CaUC06G113310.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G113310.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 8150884 .. 8153740 (+)
Sequence length387
RNA-Seq ExpressionCaUC06G113310.1
SyntenyCaUC06G113310.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCGTAAGTGAACTCTGACAATAAAAGGGAAAAAAAAGGTAGAAAAATAGAAAGAAAGTGCATTGGAGATGAGTTTAGATTGAAATACAAACCATGCTATACTTACAGTTTCAGTTTTCTGAAGGGAAAGGGAAAGAAAAAAAAGGAAAGAAAAGAAATAATGAAACAAAAGAAATTTATTTTTAGGACCTGTTTGATTTTATGGCTGATTATATTAGTTACTACATGAAATCAAAGATCAGCAGGTCGTTCAAAGTTCATCTTAATCCATATTTGATTAACTGGCTTCTGGCTCTATGGATAATTGTATAAACATCATATAGAAAGAAATTTTCTTATTTTAAATTGGAACTAAAGTTACTTTATTTCTCTTAAAAAATGGTTTCTTATTTGAAGCATTTTGTTGTGTTTGGTTGTTTATTATGTGTCATATTGGCTTTCTGCTTTGTTTTGATTAGAACCAAAAGATGAATATGGTTTTCTTATTTTAATTGGAACTGAAGGTTTTCATCTTTGGTTTCAAAGTAAATTAAAATGTTCCTTCCTTCCTTTTTTTNNNNNNNNGTAAGAAAACGTCAAACCATTCAATTCAATCAACCTCAATCCCCACAATCTCCACATATTTTACTTTGAGGTTCAACAATCCTTGCTACCTTCCTAACATCTTTCCCTAAGTTTCATGATTGTGATGTGCTTTATAACATACTTTTTCTGGTTTAAAGTTGAAATTTACCAAAACAATAATTTACTTCATTTTATGTACAAGTAATTTTTTTTAAAACCAATAGTTGCCCGCAATTATTTTGAAAGCTACAACAACCCCAAACTTGTTGGAAATGCAACCAAAGTTCCACATTGGGTTAAATAAAGAGGTGATCATGGGTATATAAGTGAAGACAACTATCTCCATTGGTATAAGACCATTTAGGATGGAACCAAAAACAGAACCATGAGGGTCTATGTCCAAACGGACAATATCATACCATTGTAGAGATATTTAGAGGGTCGTTGTCCTTATCAAGTGGTATTAGCCTAAAATGACAATATCATATCATTGTGGAGATACTTAAAAAGCCGTCCCTATCAAAATTAACCCTAGATTTTCCCCACCAAAATTTCTTTTGTTGTTTTCTTTTTCATTTTTTTCTTAGGAAAAAAAACAACAAAATGGGTATTACACATCATAACAATAATGAATTGATATAGAAAGATAGTGCATTTTTATGAACACCTTAAAATTTATTTTTCAACTCAATTCTAAGGATCTTTGATCAGTAAGTAGATATCCTTATATATGACTCATAAAAATTATAAGGCCTTCAATAACCTCGTAACCTCATCCCTCTCAACATATTCCAGGCTATTTCTCTAGTCAGGACCTTTACTAATGGATATTCTCTAATCACTAGGGGGAGATATCTTTTATATATGGCTCAGGATGATTATAAGGCCTTCAACCTTATCCCTTTTCATGTACTCCAAGCTATTTCTCTAGTCAAAATCTTTATTAATGGATCTAAAAGATTAATTTAATGTAATTCACATTAATAATCTTATTATTTCAAGATATGAGATGATGGTTTCTCCCACGTCATTTTAGAATTTCATATAGTAAATTTTTTAGCCAACTAGCTTCCTCAATAATATAGAAGCTAAAGCAATAAGAATCATAGTGGAATTGGAAATAATTGTTTTTTTTTTTTTTTTCCTTAAAACAAACTGTACGATGTGGCTTGGTTGAAGTGGCACATTTTAAGCGAGCTAGCAATTTTTATTAATTTTATATTAATTTAGGTTTATGTGTCATTTTTTTTTTTTAAATTTTTTTTTTTTCATTTCATTTCATTTTTCTCTTCCTCTTCCCTTCTCCCTCAATCTTCTGCCACCCTGGTTTTTATTTTCACCATGGACAATCACAAACGCATTCCATTTTGCTGTTGAAGAAAAACTCCAAACCTCTAAATTCTGATTTACTTCCATTTTGTTTCACTTTCTCCAAATCTCACCTCACTCCCCTTTTCTTCGGCTTCTCAATTTTGCCGATTGTCCTCCATTTCTGTCCACGATGTAAAACAATAACTTTGGTAGGTCCGGCTTGAAGGTCTGTGATAAATCTTTCACAAATTGTGAAAAGAGATTTTTCATCTAGAATAAATCTGATACTGCAGAGTAATTTATAGAGAGATTTTACAACATAAAGGATAACCAACTTAAACAGAAAACAACAAAAGGTTTAACTGATCTGTTCTCCAATGCTTTTGTGACCATGGCGTCAATTAATTCTTCGACAATGGTCAGGCCGAGGAGATCATGGGTCAGCCCATTCGGGACCTTGGATGGAACCACTCCAATATCTATCTCCACCAAGATCTTCTGGGGTGGTCCTGGTCCGAATGATAAGGGGCTTTCCAGAAAGCACGTCGTTCAAGTCACCGACGCTTCACTGAAGCGATTGGATTTGGAAGATTATGTTGATGTTATAAAATAAAAAAAATGACCTGTCAATATATATTGATGCCACATCATCTTTTCGTTAGTCAAATAACTTGACTATTTAAAACAGTTTTTCAAATTTCAAAGATAAAAAAGTGTCCATTTTAAAACTTCAAAGACTAAATAGATACATAGTTCAAACAGGGTTTGGTAGAAGTAGATCAAATAAACAAACATGCATGACATAGAACACCCGAATAATTGTTTCCTTTGGTCTTTTTTTATTCTTTTTTATTTTTTTTTTCCTCTTTTGCTTTTGCTTTTGCTTTTCAATTTATTTAATTAAGATTTTGCTACGAATTATGAGGAACTCACAAATCTTTACCACCCCCTCTTGGCTACCATTCACACACTCTAA

mRNA sequence

ATGGAAATCGACCTGTTTGATTTTATGGCTGATTATATTAGTTACTACATGAAATCAAAGATCAGCAGGTCGTTCAAAGTTCATCTTAATCCATATTTGATTAACTGGCTTCTGGCTCTATGGATAATTGATAACCAACTTAAACAGAAAACAACAAAAGGTTTAACTGATCTGTTCTCCAATGCTTTTGTGACCATGGCGTCAATTAATTCTTCGACAATGGTCAGGCCGAGGAGATCATGGGTCAGCCCATTCGGGACCTTGGATGGAACCACTCCAATATCTATCTCCACCAAGATCTTCTGGGGTGGTCCTGATTTTGCTACGAATTATGAGGAACTCACAAATCTTTACCACCCCCTCTTGGCTACCATTCACACACTCTAA

Coding sequence (CDS)

ATGGAAATCGACCTGTTTGATTTTATGGCTGATTATATTAGTTACTACATGAAATCAAAGATCAGCAGGTCGTTCAAAGTTCATCTTAATCCATATTTGATTAACTGGCTTCTGGCTCTATGGATAATTGATAACCAACTTAAACAGAAAACAACAAAAGGTTTAACTGATCTGTTCTCCAATGCTTTTGTGACCATGGCGTCAATTAATTCTTCGACAATGGTCAGGCCGAGGAGATCATGGGTCAGCCCATTCGGGACCTTGGATGGAACCACTCCAATATCTATCTCCACCAAGATCTTCTGGGGTGGTCCTGATTTTGCTACGAATTATGAGGAACTCACAAATCTTTACCACCCCCTCTTGGCTACCATTCACACACTCTAA

Protein sequence

MEIDLFDFMADYISYYMKSKISRSFKVHLNPYLINWLLALWIIDNQLKQKTTKGLTDLFSNAFVTMASINSSTMVRPRRSWVSPFGTLDGTTPISISTKIFWGGPDFATNYEELTNLYHPLLATIHTL
Homology
The following BLAST results are available for this feature:
BLAST of CaUC06G113310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G113310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G113310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G113310.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC06G113310CaUC06G113310gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G113310.1-exonCaUC06G113310.1-exon-Ciama_Chr06:8150884..8150892exon
CaUC06G113310.1-exonCaUC06G113310.1-exon-Ciama_Chr06:8151076..8151195exon
CaUC06G113310.1-exonCaUC06G113310.1-exon-Ciama_Chr06:8153090..8153276exon
CaUC06G113310.1-exonCaUC06G113310.1-exon-Ciama_Chr06:8153670..8153740exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G113310.1-cdsCaUC06G113310.1-cds-Ciama_Chr06:8150884..8150892CDS
CaUC06G113310.1-cdsCaUC06G113310.1-cds-Ciama_Chr06:8151076..8151195CDS
CaUC06G113310.1-cdsCaUC06G113310.1-cds-Ciama_Chr06:8153090..8153276CDS
CaUC06G113310.1-cdsCaUC06G113310.1-cds-Ciama_Chr06:8153670..8153740CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC06G113310.1CaUC06G113310.1-proteinpolypeptide