PANTHER	PTHR36900	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT M, CHLOROPLASTIC	coord: 1..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G178320	CaUC09G178320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G178320.1-exon	CaUC09G178320.1-exon-Ciama_Chr09:37565354..37565794	exon
CaUC09G178320.1-exon	CaUC09G178320.1-exon-Ciama_Chr09:37566901..37567086	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G178320.1-cds	CaUC09G178320.1-cds-Ciama_Chr09:37565354..37565794	CDS
CaUC09G178320.1-cds	CaUC09G178320.1-cds-Ciama_Chr09:37566901..37567086	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G178320.1	CaUC09G178320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding