CaUC05G087840.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G087840.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Ciama_Chr05: 8208086 .. 8210637 (+)
Sequence length	812
RNA-Seq Expression	CaUC05G087840.1
Synteny	CaUC05G087840.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACTTCGCAATCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTACCATTTTTGTTACTAATTTTTGTTCATTGCAATTTGAACTTCAGAATTGTGTTTTGTGACAGTTGATGTTACGGTTTCCGTTCGAGTAATCAGGTTGTGATAGTAGTCAAATTCCGATTCATATAGGATGTATTTCTTAAGATGTGGAGGTAGAAGTTTGAAACCATAGTCCGAAAATAAGGCGAATCGTGAAGGGAATTACTATTTTGGCAAGATTGTGGGTTGAAATTAGATTATCTGTTGAAAAAACCTGCAAATCAGAAGCATTTGAGTTATGAAATGAAGAATATTATACTCTAGCCTCCTTCATTTCGTTTTGTGAATAGCTGTGGCAGATCTTCAATCACCAATCTTACTTTCTTACTATCGAAGTGCATATTTGGATTGTAAATTTAGGAAACATTCCATAACCATTTATGAATATGCTAATGTAATGCAAGAGTTCTCCAAAGCTAAGGATGTGAGATGAATGTAGATGTACAGTGTCCTCATTGTTACTTTCTTTTACTGGGAATATTTGCTTTCAATGTTACCTCTCCAGTTACTGTATATTCTTTAGTGAAAGAAAGGTGATCTTTTGATATTGGATTGGATTTCCTTTGTCCTCCTCTCCCCCTGGCATGTGTACACGTGCTACGGTAGCATCAATTTGGTTGTTCATTTGGCCTTCCGACACCAATCACTTGTTGCGAGGCTCTAGATTTGTCCTCTAACAAATATATTTGCATAAATATCTTACAATGCTTATATAAAGGAAATTGTAGTAACATATCCTTCCTTTTAGTGTAGGATTTTCCAATCAAAATAAGATGCTTATGATTTTTTCTGGCCTTGTGATGATTAATTTTGTCTGGAAGACCCTCAACTAACTGGTCTATGTTTTGAAGCATGTTTGCTTTGCTATGTAACTTCATAATGAATTTGACTAAATTACTGCTAATTTATATTTAATATTTTCTGGTGTTTCTTTCAAATGAAAATTCACTTAACTTGACTGAACTTAACACGCAGTATTCAAATCCTCTTGTCTACTTAAGTCTTTAGAAATGTTCACCGTTTCAGATTTTAGACAGTTTTTCAGTTAGATTATCATCCTTTTCAACTAGTTCCTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTCGACTTCCATTTGATATCCTTAAACCTAACGTAGCTGGATTAGATCGGGCAATATCCATTATACTATCTAAAAGGTTCTGATTGTTCAAATCCTGTTCTTTGACTCTCAAGTTAAGTCTTGGTTTTCACGAAAACCTTTATTTCAAAACTTGCTTGATTAATAGTTGTCTGGAGTTCAATGGTTTGACACTTCCGGCTTATATCTGCAACTGAAAACGTACCACAATGTACTTCATTATTATATATTTTTATTATTATTATTTAATTATACCATCAAACTAATTGAACGTGGGAAAGTGGTAGCTATTTTTAAATCTGTAAGTGCCTTTCATAGTTTTATGTGGACATTAGACAATATGTAGTCAACTTCTTTCCACTTCTATACCATTGAATTGTTTGATGGCTCTAAATATGCGAAATATTTTCTTGCTTTTATTTGACTAGTACGAATATGCACTTGGTTTGACTGTGTTTTAAGCCTATTTTCAGTGTAAAAATTTTGATGTATAAATCCTTTGATGAATATGGTGTCATAGTTCATGTTTTCATTTCACTTCCACATCCTCAACTTTGGTTGATGTGCACCTGCAGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAATTTAATCCTTTTTGCTTGATGTTCTGTATTTGATGTGAAGACCTGAAAAATCTCAAGTGCCTATAGATCTTGTTTATACAAAGTATCTCGTTTTACTGAGAAACTGAGGATGCAATTTTCTTTAGCTCAAAAGCAAATGAGATGCTGTTGGTGGATTCTAGGAAACACCTTGCCATCGT

mRNA sequence

TGAACTTCGCAATCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAATTTAATCCTTTTTGCTTGATGTTCTGTATTTGATGTGAAGACCTGAAAAATCTCAAGTGCCTATAGATCTTGTTTATACAAAGTATCTCGTTTTACTGAGAAACTGAGGATGCAATTTTCTTTAGCTCAAAAGCAAATGAGATGCTGTTGGTGGATTCTAGGAAACACCTTGCCATCGT

Coding sequence (CDS)

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA

Protein sequence

MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

Homology

[Close]

BLAST of CaUC05G087840.1 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 357.8 bits (917), Expect = 5.9e-95
Identity = 189/199 (94.97%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFTRKPYHLPNPSL+FPSKPKFII SQN SESEKPISK VDD+ LATSS
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPS+SSPQGFGSSS QSTTT+KSSPKAVKQKGKRQRASIIRRSPVEKPVFVG+VDEEAAK
Sbjct: 61  KPSSSSPQGFGSSSSQSTTTSKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGKVDEEAAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CaUC05G087840.1 vs. NCBI nr
Match: XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 3.8e-94
Identity = 184/199 (92.46%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPSTSSPQGFGSSSPQST+T+KS+PK+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CaUC05G087840.1 vs. NCBI nr
Match: KAA0067684.1 (protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 182/199 (91.46%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KP TSS QGFGSSSPQST+T+KS+PK+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CaUC05G087840.1 vs. NCBI nr
Match: XP_004148133.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_010547 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of CaUC05G087840.1 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 3.1e-80
Identity = 167/203 (82.27%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDD+++    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAV---- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QSTT++KSSPKA     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.6e-42
Identity = 105/198 (53.03%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  HSP SF+ +PYHL          P+F IK QNS           D +   + S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIES-------DTTEDPSRS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           K S+SS  GFGS +  S+   K S      K  + +  + RR+PVEKPVF+ E     A+
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKREVNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL
Match: A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.9e-94
Identity = 184/199 (92.46%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KPSTSSPQGFGSSSPQST+T+KS+PK+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.8e-93
Identity = 182/199 (91.46%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           KP TSS QGFGSSSPQST+T+KS+PK+VKQKGKRQRASIIRRSPVEKPVFVGEVDE+ AK
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL
Match: A0A0A0L8E3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 173/199 (86.93%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A   
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
              TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 200
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 193

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 167/203 (82.27%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDD+++    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAV---- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QSTT++KSSPKA     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.6e-80
Identity = 168/203 (82.76%), Postives = 177/203 (87.19%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDD+ +    
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPV---- 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120
              TSS QGFGS S QSTT++KSSPKA     KQKGKRQRASIIRRSPVEKPVFVGEVDE
Sbjct: 61  --GTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKIKDEKS 200
           VAGTVAYGV KYLQNEK+K +KS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CaUC05G087840.1 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-43
Identity = 105/198 (53.03%), Postives = 129/198 (65.15%), Query Frame = 0


Query: 1   MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSS 60
           MALQI  HSP SF+ +PYHL          P+F IK QNS           D +   + S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIES-------DTTEDPSRS 60

Query: 61  KPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGEVDEEAAK 120
           K S+SS  GFGS +  S+   K S      K  + +  + RR+PVEKPVF+ E     A+
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKREVNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 199
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of CaUC05G087840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899637.1	5.9e-95	94.97	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]
XP_008439106.1	3.8e-94	92.46	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
KAA0067684.1	1.6e-92	91.46	protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein L...	[more]
XP_004148133.1	3.1e-88	86.93	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hyp...	[more]
XP_022973018.1	3.1e-80	82.27	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]

BLAST of CaUC05G087840.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	4.6e-42	53.03	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of CaUC05G087840.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AXX6	1.9e-94	92.46	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VJY0	7.8e-93	91.46	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0L8E3	1.5e-88	86.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1	[more]
A0A6J1IBT8	1.5e-80	82.27	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FNA7	2.6e-80	82.76	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CaUC05G087840.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	3.3e-43	53.03	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..198

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC05G087840	CaUC05G087840	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G087840.1-exon	CaUC05G087840.1-exon-Ciama_Chr05:8208086..8208569	exon
CaUC05G087840.1-exon	CaUC05G087840.1-exon-Ciama_Chr05:8210310..8210637	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G087840.1-five_prime_utr	CaUC05G087840.1-five_prime_utr-Ciama_Chr05:8208086..8208118	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G087840.1-cds	CaUC05G087840.1-cds-Ciama_Chr05:8208119..8208569	CDS
CaUC05G087840.1-cds	CaUC05G087840.1-cds-Ciama_Chr05:8210310..8210458	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G087840.1-three_prime_utr	CaUC05G087840.1-three_prime_utr-Ciama_Chr05:8210459..8210637	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC05G087840.1	CaUC05G087840.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane