CaUC02G034910.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G034910.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protochlorophyllide reductase
Location	Ciama_Chr02: 13216431 .. 13216754 (+)
Sequence length	324
RNA-Seq Expression	CaUC02G034910.1
Synteny	CaUC02G034910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCAACCACCCCCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCCCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

mRNA sequence

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCAACCACCCCCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCCCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Coding sequence (CDS)

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCCGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCAACCACCCCCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCCCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Protein sequence

MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM

Homology

[Close]

BLAST of CaUC02G034910.1 vs. NCBI nr
Match: KAA0053319.1 (uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTNSHR+ADESMFTTTDQFP YAAA + +RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAAN-NRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of CaUC02G034910.1 vs. NCBI nr
Match: XP_011656875.1 (uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical protein Csa_005504 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAAN  +RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAAN--NRRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of CaUC02G034910.1 vs. NCBI nr
Match: XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 94/112 (83.93%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPH-RRPFS----AAIFSII 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA ANH H RRP +    AA+FSII
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHHRRRPAAHRTIAAVFSII 60

Query: 61  RAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           RAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  RAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of CaUC02G034910.1 vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAAN-HPHRRPFS----AAIFSII 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA AN H HRRP +    +A+FSII
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHHHRRPAAHRTFSAVFSII 60

Query: 61  RAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           RAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  RAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of CaUC02G034910.1 vs. NCBI nr
Match: XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncharacterized protein E5676_scaffold177G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA + +RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAAN-NRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL
Match: A0A5A7UIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001420 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTNSHR+ADESMFTTTDQFP YAAA + +RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAAN-NRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL
Match: A0A0A0KFS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAAN  +RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAAN--NRRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL
Match: A0A6J1FWB0 (uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC111448722 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 94/112 (83.93%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPH-RRPFS----AAIFSII 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA ANH H RRP +    AA+FSII
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHHRRRPAAHRTIAAVFSII 60

Query: 61  RAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           RAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  RAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL
Match: A0A6J1J5Y3 (uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAAN-HPHRRPFS----AAIFSII 60
           MWRLI+ALRPTLHNFTNSHRVADESMFTTT +FPIYA AN H HRRP +    +A+FSII
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHHHRRPAAHRTFSAVFSII 60

Query: 61  RAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           RAPFSILSCFAPPPVH SAD FWLS DHYFASTISETN LMVSDGMRYA+LM
Sbjct: 61  RAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL
Match: A0A5D3CJA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00520 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA + +RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAAN-NRRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of CaUC02G034910.1 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVAD++   ++          +  R  F++    I+R PFS
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV---IMRFPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCFA P V    D  W+SGD+    +ISE N LMVSD MRYAILM
Sbjct: 61  IISCFAVPRV-SGTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of CaUC02G034910.1 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAANHPHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVADES   +T     +   N  +          I++ P S
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGGNGSNG--------GIMKFPLS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCF+ P V R AD  W+SGD+     +SE N LMV DGMRYA+LM
Sbjct: 61  IMSCFSVPRVSR-ADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of CaUC02G034910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053319.1	1.1e-42	83.18	uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa]	[more]
XP_011656875.1	1.1e-42	82.24	uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical ...	[more]
XP_022944204.1	1.1e-42	83.93	uncharacterized protein LOC111448722 [Cucurbita moschata]	[more]
XP_022985817.1	2.4e-42	83.04	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_008455967.1	2.4e-42	82.24	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncha...	[more]

BLAST of CaUC02G034910.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G034910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIL8	5.2e-43	83.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KFS1	5.2e-43	82.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1	[more]
A0A6J1FWB0	5.2e-43	83.93	uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1J5Y3	1.2e-42	83.04	uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748...	[more]
A0A5D3CJA9	1.2e-42	82.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CaUC02G034910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	1.9e-13	42.99	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	3.2e-13	42.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC02G034910	CaUC02G034910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G034910.1-exon	CaUC02G034910.1-exon-Ciama_Chr02:13216431..13216754	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G034910.1-cds	CaUC02G034910.1-cds-Ciama_Chr02:13216431..13216754	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC02G034910.1	CaUC02G034910.1-protein	polypeptide