CaUC09G177550.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G177550.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr09: 36865354 .. 36870035 (-)
Sequence length	669
RNA-Seq Expression	CaUC09G177550.1
Synteny	CaUC09G177550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTGTTTTTGGTGTCAACCATATCATCCTCACTTTGGTCATCTTCTTCTGATGACAGTTGCTTCTGCCTGTCATTTGCTTGACGAAGTTTTTCAAGACTAGCTAATGCGGTTTCCTCGAGTGTCTCCTCCTTTACGTTGCTAAAATCAGTGCCAGGGTTAGTGTCGATGCACGACATAGCTAAACTGCTGGATTTTATATGAGTAACAGACTTGGAGTGTTTATCATTTGTTTTATTGATGTCGGGTATCGTTGAAAGTATAGATGGTTTTGCCTCAACATTAACCCAGCTGCCCTCGAACCAATCTCTAGATACACGAAGATTGGTTCTATGTATGTTCAAGAATAAGCTTTCACCTATTAACAGCAAAGGAGTTGCAAAGAAAGATGACTAAATAAATGTAGATTTAGCTTAAAATCGATAAAGGGAAAGAACCACTTTTATGTTTTTTATTAGAATACCTGGAAAGTAAACATCCACATTATCCTTGCCTGAATCATCTAGGCCAGTAACGACTCCTTCCCACCAGCCATCACTCCACCATGCATCGACTGCAACTCCGATATCAAGGGTGAGCTCGATTTGCTCTTGTGGGGCTGGCCTTGTAATTAGGCGGCCAGGGTGCCTCATGCCGAGTTTATCAGGTAGAGCAACTTTACAAGCAGGGATCCATTCCTGCAAGAGGAAAAACTTGTTAGTTGTTCACTTACTTCAAGTTGAAAATCCTTGTCAAAAACGAAATACAGCAGTAAGGCTACAAGTAAAATGCACTTGAAAAACATTTAAAACAGAGCCGGACTGCAGTTCTACAAAAGCCAAAAAAGTCAACTGAATATGGAAAGCAGTATGTACGCTATACAACCTGATAGTTGTGATCAAACCATCAGACGGTAAATAAGAATAATAGACTTATAGTATGTCTGAGAGTATTTTAAAATGGTTCAAATTATTTTTGTCATTTTTATAATCACTCTAAAACATGCTTTTAATAATTCAAAATCATTTTTAATCGTATAAAATGAACTTTAAAAGTGTAAAATCTAACCTTACATTGATTTTGAACAATAAAAAATATGTTTAAAGTGATTTTAACCATTTCAAGAATTGATCACTCCCTGAAAGCTCTAGTTATGAAATATAACTTTAATCATCAATCTTTTGAAAAGTCCCAACGGCAACATGGAATAGAATAAATCCTCATACACCTGTTGTGGGTTAAATTAACTTTCAAAAGAGTCAAAGTTCAACAAAATGGAAAAGAAGCTAAGAATGTTCCATTGAAACTCTTTAACAGTACCTCAAGGTTGCCATAGCCATCTTCATCTTGCAAATCATCATATTGTACTCTAATCTGTTTCGGTGATGCATGCAAGACCGTACACCTGAACCAGCAGCCTCGAATGCCACTATCTTGACACAGTAACTCTATCTTCTCATTGACCTCATAAGCTGGGTCATTATCGTCCAAAACATGTTTATGTGAAAGAAACCTGCCGCCTAAAAAGCTGTAATTATGCTTCTGGCAAGATTTATGAGTCAACATATGTCGACGACTACCAGACTTTCTAACTTTTGCATTTTCTAACTCAAATGTTCTACTTCCTTTAGCATTTCTGATCCTTTTAACTTTCGGTCTAACACTATTTTCTAGGTCCAAATCTTCTTCGTCTTCCCCAGTCAAGCTATCAAAAATGGGCTCAGATTTTGATAATACATTGAGACTCAAACAAGAGAAGACTGGCTGATCAAAATAGCCACGCAATTTACTCAGGTCAAAGGGTTTTAATCGGTTGCTTTTGAACTGCCTATAGCAAAGATGAACTTTGGAAAGTGCATCATGAGGAAAGGCATTCACACACTTTTCGTAATGTTCACGATTTAAGACTGTTGCGGAACCATCAACACACTCAACACTAATGGCCTGCACATATGGTGTGATGAAAACTTCTCTTGGGTGAGAATTTCGTAATGCGATCACACCTTTCACCTCCTGACTATGATGAAACCACCGCACTTTCACCTTTTTCTGACCCCTCTTATCTTCGTACATGTCTTCCAGGTAAGCAAGATAGTGGTTTTCTCCCTTAGCCATGACATATACAAAGGATTGAACCTGAATAGCATTGACAGAGTAGGAAAGGAAAAATGTCATGATTGGAAAATGATGGTAAAAGCAAATAACGCAAATACCAACTATATAATCTTAACAGACCATCAAACCACAACTTAAGGGTATCATGGAACAAATGCACAGAGAAAATATTGATAGCTCTCTTAGAATAACTCCGATTAGTTTCAAGGTGAAACATCATAGATTTAAACTTGGATAAGTAGCAAATTTCCTGCTACCAAAAACATGCAAGAGTCAAGGCATGTTGAAGCACAAAAGTGGTATCTAAGTGACGTACCAATGTGTACCACCACTTTTTATGAGTAAGAAATTACTGAAGTAATAAAAGAATAACTACTTCAAAAAACCGAATTTCACCTTATCCCATAATCACTCATGTGCACATAGGCCCTACGGTGACTATCTTAGCATAACATGGTAAAGTTAAGTTATACACATTTCTTGCGTTTCTTTACTTCAACATTAAGTTACTAAAAACTGATATATTGTTGCTCACATAAATGGGATAATATACACGAACACCGAGATTTAAACCCATTAATCAACCATGGCGACACCTTATCCTTCAGAGAGTAGATGCTTACCATGATTGAAGTCCCATTCCTGCAAAATGATGGGTAATGCTTGAGTCGTTTACCACAAGTCCATGCAGCACCGGACCATACAATATCTGATGCAAGTCCCTTGGAATTCCTTGATGGGCGAACCTAAGTCAAGATCAAACTGAGGGATAATTCCCCATAATTGTTTGAATATAAATAATGGAAGGGAAGGAATTTACCTTATCATCTGGTATATCAGATTGTGGGATAACTACTCCACTATGTGAAAATTGAAGGGATCCCAGTGTTTGTATTGCATCAAATTTACCAGGCTCTGCATAAAAAAATTTGTCAAGATGCCAATGGCAACAATTCAGGAGAGTAAAATTGCAAAGCATAAAATGCTTTTGAAGGTGACATGTATCTTGATCGACTTAAAGAAACCGAGGAGTGCAGCCTAATTGAAGTGAAGCGCACTTGAATAAATAACTAAAATTTATAAATAATATGAACCTTATAATGCCAAACCCTTGTTGCCAAATTCAACCTAAGAATGGCAAGAAAAAGTAACTACGTTACGTGGCAAATTGAAAGACCATGCCATGGTTGAATTGAGGCAAGTATGGTGCAAGCTCAGCTTGCCTCATCAACATTATATGGTACTTTCTCAACTGTGCTTGACACATATCATGTGAATCACGTCAAATGTGGTTGCCAACTAAAGATTTTATACAAAGAGAATTTGCAAATGCTCTCACACATGTAGACAGAAAAACACAGGTGTTAACTCTAGCAAACTCAGCTTAACACAACGAGAATTCACCATGAATCCAACTATGCAAACGAAATAAAAGATAAGAAAAGAAAACCAAGACAAACCAGAATGATCCCCAGGAGAATGCTGCTTGGATAACATAGAAGTAAGCCAATCCACAACCTCTCTCCTCGATCTCCATTTGAAACCAGCATGGACAGAACTTTCCTTCCCATAAGCTTGCAAAAACTCGTCAGCAACAACATAAAACATGTGTCTGACGCTCCTCTCAGTCCCCACAACTGCAAGAATAGACTCTCCAGCAGAATCCTTTAAAAAATAATGAACTACGCGGTTTCCCCGCTCTTGTGAAACAAATTGCTCCTTCCACTCCACAAAACAGCTACCGTGTCCCATCATTTTGGCCAAATTTTTCATAAAACAATCAACAAGAACCTAAATTCAACTTAAATGCTAATCACATGAGCACGAGTCCATGAGAACGGCCAATGGACGCAGAATTGTTCGTCCCAATAACTACTGTATGAAATCAACCTGTTCATGAATGTTGACCACCAGTCCATCAAGATTACCCAAAATACATAAGACCACAATTTCTCAGCTAAAACTGGTAGATCTCAAGTCAAAAAGGAAAATGAAAGGAAAAACTGGGCAAATGATCCAAGGGAGAATAACCTACAGAATCCTATAACTCAGATGTGTCATGGCAAGATCGGAAGCTAAACTCACAGCCAAAATACCCTAAATTAAAATAATTTTCAAGCATCCAATTCCAACAAGCTTTGAGTTCCTCAAACAAATGACACTCCAAACCACAATAGAAGACCATCAACCCTAAAACCCGCAACAATTTCCCTCAATTATTGAACAACAATTGCAGGAACAGAAGAAGTATGCTCCCCCAAAAATTGGGCAGAACCCACAAACGCAACAGCTTTCTTCAATCCCCCTGCAAAAGAACTGCCTAGAAAACACCAAGGAAGCGGAAAACCCTTTTGACTAATCACGCAGATAGAATCCACAGCAAATTAGATGGGCACAAGGAAGAGATATCCGCAATGAACTTACGCAGGGAGCTCTCCAAGCTTCCAGCAGGAAACCTACAATTTTGAGGCTGAAAAACGGAAGATTTCACAGAATGGGGAAATTGAAAGTTCCCCAACTGTTTAATGGGCATAATGATGAAAATATGAAAAGGGGAATGAGAGATGAGAAGAAAGAGAGCTGA

mRNA sequence

ATGGGAATAACGACTCCTTCCCACCAGCCATCACTCCACCATGCATCGACTGCAACTCCGATATCAAGGGTGAGCTCGATTTGCTCTTGTGGGGCTGGCCTTGTAATTAGGCGGCCAGGGTGCCTCATGCCGAGTTTATCAGGTAGAGCAACTTTACAAGCAGGGATCCATTCCTGCAAGAGGAAAAACTTGTTAGTTGTTCACTTACTTCAAGTTGAAAATCCTTGTCAAAAACGAAATACAGCAGTAAGGCTACAAGTAAGCAAGATAGTGGTTTTCTCCCTTAGCCATGACATATACAAAGGATTGAACCTGAATAGCATTGACAGAGTAGGAAAGGAAAAATGTCATGATTGGAAAATGATGACCATCAAACCACAACTTAAGGGTATCATGGAACAAATGCACAGAGAAAATATTGATAGCTCTCTTAGAATAACTCCGATTAGTTTCAAGAATCCACAGCAAATTAGATGGGCACAAGGAAGAGATATCCGCAATGAACTTACGCAGGGAGCTCTCCAAGCTTCCAGCAGGAAACCTACAATTTTGAGGCTGAAAAACGGAAGATTTCACAGAATGGGGAAATTGAAAGTTCCCCAACTGTTTAATGGGCATAATGATGAAAATATGAAAAGGGGAATGAGAGATGAGAAGAAAGAGAGCTGA

Coding sequence (CDS)

ATGGGAATAACGACTCCTTCCCACCAGCCATCACTCCACCATGCATCGACTGCAACTCCGATATCAAGGGTGAGCTCGATTTGCTCTTGTGGGGCTGGCCTTGTAATTAGGCGGCCAGGGTGCCTCATGCCGAGTTTATCAGGTAGAGCAACTTTACAAGCAGGGATCCATTCCTGCAAGAGGAAAAACTTGTTAGTTGTTCACTTACTTCAAGTTGAAAATCCTTGTCAAAAACGAAATACAGCAGTAAGGCTACAAGTAAGCAAGATAGTGGTTTTCTCCCTTAGCCATGACATATACAAAGGATTGAACCTGAATAGCATTGACAGAGTAGGAAAGGAAAAATGTCATGATTGGAAAATGATGACCATCAAACCACAACTTAAGGGTATCATGGAACAAATGCACAGAGAAAATATTGATAGCTCTCTTAGAATAACTCCGATTAGTTTCAAGAATCCACAGCAAATTAGATGGGCACAAGGAAGAGATATCCGCAATGAACTTACGCAGGGAGCTCTCCAAGCTTCCAGCAGGAAACCTACAATTTTGAGGCTGAAAAACGGAAGATTTCACAGAATGGGGAAATTGAAAGTTCCCCAACTGTTTAATGGGCATAATGATGAAAATATGAAAAGGGGAATGAGAGATGAGAAGAAAGAGAGCTGA

Protein sequence

MGITTPSHQPSLHHASTATPISRVSSICSCGAGLVIRRPGCLMPSLSGRATLQAGIHSCKRKNLLVVHLLQVENPCQKRNTAVRLQVSKIVVFSLSHDIYKGLNLNSIDRVGKEKCHDWKMMTIKPQLKGIMEQMHRENIDSSLRITPISFKNPQQIRWAQGRDIRNELTQGALQASSRKPTILRLKNGRFHRMGKLKVPQLFNGHNDENMKRGMRDEKKES

Homology

[Close]

BLAST of CaUC09G177550.1 vs. NCBI nr
Match: PON94049.1 (hypothetical protein TorRG33x02_100880 [Trema orientale])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-10
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   ITTPSHQPSLHHASTATPISRVSSICS-CGAGLVIRRPGCLMPSLSGRATLQAGIHSCKR 62
           +TTPSHQPSLHHAS A P SR  S+CS  GAG ++ RP CL+PSLSG A+L+ GIHS   
Sbjct: 40  VTTPSHQPSLHHASIAAPTSRERSVCSLVGAGRIVGRPECLIPSLSGNASLKEGIHSYNF 99

Query: 63  KNLL 66
           ++++
Sbjct: 100 RHIV 103

[Close]

BLAST of CaUC09G177550.1 vs. NCBI nr
Match: PON43437.1 (hypothetical protein PanWU01x14_273760 [Parasponia andersonii])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-10
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   ITTPSHQPSLHHASTATPISRVSSICS-CGAGLVIRRPGCLMPSLSGRATLQAGIHSCKR 62
           +TTPSHQPSLHHAS A P SR  S+CS  GAG ++ RP CL+PSLSG A+L+ GIHS   
Sbjct: 40  VTTPSHQPSLHHASIAAPTSRERSVCSLVGAGRIVGRPECLIPSLSGNASLKDGIHSYNF 99

Query: 63  KNLL 66
           ++++
Sbjct: 100 RHIV 103

[Close]

BLAST of CaUC09G177550.1 vs. ExPASy TrEMBL
Match: A0A2P5F8E9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100880 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   ITTPSHQPSLHHASTATPISRVSSICS-CGAGLVIRRPGCLMPSLSGRATLQAGIHSCKR 62
           +TTPSHQPSLHHAS A P SR  S+CS  GAG ++ RP CL+PSLSG A+L+ GIHS   
Sbjct: 40  VTTPSHQPSLHHASIAAPTSRERSVCSLVGAGRIVGRPECLIPSLSGNASLKEGIHSYNF 99

Query: 63  KNLL 66
           ++++
Sbjct: 100 RHIV 103

[Close]

BLAST of CaUC09G177550.1 vs. ExPASy TrEMBL
Match: A0A2P5B3R1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273760 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-11
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 3   ITTPSHQPSLHHASTATPISRVSSICS-CGAGLVIRRPGCLMPSLSGRATLQAGIHSCKR 62
           +TTPSHQPSLHHAS A P SR  S+CS  GAG ++ RP CL+PSLSG A+L+ GIHS   
Sbjct: 40  VTTPSHQPSLHHASIAAPTSRERSVCSLVGAGRIVGRPECLIPSLSGNASLKDGIHSYNF 99

Query: 63  KNLL 66
           ++++
Sbjct: 100 RHIV 103

The following BLAST results are available for this feature:

BLAST of CaUC09G177550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON94049.1	1.3e-10	59.38	hypothetical protein TorRG33x02_100880 [Trema orientale]	[more]
PON43437.1	1.7e-10	59.38	hypothetical protein PanWU01x14_273760 [Parasponia andersonii]	[more]

BLAST of CaUC09G177550.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G177550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5F8E9	6.4e-11	59.38	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100880 PE=4 SV...	[more]
A0A2P5B3R1	8.3e-11	59.38	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273760 PE...	[more]

BLAST of CaUC09G177550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..222

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G177550	CaUC09G177550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177550.1-exon	CaUC09G177550.1-exon-Ciama_Chr09:36865354..36865566	exon
CaUC09G177550.1-exon	CaUC09G177550.1-exon-Ciama_Chr09:36867730..36867819	exon
CaUC09G177550.1-exon	CaUC09G177550.1-exon-Ciama_Chr09:36867863..36867970	exon
CaUC09G177550.1-exon	CaUC09G177550.1-exon-Ciama_Chr09:36869270..36869520	exon
CaUC09G177550.1-exon	CaUC09G177550.1-exon-Ciama_Chr09:36870029..36870035	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177550.1-cds	CaUC09G177550.1-cds-Ciama_Chr09:36865354..36865566	CDS
CaUC09G177550.1-cds	CaUC09G177550.1-cds-Ciama_Chr09:36867730..36867819	CDS
CaUC09G177550.1-cds	CaUC09G177550.1-cds-Ciama_Chr09:36867863..36867970	CDS
CaUC09G177550.1-cds	CaUC09G177550.1-cds-Ciama_Chr09:36869270..36869520	CDS
CaUC09G177550.1-cds	CaUC09G177550.1-cds-Ciama_Chr09:36870029..36870035	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G177550.1	CaUC09G177550.1-protein	polypeptide