CaUC09G162330.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G162330.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 4306955 .. 4307614 (+)
Sequence length660
RNA-Seq ExpressionCaUC09G162330.1
SyntenyCaUC09G162330.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCCGGATTCAATTTCTGGGTAATCGGGATGAATTCGTCCAATTCGGAATTAAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTGCTGTCGTTCATGGCAGCCGGAGTAAAGCAATGCAGACCCGCCGGAGTGACTCGGATCGGAACAGAGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGCCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGATCCGAAACTACAACGCGTCGATCTGGGTCAGAAGATTTGAACACAACAATGTCTGTGCGGAGCTCGTGAAATTCGCCGCCCCAAGTACGAGAGCCATAAGAAGCAACCGCCACAAACTTCCCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCAGGAGGAGTCAGCCGGGTAACCGAGTCGCCAACGTCCAACGGAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGGTTTTCATGAGCAGAGATGAAAAAGAGTCGACCATTTCTGACGATGGGCCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGAGCAATTTGGGGGCGGAATTAGGAGAATCTGA

mRNA sequence

ATGGAAATCCGGATTCAATTTCTGGGTAATCGGGATGAATTCGTCCAATTCGGAATTAAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTGCTGTCGTTCATGGCAGCCGGAGTAAAGCAATGCAGACCCGCCGGAGTGACTCGGATCGGAACAGAGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGCCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGATCCGAAACTACAACGCGTCGATCTGGGTCAGAAGATTTGAACACAACAATGTCTGTGCGGAGCTCGTGAAATTCGCCGCCCCAAGTACGAGAGCCATAAGAAGCAACCGCCACAAACTTCCCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCAGGAGGAGTCAGCCGGGTAACCGAGTCGCCAACGTCCAACGGAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGGTTTTCATGAGCAGAGATGAAAAAGAGTCGACCATTTCTGACGATGGGCCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGAGCAATTTGGGGGCGGAATTAGGAGAATCTGA

Coding sequence (CDS)

ATGGAAATCCGGATTCAATTTCTGGGTAATCGGGATGAATTCGTCCAATTCGGAATTAAAAATCTCGATGTGTCGGAATTTACTGTCGGCTCTTCGGGTAGCGACGACAAGTCGTTTGCTGTCGTTCATGGCAGCCGGAGTAAAGCAATGCAGACCCGCCGGAGTGACTCGGATCGGAACAGAGGAAACAGAGGAATCAAGATTTTCAGGAATCTCCACTCTGAAAATGCTCCACCACCCATCGTCGCCCTTCCGGTGGAAGAAGACAGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGATCCGAAACTACAACGCGTCGATCTGGGTCAGAAGATTTGAACACAACAATGTCTGTGCGGAGCTCGTGAAATTCGCCGCCCCAAGTACGAGAGCCATAAGAAGCAACCGCCACAAACTTCCCACTTTCCGAAACCGCCGGACTGAAATCGACGGACCCAGGAGGAGTCAGCCGGGTAACCGAGTCGCCAACGTCCAACGGAGTGGAATACAGAGCGGACCAGCTCGTGAAGGGCTTTTGGGGGTTTTCATGAGCAGAGATGAAAAAGAGTCGACCATTTCTGACGATGGGCCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGAGCAATTTGGGGGCGGAATTAGGAGAATCTGA

Protein sequence

MEIRIQFLGNRDEFVQFGIKNLDVSEFTVGSSGSDDKSFAVVHGSRSKAMQTRRSDSDRNRGNRGIKIFRNLHSENAPPPIVALPVEEDSGVAGPRRPSAPIRNYNASIWVRRFEHNNVCAELVKFAAPSTRAIRSNRHKLPTFRNRRTEIDGPRRSQPGNRVANVQRSGIQSGPAREGLLGVFMSRDEKESTISDDGPVVKAASGGGREQFGGGIRRI
Homology
[Close]
BLAST of CaUC09G162330.1 vs. NCBI nr
Match: CBI37008.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-18
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 0 

Query: 38  SFAVVHGSRSKAMQTRRSDSDRNRGN-RGIKIFRNLHSENAPPPIVALPVEEDSGVAGPR 97
           S   +HG RS+ + + R    R+ GN R +K  R +H+ENAPP I++LPV+ + G+AGP 
Sbjct: 198 SLTTLHGRRSETVNSWRGYPARSLGNTRRLKTLRQIHAENAPPSIISLPVKVEVGIAGPG 257

Query: 98  RPSAPIRNYNASIWVRRF-EHNNVCAELVKFAAPSTRAIRSNRHKLPTFRNRRTEIDGPR 157
            P+  +  YN +++  RF E+NN+  +L+KF AP TR I  N ++L   RNR T ID   
Sbjct: 258 GPTTTLA-YNNTLFRLRFPENNNISVQLMKFTAPRTRPIGCNSYELSGPRNRWTVIDNSV 317

Query: 158 RSQPGNRVANVQRSGIQSGPAREGLL-------GVFMSRDEKESTI 195
           RSQ  N +  ++ SG+ S PA EGLL       G+ + R E E+ +
Sbjct: 318 RSQLHNCLV-IKPSGVNSRPADEGLLWPCSGLIGIEIERKEVEAVV 361

[Close]
BLAST of CaUC09G162330.1 vs. ExPASy TrEMBL
Match: A0A5K0Z247 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9927 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 56/190 (29.47%), Postives = 79/190 (41.58%), Query Frame = 0 

Query: 7   FLGNRDEFVQFGIKNLDVSEFTVGSSGSDDKSFAVVHGSRSKAMQTRRSDSDRNRGNRGI 66
           FLG+ DE     I++LDV+   VG         +     R + +   RSDS     + G 
Sbjct: 37  FLGDLDELPTDQIEDLDVAVRRVGPPSRHHDELSGSRRGRGERVHAGRSDS----FHLGF 96

Query: 67  KIFRNLHSENAPPPIVALPVEEDSGVAGPRRPSAPIRNYNASIWVRRFEHNNVCAELVKF 126
                   E+APPP+V LP+E+   + G RRP+A +     +  + R E   +  ELV  
Sbjct: 97  AAMPENRPEDAPPPVVGLPMEKYGRLVGERRPTAVVDELEPAGPIGRVEEIYIGGELVNL 156

Query: 127 AAPSTRAIRSNRHKLPTFRNRRTEIDGPRRSQPGNRVANVQRSGIQSGPAREGLLGVFMS 186
             P + A R +R  L   RN R EI      QP   +   Q   +   P   GL      
Sbjct: 157 PRPPSLAGRRHRRPLAGRRNGRAEIRHQVGRQPSG-LEGFQVRRVHGRPTLPGLPSRPFR 216

Query: 187 RDEKESTISD 197
           RD  +   SD
Sbjct: 217 RDVNQPVSSD 221

The following BLAST results are available for this feature:
BLAST of CaUC09G162330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
CBI37008.33.8e-1840.36unnamed protein product, partial [Vitis vinifera][more]
BLAST of CaUC09G162330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G162330.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5K0Z2472.1e-0629.47Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9927 PE=4 SV=... [more]
BLAST of CaUC09G162330.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..178

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC09G162330CaUC09G162330gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC09G162330.1-exonCaUC09G162330.1-exon-Ciama_Chr09:4306955..4307614exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC09G162330.1-cdsCaUC09G162330.1-cds-Ciama_Chr09:4306955..4307614CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC09G162330.1CaUC09G162330.1-proteinpolypeptide