CaUC04G078830.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G078830.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein kinase superfamily protein
Location	Ciama_Chr04: 28113798 .. 28115461 (+)
Sequence length	784
RNA-Seq Expression	CaUC04G078830.1
Synteny	CaUC04G078830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCCCCATGCCTACACCGCCAGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGGTGATCCCAACCAAGAAGCATTCCAACAAATATTCAGCAAAGAAAAAAAGAGGCTTGAGAGAATTGAGAAACCTCGAAAGCTTTATTTCCTATGATAAAAAAGCACAAAGCAAGCATAGAGAAGGGTCTTTATCGATATGACCTCTGATCTTAGTGCATTTGATTGCTTCGGTTTTGAGTTGGATTGGCAGCCTTCTTCCTAATTGCTGGGCTTTTCATTGTGATGGATCATGTTCATCTTTGATGTGCGCTTTGGCTTCTTCCATTTGGATTAAGATGGATGGATCGTGGTGCTGTTTTGTTTCAGTCCTTGCTTTTGTCAGATTGGATTATGTCTTTTCTTCATCTCTCCCTCCCTTGTACATCATTGATTGTATCTTTCTTTCTTGGGTTCTACGTTTGTTGTGTCTTTGGTTTTTTCCCCTTTTTGGATTATTTCCTATTGTACTGTTTGGATATTTCATTCATCGATAAAATTGTTTTTTACATAAAAAAAAAATGTGCATATTTTCACTTCAACCTGTCTTTCAAATAAACTAAAACAAACTTTTAGATTGAAAATGAAGATGACATTGCAGTCTAAATCAAATCAAAAGCAATTATACGAAATTATGTACTGAACGTACTCTTGTTCTCTTTCTCTGTCATGCCTGTCTTCTTTGCTTAGAAAATTTGTGACTTACTTTGTACGAAGTTGGTAATGTCATTTTCCTCTTGGTCACCCACGCTGGAGAAAATATAAAATAACTTGAGTGGCCTGTTACAATTTATCTTTTTTCATGTTTCCTTGTAATCAGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAAATGTGTTAATCCTCACATAACCATCGAATGCTTCCAGCTGATTGGTTCGGTGTTCGTCCTTGTTTTGTATTTGTAATGTTCTGTACATGTTCGTGTAAGTCTTTCTTAGCTCCTCTACATGCATTTACAACTTTATTTGCGATTGGTGGAGTGATTTGATCATTTTTGTAACTGCAGAGACAGAAAAATTTTAGAGGCGAAATCTTGTTCGAGATGCTCTCTTTCAAATTATAGGCGCCATCTTCAGAATCATGTGGCCTTAAGTTATCATTTTTCGTTCTACGTTTCACTTCTCTCTTCCAACTCACCTCACAGTGAGTTCAGAACTTCAATTTTCCATTGTTTAAATGGTCCCATAACTGTTTTACCCATTTTCTCAGACATTCCGTTTATTTATGTATTTATAATATATACATTGAGTTCAGAACTTCAATCTTCCATTGTTTAAATGGTTCCATAACTGTTCTACCCTTTTTCTCAGACATTCCGTATATTTATGTATTTATAATATATATTATATAACAAAGAGAAGCATCATTGTGTACAGCATTTCGTTTGGCATCCATCCTGACCATATGAAGGCAAGTTGCAATAAAATCAGAAGGCGTTTGTTTC

mRNA sequence

ATGTCAAGCCCCATGCCTACACCGCCAGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAAATGTGTTAATCCTCACATAACCATCGAATGCTTCCAGCTGATTGGTTCGGTGTTCGTCCTTGTTTTGTATTTGTAATGTTCTGTACATGTTCGTAGACAGAAAAATTTTAGAGGCGAAATCTTGTTCGAGATGCTCTCTTTCAAATTATAGGCGCCATCTTCAGAATCATGTGGCCTTAAGTTATCATTTTTCGTTCTACGTTTCACTTCTCTCTTCCAACTCACCTCACAGTGAGTTCAGAACTTCAATTTTCCATTGTTTAAATGGTCCCATAACTGTTTTACCCATTTTCTCAGACATTCCGTTTATTTATGTATTTATAATATATACATTGAGTTCAGAACTTCAATCTTCCATTGTTTAAATGGTTCCATAACTGTTCTACCCTTTTTCTCAGACATTCCGTATATTTATGTATTTATAATATATATTATATAACAAAGAGAAGCATCATTGTGTACAGCATTTCGTTTGGCATCCATCCTGACCATATGAAGGCAAGTTGCAATAAAATCAGAAGGCGTTTGTTTC

Coding sequence (CDS)

ATGTCAAGCCCCATGCCTACACCGCCAGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA

Protein sequence

MSSPMPTPPVSPHPSIYDHMEASWYDFIPPTTDGPFNPTPHLIALALWFRELGMCIRNLSQLASINYDLLSKGLKDDPPNHDA

Homology

[Close]

BLAST of CaUC04G078830.1 vs. NCBI nr
Match: XP_011649519.1 (probable serine/threonine protein kinase IREH1 [Cucumis sativus] >KAE8652490.1 hypothetical protein Csa_013146 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]

BLAST of CaUC04G078830.1 vs. NCBI nr
Match: KAA0036022.1 (putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa] >TYJ98819.1 putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 98  KNLSQLASINYDLLSKGLKDDPPNHDA 124

[Close]

BLAST of CaUC04G078830.1 vs. NCBI nr
Match: XP_038893957.1 (probable serine/threonine protein kinase IREH1 isoform X2 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]

BLAST of CaUC04G078830.1 vs. NCBI nr
Match: XP_008443041.1 (PREDICTED: probable serine/threonine protein kinase IREH1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]

BLAST of CaUC04G078830.1 vs. NCBI nr
Match: XP_038893956.1 (probable serine/threonine protein kinase IREH1 isoform X1 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1293 KNLSQLASINYDLLSKGLKDDPPNHDA 1319

[Close]

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL
Match: A0A5D3BIK4 (Putative serine/threonine protein kinase IREH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00070 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 98  KNLSQLASINYDLLSKGLKDDPPNHDA 124

[Close]

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL
Match: A0A0A0LSH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031190 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 504 KNLSQLASINYDLLSKGLKDDPPNHDA 530

[Close]

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL
Match: A0A1S3B6M3 (probable serine/threonine protein kinase IREH1 OS=Cucumis melo OX=3656 GN=LOC103486458 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL
Match: A0A6J1G9M9 (probable serine/threonine protein kinase IREH1 OS=Cucurbita moschata OX=3662 GN=LOC111452222 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPP+HDA
Sbjct: 1270 KNLSQLASINYDLLSKGLKDDPPDHDA 1296

[Close]

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL
Match: A0A6J1KF88 (probable serine/threonine protein kinase IREH1 OS=Cucurbita maxima OX=3661 GN=LOC111493337 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPP HDA
Sbjct: 1270 KNLSQLASINYDLLSKGLKDDPPYHDA 1296

[Close]

BLAST of CaUC04G078830.1 vs. TAIR 10
Match: AT3G17850.1 (Protein kinase superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 57   RNLSQLASINYDLLSKGLKDDP---PNH 82
            +NLSQLASINYDLLSKG KD+P   P+H
Sbjct: 1268 KNLSQLASINYDLLSKGWKDEPQQIPHH 1295

The following BLAST results are available for this feature:

BLAST of CaUC04G078830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649519.1	4.0e-05	96.30	probable serine/threonine protein kinase IREH1 [Cucumis sativus] >KAE8652490.1 h...	[more]
KAA0036022.1	4.0e-05	96.30	putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa] >TYJ98...	[more]
XP_038893957.1	4.0e-05	96.30	probable serine/threonine protein kinase IREH1 isoform X2 [Benincasa hispida]	[more]
XP_008443041.1	4.0e-05	96.30	PREDICTED: probable serine/threonine protein kinase IREH1 [Cucumis melo]	[more]
XP_038893956.1	4.0e-05	96.30	probable serine/threonine protein kinase IREH1 isoform X1 [Benincasa hispida]	[more]

BLAST of CaUC04G078830.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G078830.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIK4	2.0e-05	96.30	Putative serine/threonine protein kinase IREH1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LSH8	2.0e-05	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031190 PE=4 SV=1	[more]
A0A1S3B6M3	2.0e-05	96.30	probable serine/threonine protein kinase IREH1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1G9M9	7.4e-05	92.59	probable serine/threonine protein kinase IREH1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KF88	1.7e-04	92.59	probable serine/threonine protein kinase IREH1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CaUC04G078830.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17850.1	1.3e-04	75.00	Protein kinase superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC04G078830	CaUC04G078830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078830.1-exon	CaUC04G078830.1-exon-Ciama_Chr04:28113798..28113968	exon
CaUC04G078830.1-exon	CaUC04G078830.1-exon-Ciama_Chr04:28114766..28114940	exon
CaUC04G078830.1-exon	CaUC04G078830.1-exon-Ciama_Chr04:28115024..28115461	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078830.1-cds	CaUC04G078830.1-cds-Ciama_Chr04:28113798..28113968	CDS
CaUC04G078830.1-cds	CaUC04G078830.1-cds-Ciama_Chr04:28114766..28114846	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078830.1-three_prime_utr	CaUC04G078830.1-three_prime_utr-Ciama_Chr04:28114847..28114940	three_prime_UTR
CaUC04G078830.1-three_prime_utr	CaUC04G078830.1-three_prime_utr-Ciama_Chr04:28115024..28115461	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC04G078830.1	CaUC04G078830.1-protein	polypeptide