CaUC06G118820.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118820.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReplication termination factor 2
LocationCiama_Chr06: 23628580 .. 23634523 (-)
Sequence length576
RNA-Seq ExpressionCaUC06G118820.1
SyntenyCaUC06G118820.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTGTTTTTTAGGAGTGGTCTGAAAAAGTGGAAAATGTTATTCATTTCAGCCCTATTGTAATGTAATGTCATTTATTTACTATGGATCTTTTCATTTTGTTAATTATGAACTCTTTTCTTTCTTTTTTGGTATTTACTAATTTTGTATGGTCATTTATGTTTATCATATTTCAATGCCAATTATGGATCCTAATCCTTCTAATTCAAGGGCAATTATATTTACAACCAAACAATTGTTCGCAATCAATATGAGATACTTAGTTCACTGTAGTTTTAGGATGTCGTAATCGCAAGTAGTTGATTGTAGTATAATGTTAGACCCACGGATCGTACCTTACTTACAACAAGCTGATTTTTTCGGGGTTGCACAAATTGGGTTTATTCAACTGGATTGACATCTCATTATTGCTTTAGTGGAGTAATGAAAACCTGAAACCCACACATTTCACATGTCTAGTGGGGGAATGTACCATTACATCGCAAGACATTGGCCTCCAATTTGGATTAGCAGTTGATGGAGAACTTGTGACTGGATCGTTGGTGTACGATTGGAAACATGTTTGTGAAGATTTTTTGGGTGTTCGACCCTAGAATTGAAAGGCTCTAGGTTGAGTATCCCTTGGTTGTCATCACAATTTACAGAGCTATATTTTGATACTGACGAGATTACCATACAAAGTATGCATGGGCATATATCATGCAGTTCATTGGAGGATTTTTGTTCGCTGACAAGTCGAACACATTAGTTCATCTAATGTTACTTTCTTTATTGGGAAGCTTTGAGATTGTTGGTAGATTCATGGGTTAGTGCATGTCTTGCATGACTGTATAGGAAATTATGTCGGGCTAGTACTGCAACCGCTTTAGAGATAGTAGGCCCACTAATATTATTGTAAGTATGGGCTTATGATCGGTTTTACACCATAACACCACCAGTTGAGTTATCGTCTCCCGATCATTTTATTGGACGTTTGCTTAGTGTCAGGTATTACATTCGTTACATCTTCATTTCATAATAAATTTATATATAATAAAATTTTTAATTATATTACATGCATGTGTAGATGGAGCAATATTTTAGTAGCATCTAAGCATTCTGCAAATATGTTACTAGTATACAAACTACCATTTGGTCGACTAATGCACACTCAAGTAAGAACATATATCTTTCATTAAAAAATAAATAGTACATATTATTGCACAATTGAGTTCTACTTATTAACTTTTTTAATTTTAGATCAATTGGATGTCGTACATAGAGAAGATAATGGCGTCATTATCTGATTATTGTTATAATGATCAAGACATTTGGTTGACGGTGAGTCCTCTAATATGCTTTCATATCGTAGAGTGGCATTACCCAAACCGAGTGTTAAGACAATTTGGAATAGGACAAACGATGCCACTAGTTTGTTATACAAACTGCAACTTGCACCAAATTGATTTAAGGGGTAAGCATGACCAAGATTGGTGACGAATTCATGCAAACTATTTATCCTTGTGGCGGGCACATTGTGATCATTGTGTAAGAGGAGATGTAGTAGATGGACCAATTGTATTAGAGGACTATTTATCTTGGTACGATTCAATTACAAGACGATATATCACACCTGACAACGCTTATTATTATTGCATGATAAGAATTTTATTATTTATTTCATTTAATTTTGTTGTTTGCATATTATTTTACATTGATTTTTTTTCTTCATACAAAATAATTTTGTTCAAGATGTACAACAATATTTAGTGCAACATAATTTACCAGAGCTAAGTTCAATGTGTGATCATGTAAGGGTAGAAGATATCGTTCAACAGACACATAGACTTAATGTTGCCAATACTGATAGAAGACGTGTTTGTCTTTGACGTCAACGACAACAAATCAAGAATATTCCAAAGCAACACATTAACCCAGAACCTCATGTACCTACTAATTTGACTCAAGCTTCTTTTGAAGATTTCCTAGGAGTTCAAGGAGACATTGCATCGAGTTCTAGTCATCAAAATGAATATTATGCACCTGATGCATTTCTGACTGTTGTCACCCATCAAGACATTGATGATGTAATTCATCATCAACAAACACTTTGAGGTTCCTATATCTCATCGTGGCTGGGGTGAGAAAAGATGACTACCGTGTGACACATGAGTTTCCATTGACTTGTAATTGTAATACTCACTTTATATGTAGTTTTATTTAGGAATATTTAAATATAATTTAATTCATTATTCGCCTTATTATGTGTCAAACTTTATGCTCTTAATGTTTGAATTGAAAAAAATAAATTTCAAAATTTAAGTTGCAAAAAAAAAAAAAAAAGTAGTTCGACTTTAAACGTGGACTAGCTCCACAACTTTTGTCCATCTGACATATGACATGGACGATTGGTCAACTAGTTGATTGGGAATAAGAAAAACGTGAACTGAGTCCACGACTATTTTAGAAAGTCGTAGACCCCCTTTTTCACCTAAGTTTCCCTATGGTTGATAAGCACTTGAAAAGTGCTTTATATTCTCTCAAATTAAGGGAGTTTTATATTAGATTTCACTTGTTTGCTAGTGATTTTCAGGTTAAAACGAGGAAAATTAGAAGAAACGACTAAGATCAAAACCGAGCAAAAATACGGCGAAAAAGAGCTGAAAAACGCATCATTGTTGAACGCAGGGCAGCGCCGCGGCGCTAAGACAGCACTGCCGCGGCGCTGAAGCAGAAAAGCATCAGCATGGACGCAGAGTAGCATCGCGGCGCCGAGAAGGCGCTGCCTCGACGCATCCTTGGTGAACGCAAGACAGCGTCGCGGCGCTGAGACGGCGCTGCCGCGACGCTAAAACCCGAGAGCAACTTATTTTTGGTCGCAACCCTAGCGCCGCGGCGCTATGCGACAGTGCCGCGGCGCCAGCGTTAATTAAACGAAAAGTTTGTATTTTAGGTTAAGTTTTTGGCGGCCAAACTCTATAAATTGAGGGGTTTTCAGCAGTCCAAGGGGGAGAAAGAAGATCAAGAAGATCAAGAAAGTTGCAGAACAAGAGAACGATCTGAAAAGGTGAGAATTAAGCTAGAGTTCCAAGAGTGAGTTAGCCGCAAGGAAGAGGAAAAGAGTTCGAGATAGTTTTGGTGCCCTTCGAAGTCCGACGCGAGAGCCAAGAAGTTCGTGACGGGGCTGCCTCAATCAAGAACCTCTTTTCAGTAGAGTTTCCCTATTCTTTACACTCTTTCTTTGATTCTTTTTTATCAATATGTTGCTTTACGCTATGAGTGGCTAAACTCTTTGGTTTTAAGGTTTTTGATGAATTGTTTGCAAACTCATGATAATTTTGTAAACTCATGGTTTTGTTCAAATAAATATGCTTTTCATTGTTAGTGTGTTTAATTCTTGAAGATTGGCCACCTTCACATGTTAGATTAGATGTATGATCGAGAGATTATATATTTAATTTGATCTATAACAATGAATCGTTGTTAATCTATCACGAGAGTAGTTAGGTTTACAATGAAAGTTGCTAAAGACTAGTTTTAATTCCATGTAATTTTGTATTGGTTTTAAGAGATTAATTATCAATCAAGTTGCATGAGAAAGAGTTGTCTTTGAGAGAAGATAACTTGGAATAAAGTTTCTAGACTTAGGCATAAGAATTAAGTCCATGAAATCTATAATTTTGCATGATGAAACAAACAAGGAATTGAAACCCTAGAACTCTCTTTGACTCTTGCAATTCTCCCTTTGATATTTTCTTGCTTGATTTTTCTTTTTCCCAAAAACAAAAGTTGAATTCCAATCCTCAAATAAAATTGATTCAATTCTAGAATAGCTAAATAACTTAAACCTTCCCAATTGGATCTCTAGTGGAAACGATACTCGGACTTAACCATTTTATATTATAACTTGACCCGTACACTTGCGGTTAACACACAAAAGTGTCACATCAACGGTCCTAAATGTGGCATATTTTTCCACTACCATATTATTTTCAGAATATGTTTCTAAATAACCCTATTTTTATCATTTTTTTTTCAAAAACTACATTATTTTTTAAATTAAATGAAAACCTAACAATTAAACTCTTCTTAAAAGGAAAAAGAAAAAGATGTTACTATTAATAAAAAAAAATTAAAAAAAAACTTAGAATGCTACAATTAAACTCTTCTACATTCTCTTTTGCATATCTGATTCTCTTATGAACCTCTCCTACTGCTTTGGCTATGGCTATTGCTAATCGCTGATACACGTTTTACTGTTCTTCTTTAATTTCCCTCACTTTTGAAACCCTAGCCACAAAATTTCGTCATCCTCCTCTTCGTAATGCATCAGGAAAATCAACACCATCTTCAGATCTTCCTTCATTCTCCCGACCTCCAAATTCAATCCCAAATAGTAAACCTTCCATAAACTTTGCCCCAAACCCTAGAGGACCTGAAATTCTCTCTTCTCCCCGAAACACTCGCTTCACGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCCTCCTCGATTCCACCACGATTCCCAGTTCTCTAATTCCCCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGTGGCGATGGTGGTGCAACAGGGGCTGAATTTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACTGCTGTTACTCTGTCAAGCTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGACCTTAGATGAAGATTATGTAGAGTGAAATTTTTTCGTATCGGTTAAAGTTAGAAGCACATTTTCTTAGTTGTGTGTATATATATCATTTGTGTCTGCTGAATATTATGTGCTCAGATGTCCCACAAGTTTTCTTATCTGATGGTTTTGGGCCTTCTAGCCATTTGGCCAAACTTCTTGTACATATTCATATTATTATTTTAAAATTTTTTGCCTTTTCATGCTTCTGTGACTTATCCTCGTTCCTACTGTCTGATAAATCAGATTCATAACACAACTTGATTTTGTTCTTTTTTGAGTTATGAAACTTTACTGGAACTGTAGTCTGGTTCAATCGAGCAAGCCAAATATGTAAAATACTTTGGTTTAGAAGGTAAACCTTTCTTTGGAGGATAGTAGCAAGAGGATCAATATTTGCCAAGTGTTCAAGTTGATTGACAATTATTTTCATGTCGATCCTGTTGAAGCCCTTTGGTCCTGTTGACTTAGTCAGGTTCGAAAGTCGTGTAAGTCAGGAGAGGTGGTCTCCCCCCCTTCTTGAGAAGTTGCTAGAAGCTCACTGTAGATGCCTCTTGGTGCAGCAACAAGAAGATGAACGGTTTAGGGTGAGTTGTTCGTGACTCTCAGGGCTTTCCTCTCCACGTCGGTTTCAAGAATTGTGTCAACCACTGCCTATGGAGTCTAATTCGTTAGATATTATTCATGACTTTAATGAGTTATTTGCCAATCTGTCAGAATATTGGTGTGGTTTCTTTCATGCAATTTTGTTGTCCACTCTCTTGAGCGTGATGGTGTAAGTTTTATGGATCCCTAGGCTACTAACTAAGGAGGAGGGTTGTGTTGCTTGTTGGGAGTTAGTTGGGTGTTCACTATTCTTAATGAGAACTTTTGTTGTGTAGTTAGTTTCTTGATTTAATAAAGTTCTTTTTTTTTTTTTTTTAAAAAAATGTTGTTAGAACCCATGTCATTTTATATATTAGGTGATCGAGGATAAAATCATAAAATTAATATGCATAATGTCCTTATGATCATGCATTCCAAGGAAGATCAAGAGCAACAAGATGATCAATGTGATACAAGTTCCACCAAATAGTGGAGCTACCAAGAAGGAAGGATCCATGAAAGCTTCTTAA

mRNA sequence

ATGGCCACAAAATTTCGTCATCCTCCTCTTCGTAATGCATCAGGAAAATCAACACCATCTTCAGATCTTCCTTCATTCTCCCGACCTCCAAATTCAATCCCAAATAGTAAACCTTCCATAAACTTTGCCCCAAACCCTAGAGGACCTGAAATTCTCTCTTCTCCCCGAAACACTCGCTTCACGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCCTCCTCGATTCCACCACGATTCCCAGTTCTCTAATTCCCCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGTGGCGATGGTGGTGCAACAGGGGCTGAATTTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACTGCTGTTACTCTGTCAAGCTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGAAGATCAAGAGCAACAAGATGATCAATGTGATACAAGTTCCACCAAATAGTGGAGCTACCAAGAAGGAAGGATCCATGAAAGCTTCTTAA

Coding sequence (CDS)

ATGGCCACAAAATTTCGTCATCCTCCTCTTCGTAATGCATCAGGAAAATCAACACCATCTTCAGATCTTCCTTCATTCTCCCGACCTCCAAATTCAATCCCAAATAGTAAACCTTCCATAAACTTTGCCCCAAACCCTAGAGGACCTGAAATTCTCTCTTCTCCCCGAAACACTCGCTTCACGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCCTCCTCGATTCCACCACGATTCCCAGTTCTCTAATTCCCCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGTGGCGATGGTGGTGCAACAGGGGCTGAATTTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACTGCTGTTACTCTGTCAAGCTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGAAGATCAAGAGCAACAAGATGATCAATGTGATACAAGTTCCACCAAATAGTGGAGCTACCAAGAAGGAAGGATCCATGAAAGCTTCTTAA

Protein sequence

MATKFRHPPLRNASGKSTPSSDLPSFSRPPNSIPNSKPSINFAPNPRGPEILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMFTVNNCCYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMKIKSNKMINVIQVPPNSGATKKEGSMKAS
Homology
[Close]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match: XP_023516862.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 7.3e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 64  IIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           I+   + TLNGKPLLDSTTIPSSLIPPLSTLILRTR LG GGDGGATGAE RDCYLNM+
Sbjct: 47  IVSSFYFTLNGKPLLDSTTIPSSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match: XP_022922055.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-17
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 0 

Query: 40  INFAPNPRGPEILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTR 99
           +N A N    + L   +++     I+   + TLNGKPLLDSTTIP SLIPPLSTLILRTR
Sbjct: 25  VNLARN--SVQTLEDLKSSLVPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRTR 84

Query: 100 FLGSGGDGGATGAEFRDCYLNMF 123
            LG GGDGGATGAE RDCYLNM+
Sbjct: 85  VLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match: KAG6589783.1 (Replication termination factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-17
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 40  INFAPNPRGPEILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTR 99
           +N A N    + L   +++     I+   + TLNGKPLLDSTTIP SLIPPLSTLILR R
Sbjct: 25  VNLARN--SVQTLEDLKSSLVPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRAR 84

Query: 100 FLGSGGDGGATGAEFRDCYLNMF 123
            LG GGDGGATGAE RDCYLNM+
Sbjct: 85  VLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match: KAG7023456.1 (Protein RTF2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-17
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 40  INFAPNPRGPEILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTR 99
           +N A N    + L   +++     I+   + TLNGKPLLDSTTIP SLIPPLSTLILR R
Sbjct: 25  VNLARN--SVQTLEDLKSSLVPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRAR 84

Query: 100 FLGSGGDGGATGAEFRDCYLNMF 123
            LG GGDGGATGAE RDCYLNM+
Sbjct: 85  VLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match: XP_038879920.1 (replication termination factor 2 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-16
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 69  HLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           + TLNGKPL DSTTIPSSL+PPLSTLILRTR LG GGDGGATGAE RDCYLNM+
Sbjct: 56  YFTLNGKPLPDSTTIPSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 109

[Close]
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match: A0A6J1E7I8 (Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430120 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = 0 

Query: 40  INFAPNPRGPEILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTR 99
           +N A N    + L   +++     I+   + TLNGKPLLDSTTIP SLIPPLSTLILRTR
Sbjct: 25  VNLARN--SVQTLEDLKSSLVPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRTR 84

Query: 100 FLGSGGDGGATGAEFRDCYLNMF 123
            LG GGDGGATGAE RDCYLNM+
Sbjct: 85  VLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match: A0A6J1KUM3 (Replication termination factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111498815 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 69  HLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           + TLNGKPLLDS TI SSL+PPLSTLILRTR LG GGDGGATGAE RDCYL M+
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMY 109

[Close]
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match: A0A6J1F067 (Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 69  HLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           + TLNGKPLLDS TI SSL+PPLSTLILRTR LG GGDGGATGAE RDCYL M+
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMY 109

[Close]
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match: A0A5A7SWS4 (Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00470 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 68  LHLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           L+ TLNGKPLLDSTTI  SLIPPLSTLILRTR LG GGDGGATGAE RDCYLNM+
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match: A0A1S3B9F3 (Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 68  LHLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGATGAEFRDCYLNMF 123
           L+ TLNGKPLLDSTTI  SLIPPLSTLILRTR LG GGDGGATGAE RDCYLNM+
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of CaUC06G118820.1 vs. TAIR 10
Match: AT5G58020.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 51  ILSSPRNTRFTGCIIFLLHLTLNGKPLLDSTTIPSSLIPPLSTLILRTRFLGSGGDGGAT 110
           +L S +   F+ C I     TL+GK L  ST I  S +P +S L L  R  G GGDGGAT
Sbjct: 37  LLESSQRISFSACSI-----TLDGKLLNGSTRIQVSKLPSVSMLTLFPRLRGGGGDGGAT 96

Query: 111 GAEFRDCYLNMF 123
           GAE RDCYLNM+
Sbjct: 97  GAESRDCYLNMY 103

The following BLAST results are available for this feature:
BLAST of CaUC06G118820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516862.17.3e-1883.05protein RTF2 homolog [Cucurbita pepo subsp. pepo][more]
XP_022922055.11.6e-1762.65protein RTF2 homolog [Cucurbita moschata][more]
KAG6589783.16.2e-1761.45Replication termination factor 2, partial [Cucurbita argyrosperma subsp. sororia... [more]
KAG7023456.16.2e-1761.45Protein RTF2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038879920.11.1e-1685.19replication termination factor 2 [Benincasa hispida][more]
BLAST of CaUC06G118820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G118820.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E7I87.9e-1862.65Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430120 P... [more]
A0A6J1KUM31.3e-1581.48Replication termination factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111498815 PE=... [more]
A0A6J1F0671.3e-1581.48Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 P... [more]
A0A5A7SWS41.6e-1585.45Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3B9F31.6e-1585.45Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV... [more]
BLAST of CaUC06G118820.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58020.13.2e-1151.39unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 ... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..42
NoneNo IPR availablePANTHERPTHR12775:SF1BNACNNG39770D PROTEINcoord: 70..123
IPR006735Replication termination factor 2PANTHERPTHR12775PROTEIN C20ORF43 HOMOLOGcoord: 70..123

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC06G118820CaUC06G118820gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G118820.1-exonCaUC06G118820.1-exon-Ciama_Chr06:23628580..23628670exon
CaUC06G118820.1-exonCaUC06G118820.1-exon-Ciama_Chr06:23629766..23630246exon
CaUC06G118820.1-exonCaUC06G118820.1-exon-Ciama_Chr06:23634520..23634523exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G118820.1-cdsCaUC06G118820.1-cds-Ciama_Chr06:23628580..23628670CDS
CaUC06G118820.1-cdsCaUC06G118820.1-cds-Ciama_Chr06:23629766..23630246CDS
CaUC06G118820.1-cdsCaUC06G118820.1-cds-Ciama_Chr06:23634520..23634523CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC06G118820.1CaUC06G118820.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902979 mitotic DNA replication termination
cellular_component GO:0005634 nucleus