CaUC07G135910.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G135910.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr07: 26066605 .. 26067370 (-)
Sequence length	309
RNA-Seq Expression	CaUC07G135910.1
Synteny	CaUC07G135910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACTTCCCTTCTTCCTCCTCCTCACCGCCTTTGCTTCTTTTAGCACTCAACCCAATCATACTCAAATCCTTCAAACCCGAAACTCCATTCCATTGCATTACATGTCTTTCCCCCATTTTCCAATGCCGAAATCACTTCCTCTTCTTCGATCCGACCCCTCATCGTCGTTGCTCAAACCATTCTCGCCTCCTTCTCCCGCATTTTAGTCACTCACTCTGCTCTCTCGCTTTCTTTTTCTGTGATTTCAGAGGTAACCTTACTTCTCACCTCTTTATGATTTCATCTCTCATTCTCTGGATCATTCGCATTTGATTGCTCATTTCCTCCGATTTTTGTTTTATTGTGCGTATCAGTTTTTTTTTTTTTGGGATACATAGTTTATGTTTTAGGTAATTCGTTGTTGAAACGATCAATTGTCTTTGCATCGATCGGATTGATTGTTTGCTTTATATTTAATCAACGGTGGTTTGTATAGAAATGTTTTAATCTACGGCGAAGAAATTAAGTTTAGAAGTATTTGAAATTTTTGAATAATCTAATAGTTATATTGATAGATCCTCTAGATTCATAAGGTTTTTATCCTCTCTGCTGATTATTACTGTTATTTAGACATTTACGTTCCTATTGGGTCTTAAGATTGACATGATGACATCCTAATGAAACTCCGGATCTCTTATCGTTTCTGCTTTTGCTGTTTTGGTCTCCAGGGCGTACTAGTCACCGAGTTCCTAATTGGCAATTATTCTACATCTGGTTTTGA

mRNA sequence

ATGAATCACTTCCCTTCTTCCTCCTCCTCACCGCCTTTGCTTCTTTTAGCACTCAACCCAATCATACTCAAATCCTTCAAACCCGAAACTCCATTCCATTGCATTACATGTCTTTCCCCCATTTTCCAATGCCGAAATCACTTCCTCTTCTTCGATCCGACCCCTCATCGTCGTTGCTCAAACCATTCTCGCCTCCTTCTCCCGCATTTTAGTCACTCACTCTGCTCTCTCGCTTTCTTTTTCTGTGATTTCAGAGGGCGTACTAGTCACCGAGTTCCTAATTGGCAATTATTCTACATCTGGTTTTGA

Coding sequence (CDS)

ATGAATCACTTCCCTTCTTCCTCCTCCTCACCGCCTTTGCTTCTTTTAGCACTCAACCCAATCATACTCAAATCCTTCAAACCCGAAACTCCATTCCATTGCATTACATGTCTTTCCCCCATTTTCCAATGCCGAAATCACTTCCTCTTCTTCGATCCGACCCCTCATCGTCGTTGCTCAAACCATTCTCGCCTCCTTCTCCCGCATTTTAGTCACTCACTCTGCTCTCTCGCTTTCTTTTTCTGTGATTTCAGAGGGCGTACTAGTCACCGAGTTCCTAATTGGCAATTATTCTACATCTGGTTTTGA

Protein sequence

MNHFPSSSSSPPLLLLALNPIILKSFKPETPFHCITCLSPIFQCRNHFLFFDPTPHRRCSNHSRLLLPHFSHSLCSLAFFFCDFRGRTSHRVPNWQLFYIWF

Homology

[Close]

BLAST of CaUC07G135910.1 vs. NCBI nr
Match: KAA0050792.1 (putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >TYK08554.1 putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-07
Identity = 44/91 (48.35%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 1   MNHFPSSSSSPPLLLLALNPIILKSFKPETPFHCITC-LSP--IFQCRNHFLFFDPTPHR 60
           MNHFP     P        P  L  F      +CITC LSP  IFQC NHFL FD  PHR
Sbjct: 28  MNHFPLLPPHPFASSFTTQPKPLLKFL--KLHYCITCHLSPFLIFQCWNHFLLFDSIPHR 87

Query: 61  RCSNHSRLLLPHFSHSLCSLAFFFCDF-RGR 88
             S     +  HFS  LC LA FFC F RGR
Sbjct: 88  PSSIRFCFIRLHFSRFLCLLALFFCGFQRGR 116

[Close]

BLAST of CaUC07G135910.1 vs. ExPASy TrEMBL
Match: A0A0A0L8G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 45/90 (50.00%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 27  KPETPFHCITCLS---PIFQCRNHFLFFDPTPHRRCSNHSRLLLPHFSHSLCSLAFFFCD 86
           KP    HCITC     PIFQCRNH L F   PH   S     +   FSHSLC LA FFCD
Sbjct: 48  KPLLKLHCITCHPSPFPIFQCRNHSLLFHSIPHPPSSIPFCFIRLPFSHSLCLLALFFCD 107

Query: 87  FR-----------GRTSHRVPNWQLFYIWF 103
           F+           G TS+  PN QLFYIWF
Sbjct: 108 FQRSSKFMSFFSPGLTSYPFPNRQLFYIWF 137

[Close]

BLAST of CaUC07G135910.1 vs. ExPASy TrEMBL
Match: A0A5D3CBE6 (Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00960 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-07
Identity = 44/91 (48.35%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 1   MNHFPSSSSSPPLLLLALNPIILKSFKPETPFHCITC-LSP--IFQCRNHFLFFDPTPHR 60
           MNHFP     P        P  L  F      +CITC LSP  IFQC NHFL FD  PHR
Sbjct: 28  MNHFPLLPPHPFASSFTTQPKPLLKFL--KLHYCITCHLSPFLIFQCWNHFLLFDSIPHR 87

Query: 61  RCSNHSRLLLPHFSHSLCSLAFFFCDF-RGR 88
             S     +  HFS  LC LA FFC F RGR
Sbjct: 88  PSSIRFCFIRLHFSRFLCLLALFFCGFQRGR 116

The following BLAST results are available for this feature:

BLAST of CaUC07G135910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050792.1	9.0e-07	48.35	putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >...	[more]

BLAST of CaUC07G135910.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC07G135910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8G0	1.0e-11	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1	[more]
A0A5D3CBE6	4.4e-07	48.35	Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa ...	[more]

BLAST of CaUC07G135910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC07G135910	CaUC07G135910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC07G135910.1-exon	CaUC07G135910.1-exon-Ciama_Chr07:26066605..26066657	exon
CaUC07G135910.1-exon	CaUC07G135910.1-exon-Ciama_Chr07:26067115..26067370	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC07G135910.1-cds	CaUC07G135910.1-cds-Ciama_Chr07:26066605..26066657	CDS
CaUC07G135910.1-cds	CaUC07G135910.1-cds-Ciama_Chr07:26067115..26067370	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC07G135910.1	CaUC07G135910.1-protein	polypeptide