CaUC04G074340.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G074340.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr04: 23438972 .. 23439442 (-)
Sequence length471
RNA-Seq ExpressionCaUC04G074340.1
SyntenyCaUC04G074340.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCCATGAGTTACAATGGCTCTAACTGCATTGGCCTGCTCATGCTAAATGCCAACAGCTACAACTATCCTACAGCGGAGTTCAGTTTAACGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAATCCTGAGGGTGAACAGACTTACCACAGTTATTACGGATGGTTGTCGAGTGAACTCGACTCCACTGATCTCTTCGATTGCCAAGACCCTTATGGCAATCAAAATGGATGCAGAATGGAGAATACAGAACTCATTCTACTCCAGAATGAGGATCAAGTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTACTTGGGATTGCTTTCAGTTATGGTTTGGATTTGGGGAAGATGAGCAAGGTCAAGACTGGAATGGGCAAGAATTGAAACCTGAAAACGACTGCAATTCTGATGCTTTGGCACTCCTAGAAGCCATCCTGGGCTATTGA

mRNA sequence

ATGTCTGCCATGAGTTACAATGGCTCTAACTGCATTGGCCTGCTCATGCTAAATGCCAACAGCTACAACTATCCTACAGCGGAGTTCAGTTTAACGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAATCCTGAGGGTGAACAGACTTACCACAGTTATTACGGATGGTTGTCGAGTGAACTCGACTCCACTGATCTCTTCGATTGCCAAGACCCTTATGGCAATCAAAATGGATGCAGAATGGAGAATACAGAACTCATTCTACTCCAGAATGAGGATCAAGTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTACTTGGGATTGCTTTCAGTTATGGTTTGGATTTGGGGAAGATGAGCAAGGTCAAGACTGGAATGGGCAAGAATTGAAACCTGAAAACGACTGCAATTCTGATGCTTTGGCACTCCTAGAAGCCATCCTGGGCTATTGA

Coding sequence (CDS)

ATGTCTGCCATGAGTTACAATGGCTCTAACTGCATTGGCCTGCTCATGCTAAATGCCAACAGCTACAACTATCCTACAGCGGAGTTCAGTTTAACGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAATCCTGAGGGTGAACAGACTTACCACAGTTATTACGGATGGTTGTCGAGTGAACTCGACTCCACTGATCTCTTCGATTGCCAAGACCCTTATGGCAATCAAAATGGATGCAGAATGGAGAATACAGAACTCATTCTACTCCAGAATGAGGATCAAGTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTACTTGGGATTGCTTTCAGTTATGGTTTGGATTTGGGGAAGATGAGCAAGGTCAAGACTGGAATGGGCAAGAATTGAAACCTGAAAACGACTGCAATTCTGATGCTTTGGCACTCCTAGAAGCCATCCTGGGCTATTGA

Protein sequence

MSAMSYNGSNCIGLLMLNANSYNYPTAEFSLTSQHQSDGDPIGDNPEGEQTYHSYYGWLSSELDSTDLFDCQDPYGNQNGCRMENTELILLQNEDQVEDYNGDSRNLYYEFTWDCFQLWFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY
Homology
BLAST of CaUC04G074340.1 vs. NCBI nr
Match: KAA0047323.1 (hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 4.0e-62
Identity = 120/158 (75.95%), Postives = 133/158 (84.18%), Query Frame = 0

Query: 1   MSAMSYNGSNCIGLLMLNANSYNYPTAEFSLTSQHQSDGDPIGDNPEGEQTYHSYYGWLS 60
           MS M YNGS+ IGLLMLNAN YNY  AEF   SQHQSDGDPIGDNPE EQTYHS YGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANDYNYSIAEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWPS 60

Query: 61  SELDSTDL-FDCQDPYGNQNGCRMEN-TELILLQNEDQVEDYNGDSRNLYYEFTWDCFQL 120
           +E++ TDL F+C+ PYGNQNGC  E+ TELIL QNE+Q+EDYNGDSRNLYYEF+WDC + 
Sbjct: 61  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY 157
           WFG GE+EQGQ+ NGQEL PENDC SDALALLEAILGY
Sbjct: 121 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

BLAST of CaUC04G074340.1 vs. NCBI nr
Match: KGN54204.1 (hypothetical protein Csa_017990 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.7e-58
Identity = 117/158 (74.05%), Postives = 130/158 (82.28%), Query Frame = 0

Query: 1   MSAMSYNGSNCIGLLMLNANSYNYPTAEFSLTSQHQSDGDPIGDNPEGEQTYHSYYGWLS 60
           MS M YNGS+ IGLLMLNAN Y+ P  EF   SQHQSDGDPIGDNPE EQ YHS YGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIP--EFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSS 60

Query: 61  SELDSTDL-FDCQDPYGNQNGCRMEN-TELILLQNEDQVEDYNGDSRNLYYEFTWDCFQL 120
           +E++ TDL F+C+  YGNQNGC  E+ TELIL QNE+Q+EDYNGDSRNLYYEF+WDC + 
Sbjct: 61  NEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY 157
           WFG GEDEQGQ+ NGQEL PENDC SDALALLEAILGY
Sbjct: 121 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

BLAST of CaUC04G074340.1 vs. NCBI nr
Match: KAG6595286.1 (hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 8.8e-46
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 0

Query: 4   MSYNGSNCIGLLMLNANSYNYPTAEFS-----LTSQHQ-SDGDPIGDNPEGEQTYHSYYG 63
           M+ +GSN IGLLM NANSY+YP    S      T QHQ SDGDPI D+PEG++T  S + 
Sbjct: 1   MNCSGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFE 60

Query: 64  WLSSELDSTDL-FDCQDPYGNQNGCRMENTELILLQNEDQVEDYNGDSRNLYYEFTWDCF 123
              +ELDS+DL F+ QDPY NQ+GC MEN ELIL  NEDQ EDY GD RNLYYEF W CF
Sbjct: 61  NSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDWACF 120

Query: 124 QLWFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY 157
           + WFG GEDE  QDWNGQEL+ E DC+S+A+ALLE+ILGY
Sbjct: 121 RYWFGLGEDE--QDWNGQELRLEQDCSSEAVALLESILGY 158

BLAST of CaUC04G074340.1 vs. ExPASy TrEMBL
Match: A0A5A7TUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001440 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-62
Identity = 120/158 (75.95%), Postives = 133/158 (84.18%), Query Frame = 0

Query: 1   MSAMSYNGSNCIGLLMLNANSYNYPTAEFSLTSQHQSDGDPIGDNPEGEQTYHSYYGWLS 60
           MS M YNGS+ IGLLMLNAN YNY  AEF   SQHQSDGDPIGDNPE EQTYHS YGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANDYNYSIAEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWPS 60

Query: 61  SELDSTDL-FDCQDPYGNQNGCRMEN-TELILLQNEDQVEDYNGDSRNLYYEFTWDCFQL 120
           +E++ TDL F+C+ PYGNQNGC  E+ TELIL QNE+Q+EDYNGDSRNLYYEF+WDC + 
Sbjct: 61  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY 157
           WFG GE+EQGQ+ NGQEL PENDC SDALALLEAILGY
Sbjct: 121 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

BLAST of CaUC04G074340.1 vs. ExPASy TrEMBL
Match: A0A0A0KZF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 117/158 (74.05%), Postives = 130/158 (82.28%), Query Frame = 0

Query: 1   MSAMSYNGSNCIGLLMLNANSYNYPTAEFSLTSQHQSDGDPIGDNPEGEQTYHSYYGWLS 60
           MS M YNGS+ IGLLMLNAN Y+ P  EF   SQHQSDGDPIGDNPE EQ YHS YGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIP--EFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSS 60

Query: 61  SELDSTDL-FDCQDPYGNQNGCRMEN-TELILLQNEDQVEDYNGDSRNLYYEFTWDCFQL 120
           +E++ TDL F+C+  YGNQNGC  E+ TELIL QNE+Q+EDYNGDSRNLYYEF+WDC + 
Sbjct: 61  NEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGFGEDEQGQDWNGQELKPENDCNSDALALLEAILGY 157
           WFG GEDEQGQ+ NGQEL PENDC SDALALLEAILGY
Sbjct: 121 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047323.14.0e-6275.95hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa][more]
KGN54204.12.7e-5874.05hypothetical protein Csa_017990 [Cucumis sativus][more]
KAG6595286.18.8e-4663.75hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TUT51.9e-6275.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KZF21.3e-5874.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC04G074340CaUC04G074340gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC04G074340.1-exonCaUC04G074340.1-exon-Ciama_Chr04:23438972..23439442exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC04G074340.1-cdsCaUC04G074340.1-cds-Ciama_Chr04:23438972..23439442CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC04G074340.1CaUC04G074340.1-proteinpolypeptide