CaUC02G033940.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G033940.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr02: 10529380 .. 10530716 (+)
Sequence length	267
RNA-Seq Expression	CaUC02G033940.1
Synteny	CaUC02G033940.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGGTAGGGAAATCCTTTGGGATACCTAATCTCCTTGTTAGCTTTGATTTTATCCACCTTATTACTCCACGGTGGTGTATTTATGTTTCTTCTTCTCTGTTGTAAATGCAAGTGAAAAGAGCAAATAATACAAGAATAATATTTTTACTTCTCTGCCTCTTCTTCTCAAAAGACTCAATTTGGTATCAGAGCAGCTATGGCTGACACCCCTGTTAAACAAGAAATCTCCCGAACATGAAGTCATAAATATGGCAACTCCTTCTTCCTCACAGAAGAATGCTTCAACCAGAAACAATTCCACACCAACTATTGAACATTATCAGGTATGGTCTAGAACTTGCCTTGCTGGAAATCCTTCCTTCACAAATTTGTTGAATCAATTGACCTCCATCAAGTTGGATAGAGGAAATTTCTTGCTTTGGTAGAAGATTGTGCTCCCAATTCCAAGAAGCTACAAATTGGAGGGTCATCTCATGGGTAAGTCACCAGCCCCTAAGCACTTCATTATTATTCCTCCATGTAAAGAAGATCATACTGGACTGGTACTACCAAATCTAGAGTATGATATTTGGCTGGTTGCTGATCAACTGTTAGTTGGGTGGTTGTATAACTCAATGATGCCCGAAGTCACTGCTCAAGTTATGGGCTACGATGAAGCTAAGCTGCTGTGGGATGCCATCCAAGAGTACTTCGGTATTCAATCAAGATCCCAAGAGGATTATTATCGTCATATGATGCAACAGACAAGGAAAAGAATTATGAAAATGTAGGAATACTTGGCTGTCATGAAGAAATTCTATGATAATCTCTTGTAGGATAGATCTCCTATGGATTTTAGGAGCTTTATTTCACATGTTTTTGCAGGTCTTGATGAAGAATATAACCCCATTATTTGTGTCATTTGGAGCCAAGATCTCACTTGGAATAAGATTCAATATGAGCTTCTTTCTTATGAACAACGACATGAAAAACTCCAGGAGTTCAAGGGAAGTCTAACTTTAAACCAACCTACTATGAATTATGCTGCAGTAGACAAAAAGTAGTCAAATCCTTCACAAGCCAACTGTAGAAACAACAATAACAACAACAACAATAATACTAGATGAGGCAACAACAGAAATAGAGGCAGAAATCGATACTCTCCTTATCCTCAACAAAAAAAAACCCACTTGTCAGATTTGTGGGAAATATGGCTATGTTGCTGATGTGTGCTATCAGAGGTATCATAAGGAAGAAAATGAGAATGCAATCAATTCTTCATCAACAAATCAGAATACTACCAATCCCACTGCTCTTATGGGCTACCCTAACACTCTTCAAGACTTCTCCTAG

mRNA sequence

ATGAAAACAACAATAACAACAACAACAATAATACTAGATGAGGCAACAACAGAAATAGAGGCAGAAATCGATACTCTCCTTATCCTCAACAAAAAAAAACCCACTTGTCAGATTTGTGGGAAATATGGCTATGTTGCTGATGTGTGCTATCAGAGGTATCATAAGGAAGAAAATGAGAATGCAATCAATTCTTCATCAACAAATCAGAATACTACCAATCCCACTGCTCTTATGGGCTACCCTAACACTCTTCAAGACTTCTCCTAG

Coding sequence (CDS)

ATGAAAACAACAATAACAACAACAACAATAATACTAGATGAGGCAACAACAGAAATAGAGGCAGAAATCGATACTCTCCTTATCCTCAACAAAAAAAAACCCACTTGTCAGATTTGTGGGAAATATGGCTATGTTGCTGATGTGTGCTATCAGAGGTATCATAAGGAAGAAAATGAGAATGCAATCAATTCTTCATCAACAAATCAGAATACTACCAATCCCACTGCTCTTATGGGCTACCCTAACACTCTTCAAGACTTCTCCTAG

Protein sequence

MKTTITTTTIILDEATTEIEAEIDTLLILNKKKPTCQICGKYGYVADVCYQRYHKEENENAINSSSTNQNTTNPTALMGYPNTLQDFS

Homology

[Close]

BLAST of CaUC02G033940.1 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-04
Identity = 22/42 (52.38%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 30  NKKKPTCQICGKYGYVADVCYQRYHKEENENAINSSSTNQNT 72
           N  KP+CQ+CGKYG++A VCY+R+  +EN N ++SS+ N+N+
Sbjct: 306 NNSKPSCQLCGKYGHIAAVCYKRF--DENFNNLSSSNNNRNS 345

[Close]

BLAST of CaUC02G033940.1 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-04
Identity = 22/42 (52.38%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 30  NKKKPTCQICGKYGYVADVCYQRYHKEENENAINSSSTNQNT 72
           N  KP+CQ+CGKYG++A VCY+R+  +EN N ++SS+ N+N+
Sbjct: 306 NNSKPSCQLCGKYGHIAAVCYKRF--DENFNNLSSSNNNRNS 345

The following BLAST results are available for this feature:

BLAST of CaUC02G033940.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC02G033940.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC02G033940.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU77	5.1e-04	52.38	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTZ7	5.1e-04	52.38	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CaUC02G033940.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC02G033940	CaUC02G033940	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G033940.1-exon	CaUC02G033940.1-exon-Ciama_Chr02:10529380..10529383	exon
CaUC02G033940.1-exon	CaUC02G033940.1-exon-Ciama_Chr02:10530454..10530716	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G033940.1-cds	CaUC02G033940.1-cds-Ciama_Chr02:10529380..10529383	CDS
CaUC02G033940.1-cds	CaUC02G033940.1-cds-Ciama_Chr02:10530454..10530716	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC02G033940.1	CaUC02G033940.1-protein	polypeptide