CaUC04G078640.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G078640.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	MYB transcription factor
Location	Ciama_Chr04: 27919601 .. 27920407 (+)
Sequence length	690
RNA-Seq Expression	CaUC04G078640.1
Synteny	CaUC04G078640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGCAGAGGGCACTGGCGGCCTGCGGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAGTTGGATCCACGAATCAACCGAACCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACACAGGGTTCACGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGATAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGATCAAATAGATCCAAAACCCTAACCCAAACCCAAACCCAAACCCCATCCTCTCTTCATCACAATAATCATAATCATCGCCTTCTTCTTTCTTCCTTTCTCCAACTCCATCCATATCCCACTCCTACTCCTATCTCATTCATCCCCAAACCACCTGGTAACTAATTTTATTTGTTTGTTCTTTCTTTCTCGATATCACTAACTATTTTGTTATATTTAAAAATATTTACAACTTTTTACTCATTTAAAATGTTTACTATTATTTTGAGCTCAGATAATGCAACGCATAATTCCATTCATTATTACGACTTTCTCCATGTAAATACGGAGTCCATCAATGGGAGTGAAGTGATAGACAACTCAAGAAAAGAAGAGGATTATGACGAGGTCAATAATCAAGAAGCCGCCACCGTCGACGACGTCGGGCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAGACCTCCAACAACTCCATCTCATCCTAA

mRNA sequence

ATGTGCAGCAGAGGGCACTGGCGGCCTGCGGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAGTTGGATCCACGAATCAACCGAACCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACACAGGGTTCACGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGATAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGATCAAATAGATCCAAAACCCTAACCCAAACCCAAACCCAAACCCCATCCTCTCTTCATCACAATAATCATAATCATCGCCTTCTTCTTTCTTCCTTTCTCCAACTCCATCCATATCCCACTCCTACTCCTATCTCATTCATCCCCAAACCACCTGATAATGCAACGCATAATTCCATTCATTATTACGACTTTCTCCATGTAAATACGGAGTCCATCAATGGGAGTGAAGTGATAGACAACTCAAGAAAAGAAGAGGATTATGACGAGGTCAATAATCAAGAAGCCGCCACCGTCGACGACGTCGGGCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAGACCTCCAACAACTCCATCTCATCCTAA

Coding sequence (CDS)

ATGTGCAGCAGAGGGCACTGGCGGCCTGCGGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAGTTGGATCCACGAATCAACCGAACCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACACAGGGTTCACGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGATAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGATCAAATAGATCCAAAACCCTAACCCAAACCCAAACCCAAACCCCATCCTCTCTTCATCACAATAATCATAATCATCGCCTTCTTCTTTCTTCCTTTCTCCAACTCCATCCATATCCCACTCCTACTCCTATCTCATTCATCCCCAAACCACCTGATAATGCAACGCATAATTCCATTCATTATTACGACTTTCTCCATGTAAATACGGAGTCCATCAATGGGAGTGAAGTGATAGACAACTCAAGAAAAGAAGAGGATTATGACGAGGTCAATAATCAAGAAGCCGCCACCGTCGACGACGTCGGGCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAGACCTCCAACAACTCCATCTCATCCTAA

Protein sequence

MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQTPSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKPPDNATHNSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSNNSISS

Homology

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BLAST of CaUC04G078640.1 vs. NCBI nr
Match: XP_038895550.1 (transcription factor MYB54-like [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-92
Identity = 193/243 (79.42%), Postives = 204/243 (83.95%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERLMASHR+HGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SK    TQTQT
Sbjct: 61  EEEEERLMASHRLHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSK----TQTQT 120

Query: 121 PS-SLHHNNHNH--------RLLLSSFLQLHPYPTPTPISFIPKPPD---NATHNSIHYY 180
           PS SLHH+N+NH        RLLLSSFLQLH  PT   + FIPKPP      T+ S+HYY
Sbjct: 121 PSNSLHHHNNNHHHHHHNHNRLLLSSFLQLHTCPTSNSL-FIPKPPSVDAARTNASVHYY 180

Query: 181 DFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTS--NNS 230
           DFL+VNTESINGSEVIDNSRK EDY+EVNN E  +      VLPFIDFFSASQTS  N+S
Sbjct: 181 DFLNVNTESINGSEVIDNSRK-EDYEEVNNGEHQS------VLPFIDFFSASQTSTNNDS 230

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BLAST of CaUC04G078640.1 vs. NCBI nr
Match: XP_008455801.1 (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-90
Identity = 182/238 (76.47%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKT T TQT T
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKPPDN------ATHNS---IHYYDFL 180
            +  +++N+NHRLLLSSFLQLH YPT T ISF+PKPP +      A H+S   IHYYDFL
Sbjct: 121 QTHNNNHNNNHRLLLSSFLQLHAYPTST-ISFVPKPPSDDAAAAAAAHSSCSIIHYYDFL 180

Query: 181 HVN-TESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSNNSIS 229
            VN T+S NGSEVIDNS ++EDY+EVNN   +  +    +LPFIDFFSAS  ++ SIS
Sbjct: 181 QVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSG-EQQAVLLPFIDFFSAS-NNDTSIS 234

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BLAST of CaUC04G078640.1 vs. NCBI nr
Match: XP_011649446.1 (transcription factor MYB52 [Cucumis sativus] >KGN63930.1 hypothetical protein Csa_013427 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 8.6e-90
Identity = 185/238 (77.73%), Postives = 202/238 (84.87%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKT T TQT T
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKPPDN------ATHNS---IHYYDFL 180
            +  ++NN+N+RLLLSSFLQLH YPT + ISFIPKPP +      A H+S   IHYYDFL
Sbjct: 121 QTH-NNNNNNNRLLLSSFLQLHAYPT-SNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFL 180

Query: 181 HVN-TESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSNNSIS 229
            VN T+S+NGSEVIDNS ++EDY+EVNN        V  +LPFIDFFSAS ++N SIS
Sbjct: 181 QVNSTDSMNGSEVIDNSSRKEDYEEVNNNNNGEQQAV--LLPFIDFFSAS-SNNTSIS 232

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BLAST of CaUC04G078640.1 vs. NCBI nr
Match: XP_023001003.1 (transcription factor MYB52-like [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 3.9e-82
Identity = 174/250 (69.60%), Postives = 190/250 (76.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSN---------RSK 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR +         ++K
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 TLTQTQTQTPSSLHHNNHNHRLLLSSFLQLHPYPT-----------PTPI-SFIPKPPDN 180
            +T+TQT +PSS  H      LLLSSFLQ    P            P PI SFIPKP D 
Sbjct: 121 AITKTQTLSPSSQSH------LLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPTD- 180

Query: 181 ATHNSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSA 230
               S+ +YDFLH+N ESIN SEVIDNSRK EDY+EVN +  AT     P+ PFIDFFSA
Sbjct: 181 ---RSVEFYDFLHLNAESINASEVIDNSRK-EDYEEVNQEATATA--ARPLFPFIDFFSA 236

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BLAST of CaUC04G078640.1 vs. NCBI nr
Match: XP_023520216.1 (transcription factor MYB52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-80
Identity = 171/245 (69.80%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSN---RSKTLTQTQ 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR +   ++K   +T+
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 TQTPSSLHHNNHNHRLLLSSFLQLHPYPT------------PTPI-SFIPKPPDNATHNS 180
           T TPSS +H      LL SSFLQ    P             P PI SFIPKP D     S
Sbjct: 121 TLTPSSQNH------LLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPTD----RS 180

Query: 181 IHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSN 230
           + +YDFLH+N ESIN SEVIDNSRK EDY+EVN +  AT     P+ PFIDFFSA QTSN
Sbjct: 181 VEFYDFLHLNAESINASEVIDNSRK-EDYEEVNQEATATA--ARPLFPFIDFFSA-QTSN 231

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BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.6e-60
Identity = 131/257 (50.97%), Postives = 154/257 (59.92%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-------------- 120
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR R              
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 --------------SNRSKTLTQTQTQTPSSLHHNNHNHRL--LLSSFLQLHPYPTPTPI 180
                             +  T T    P    H NH   L   L+  +      TP   
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTP--- 181

Query: 181 SFIPKPPDNATHNSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPV 228
             I +   + T   + +Y+FL VNT+S    E+IDNSRK+E+ D   N      + V   
Sbjct: 182 --IQEGAIDQTKRPMEFYNFLQVNTDS-KIHELIDNSRKDEEEDVDQNNRIPNENCV--- 241

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BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-58
Identity = 126/253 (49.80%), Postives = 157/253 (62.06%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR+R      L  + T +
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPT-----PISFIPKPPDNATHNSIH--------- 180
            S +     + ++++SS    H Y +       P  FI  P   +  N +H         
Sbjct: 123 SSLM----ASEQIMMSSGGYNHNYSSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGK 182

Query: 181 ---------------YYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVL 225
                          +Y+FL VNT+S N SE+ID    +    + + +  + V       
Sbjct: 183 IALNHKANQSKKPMEFYNFLQVNTDS-NKSEIIDQDSGQSKRSDSDTKHESHV------- 242

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BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-50
Identity = 94/154 (61.04%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           +C+RGHWRPAED KL++LV +YGP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT
Sbjct: 46  LCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFT 105

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRS-----NRSKTLTQ 120
           EEEEERLMA+HR +GN+WA+IARLFPGRTDNAVKNHWHV+MARR R       R K  + 
Sbjct: 106 EEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRRKPSSS 165

Query: 121 TQTQTPS-----------SLHHNNHNHRLLLSSF 139
           + +  P+           +LHH++H +    S +
Sbjct: 166 SASPAPAPAPPPPPQPVVALHHHHHRYSQQYSGY 199

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BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.0e-48
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQTPSS 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R + S    +        
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 LHHNNHNHRLLLSSFLQLHPYPTPTPISFI--------PKPPDNATHNSIH 167
             H  +NH          HP P P   SFI        P P  N TH+ ++
Sbjct: 218 KPHLTNNH----------HPNPNPNYHSFISTNHYFAQPFPEFNLTHHLVN 258

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.0e-48
Identity = 87/108 (80.56%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62
           SRGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRS 111
           EEERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+ R   S
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSS 213

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL
Match: A0A1S3C1Q2 (transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.9e-90
Identity = 182/238 (76.47%), Postives = 201/238 (84.45%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKT T TQT T
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKPPDN------ATHNS---IHYYDFL 180
            +  +++N+NHRLLLSSFLQLH YPT T ISF+PKPP +      A H+S   IHYYDFL
Sbjct: 121 QTHNNNHNNNHRLLLSSFLQLHAYPTST-ISFVPKPPSDDAAAAAAAHSSCSIIHYYDFL 180

Query: 181 HVN-TESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSNNSIS 229
            VN T+S NGSEVIDNS ++EDY+EVNN   +  +    +LPFIDFFSAS  ++ SIS
Sbjct: 181 QVNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSG-EQQAVLLPFIDFFSAS-NNDTSIS 234

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL
Match: A0A0A0LPV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 4.2e-90
Identity = 185/238 (77.73%), Postives = 202/238 (84.87%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKT T TQT T
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKPPDN------ATHNS---IHYYDFL 180
            +  ++NN+N+RLLLSSFLQLH YPT + ISFIPKPP +      A H+S   IHYYDFL
Sbjct: 121 QTH-NNNNNNNRLLLSSFLQLHAYPT-SNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFL 180

Query: 181 HVN-TESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTSNNSIS 229
            VN T+S+NGSEVIDNS ++EDY+EVNN        V  +LPFIDFFSAS ++N SIS
Sbjct: 181 QVNSTDSMNGSEVIDNSSRKEDYEEVNNNNNGEQQAV--LLPFIDFFSAS-SNNTSIS 232

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL
Match: A0A6J1KP91 (transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.9e-82
Identity = 174/250 (69.60%), Postives = 190/250 (76.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSN---------RSK 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR +         ++K
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 TLTQTQTQTPSSLHHNNHNHRLLLSSFLQLHPYPT-----------PTPI-SFIPKPPDN 180
            +T+TQT +PSS  H      LLLSSFLQ    P            P PI SFIPKP D 
Sbjct: 121 AITKTQTLSPSSQSH------LLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPTD- 180

Query: 181 ATHNSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSA 230
               S+ +YDFLH+N ESIN SEVIDNSRK EDY+EVN +  AT     P+ PFIDFFSA
Sbjct: 181 ---RSVEFYDFLHLNAESINASEVIDNSRK-EDYEEVNQEATATA--ARPLFPFIDFFSA 236

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL
Match: A0A6J1EDT2 (transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.9e-81
Identity = 171/247 (69.23%), Postives = 187/247 (75.71%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSN-----RSKTLTQ 120
           EEEEERLM SHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+SR +     ++K  T+
Sbjct: 61  EEEEERLMTSHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 TQTQTPSSLHHNNHNHRLLLSSFLQLHPYPT------------PTPI-SFIPKPPDNATH 180
           T+T TPSS +H      LL SSFLQ    P             P PI SFIPKP D    
Sbjct: 121 TKTLTPSSQNH------LLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPTD---- 180

Query: 181 NSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQT 230
            S+ +YDFLH+N ESIN SEVIDNSRK EDY+EVN +  AT     P+ PFIDFFSA QT
Sbjct: 181 RSVEFYDFLHLNAESINASEVIDNSRK-EDYEEVNQEATATA--ARPLFPFIDFFSA-QT 233

[Close]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL
Match: A0A6J1CAM4 (transcription factor MYB52-like OS=Momordica charantia OX=3673 GN=LOC111008971 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.5e-66
Identity = 144/227 (63.44%), Postives = 168/227 (74.01%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVER+G HNWNAIAQK++GRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 35  MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 94

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR  R ++S          
Sbjct: 95  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKS---------- 154

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPTPISFIPKP-PDNAT-HNSIHYYDFLHVNTESI 180
                   ++HRL   +F  ++ Y +P P S IP P PD +  H  + +YDFLH+N + I
Sbjct: 155 ------TQNHHRLF--NFPNIY-YSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADYI 214

Query: 181 NG--SEVIDNSRKEEDYDEVNNQEAATVDDVGPVLPFIDFFSASQTS 224
               SEVIDNSRK++  +EVN Q  A  DD  P LPFIDFFSA QTS
Sbjct: 215 TATRSEVIDNSRKDD--EEVNQQ--AQADDALP-LPFIDFFSA-QTS 236

[Close]

BLAST of CaUC04G078640.1 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 231.5 bits (589), Expect = 6.8e-61
Identity = 131/257 (50.97%), Postives = 154/257 (59.92%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-------------- 120
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR R              
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 --------------SNRSKTLTQTQTQTPSSLHHNNHNHRL--LLSSFLQLHPYPTPTPI 180
                             +  T T    P    H NH   L   L+  +      TP   
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTP--- 181

Query: 181 SFIPKPPDNATHNSIHYYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPV 228
             I +   + T   + +Y+FL VNT+S    E+IDNSRK+E+ D   N      + V   
Sbjct: 182 --IQEGAIDQTKRPMEFYNFLQVNTDS-KIHELIDNSRKDEEEDVDQNNRIPNENCV--- 241

[Close]

BLAST of CaUC04G078640.1 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-59
Identity = 126/253 (49.80%), Postives = 157/253 (62.06%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT 120
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR+R      L  + T +
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 PSSLHHNNHNHRLLLSSFLQLHPYPTPT-----PISFIPKPPDNATHNSIH--------- 180
            S +     + ++++SS    H Y +       P  FI  P   +  N +H         
Sbjct: 123 SSLM----ASEQIMMSSGGYNHNYSSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGK 182

Query: 181 ---------------YYDFLHVNTESINGSEVIDNSRKEEDYDEVNNQEAATVDDVGPVL 225
                          +Y+FL VNT+S N SE+ID    +    + + +  + V       
Sbjct: 183 IALNHKANQSKKPMEFYNFLQVNTDS-NKSEIIDQDSGQSKRSDSDTKHESHV------- 242

[Close]

BLAST of CaUC04G078640.1 vs. TAIR 10
Match: AT4G33450.1 (myb domain protein 69 )

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-50
Identity = 117/241 (48.55%), Postives = 139/241 (57.68%), Query Frame = 0


Query: 2   CSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTE 61
           C RGHWRP ED+ LR+LVE+YGP NWN IAQ L GRSGKSCRLRW+NQLDP I + PFTE
Sbjct: 17  CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query: 62  EEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQT- 121
           EEEERL+ +HR+ GNRWA IARLFPGRTDNAVKNH+HVIMARR R N S T T T  QT 
Sbjct: 77  EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFSSTATSTFNQTW 136

Query: 122 ------PSSLHHNNHNH----RLLLSSFLQLHPYPTPTPISFIPKPPDNATHNSIHYYDF 181
                  SSL   N +H    R        L PY      SF+  PP N    S    + 
Sbjct: 137 HTVLSPSSSLTRLNRSHFGLWRYRKDKSCGLWPY------SFV-SPPTNGQFGSSSVSNV 196

Query: 182 LH-VNTESINGSEVIDNSR-----KEEDYDEVNNQEAATVDDVGPV--LPFIDFFSASQT 224
            H +  E     E++D           D+   +N++  ++ D G    + FIDF      
Sbjct: 197 HHEIYLERRKSKELVDPQNYTFHAATPDHKMTSNEDGPSMGDDGEKNDVTFIDFLGVGLA 250

[Close]

BLAST of CaUC04G078640.1 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 194.9 bits (494), Expect = 7.1e-50
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQTPSS 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R + S    +        
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 LHHNNHNHRLLLSSFLQLHPYPTPTPISFI--------PKPPDNATHNSIH 167
             H  +NH          HP P P   SFI        P P  N TH+ ++
Sbjct: 218 KPHLTNNH----------HPNPNPNYHSFISTNHYFAQPFPEFNLTHHLVN 258

[Close]

BLAST of CaUC04G078640.1 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 194.9 bits (494), Expect = 7.1e-50
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRSNRSKTLTQTQTQTPSS 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R + S    +        
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 LHHNNHNHRLLLSSFLQLHPYPTPTPISFI--------PKPPDNATHNSIH 167
             H  +NH          HP P P   SFI        P P  N TH+ ++
Sbjct: 218 KPHLTNNH----------HPNPNPNYHSFISTNHYFAQPFPEFNLTHHLVN 258

The following BLAST results are available for this feature:

BLAST of CaUC04G078640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895550.1	1.4e-92	79.42	transcription factor MYB54-like [Benincasa hispida]	[more]
XP_008455801.1	3.9e-90	76.47	PREDICTED: transcriptional activator Myb-like [Cucumis melo]	[more]
XP_011649446.1	8.6e-90	77.73	transcription factor MYB52 [Cucumis sativus] >KGN63930.1 hypothetical protein Cs...	[more]
XP_023001003.1	3.9e-82	69.60	transcription factor MYB52-like [Cucurbita maxima]	[more]
XP_023520216.1	1.2e-80	69.80	transcription factor MYB52-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC04G078640.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R0C4	9.6e-60	50.97	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q9FX36	3.1e-58	49.80	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q5NBM8	9.0e-50	61.04	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9LQX5	1.0e-48	58.48	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]
Q9SEZ4	5.0e-48	80.56	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]

BLAST of CaUC04G078640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1Q2	1.9e-90	76.47	transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 ...	[more]
A0A0A0LPV0	4.2e-90	77.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1	[more]
A0A6J1KP91	1.9e-82	69.60	transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4...	[more]
A0A6J1EDT2	7.9e-81	69.23	transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE...	[more]
A0A6J1CAM4	2.5e-66	63.44	transcription factor MYB52-like OS=Momordica charantia OX=3673 GN=LOC111008971 P...	[more]

BLAST of CaUC04G078640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17950.1	6.8e-61	50.97	myb domain protein 52	[more]
AT1G73410.1	2.2e-59	49.80	myb domain protein 54	[more]
AT4G33450.1	4.2e-50	48.55	myb domain protein 69	[more]
AT1G26780.1	7.1e-50	58.48	myb domain protein 117	[more]
AT1G26780.2	7.1e-50	58.48	myb domain protein 117	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..52 e-value: 3.6E-15 score: 66.4 coord: 55..103 e-value: 5.4E-14 score: 62.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 1..50 score: 11.230598
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 51..101 score: 9.697762
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 58..98 e-value: 5.70924E-11 score: 54.1186
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..48 e-value: 1.67757E-14 score: 63.3634
None	No IPR available	GENE3D	1.10.10.60		coord: 57..132 e-value: 5.4E-19 score: 70.0
None	No IPR available	GENE3D	1.10.10.60		coord: 4..55 e-value: 1.7E-24 score: 87.5
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 7..67 e-value: 8.6E-17 score: 61.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..126
None	No IPR available	PANTHER	PTHR45614:SF111	MYB-RELATED PROTEIN A-LIKE	coord: 162..220
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 1..113 coord: 162..220
None	No IPR available	PANTHER	PTHR45614:SF111	MYB-RELATED PROTEIN A-LIKE	coord: 1..113
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..54 score: 25.942102
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 55..105 score: 22.804882
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 4..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC04G078640	CaUC04G078640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078640.1-exon	CaUC04G078640.1-exon-Ciama_Chr04:27919601..27920072	exon
CaUC04G078640.1-exon	CaUC04G078640.1-exon-Ciama_Chr04:27920190..27920407	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078640.1-cds	CaUC04G078640.1-cds-Ciama_Chr04:27919601..27920072	CDS
CaUC04G078640.1-cds	CaUC04G078640.1-cds-Ciama_Chr04:27920190..27920407	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC04G078640.1	CaUC04G078640.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding