CaUC01G005470.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G005470.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	CDGSH iron-sulfur domain-containing protein NEET
Location	Ciama_Chr01: 5788353 .. 5789798 (+)
Sequence length	676
RNA-Seq Expression	CaUC01G005470.1
Synteny	CaUC01G005470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGAAGTAATATGAATTAGGGTAAGGAAAAGGAAGGACGTGTCAAATGGAGGTCCACCGATTAGGGGGTGATTTGAATGGAACTTAAAAAAGGCGTATGCTCTCCACACATTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAAATGGCGTCCTGCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAACAACCCATCCTCCTCATCCTAATTTCAACCCCCGTCGTATGGTGGTTGTAAGAGCTGAAGCCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGGTTCCTTTTCTTTTCTTTCTCATTATTTCCCTTTTATTCTCTTTCTCACTAAGTTAATTAGAATTCAAATGGGGGAGGAATTAGAAATTTTACTTTCAATTTTTTTTTCTTTTAGGTTTAAATGTTATTTTTGTCACAATTTTAGTTCATTTTGGTGGTTCAACTTTCAAACATTAGTCATTTCGACCTCTTAAAAATGAGGTCAAAATGAAAATGAAGAGACAAAAAAATGTCATTTTTTGAAAGTAAAGGACCAAAGTAAACATTGTTGATGCAAAATTTGGGGCTTGGAAAAGGCACCTAGCTCGCCCTTACATGACCCTCACACGACACCAACTCTTATCGTAAGAGAACTAAATAATAGAGAATAAATCATAGGTTTTTAGATATCTTTAATGGAGACATTATGGTATATTTATAGGGTATTTGATACCAGATTTATCTTAAATCTATTAAGATTAGGATATGAGATTTTCCAATTTCATTTTATCTTATTTTATATTAGTTCATACTATCTTGATTTTTGCTTTATTTCATTAGGTTGAAATTCATTTCTCAACAAACATTTTGAAAATATAGGGATAAAAATTAATTAAAAAAAAAAAAAAAAACAAATAGAAACCAAAGTAGTATTCAAAACGTTGATTATTAATGTAATATAGGGACTAAATTGGAAAAATCTTTTTGTGCAAAAATTTACGATCCATAAAAGTAGAGCGTTTAAATTATTATTATTATTTGGTATATCTTATAAATGGGTCCGTTTTATATTTGTTTGGAGTACATTGAATAAATGAAATTGTTTGGGACTAAATTGGAAAACCTTAAAAAGATAAGGGAGTAAATTGAAAATTTGGGTGCAGATGTTGGAGGTCAGCCACATTTCCTGTTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAGTACACATTATATTCTCAATTTTTCTTTTTCTTTTTCCAACCTCTTTATCATTATCATTATCATTGCACTTGAGTTTCTAATGTACTTTCTCC

mRNA sequence

GTAGGAAGTAATATGAATTAGGGTAAGGAAAAGGAAGGACGTGTCAAATGGAGGTCCACCGATTAGGGGGTGATTTGAATGGAACTTAAAAAAGGCGTATGCTCTCCACACATTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAAATGGCGTCCTGCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAACAACCCATCCTCCTCATCCTAATTTCAACCCCCGTCGTATGGTGGTTGTAAGAGCTGAAGCCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGGACCAAAGTAAACATTGTTGATGCAAAATTTGGGGCTTGGAAAAGGCACCTAGCTCGCCCTTACATGACCCTCACACGACACCAACTCTTATCATGTTGGAGGTCAGCCACATTTCCTGTTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAGTACACATTATATTCTCAATTTTTCTTTTTCTTTTTCCAACCTCTTTATCATTATCATTATCATTGCACTTGAGTTTCTAATGTACTTTCTCC

Coding sequence (CDS)

ATGCTCTCCACACATTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAAATGGCGTCCTGCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAACAACCCATCCTCCTCATCCTAATTTCAACCCCCGTCGTATGGTGGTTGTAAGAGCTGAAGCCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGGACCAAAGTAAACATTGTTGATGCAAAATTTGGGGCTTGGAAAAGGCACCTAGCTCGCCCTTACATGACCCTCACACGACACCAACTCTTATCATGTTGGAGGTCAGCCACATTTCCTGTTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAG

Protein sequence

MLSTHSSPIISVLHHTNTSLQIIAQMASCIVPISAPSSLSITTHPPHPNFNPRRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK

Homology

[Close]

BLAST of CaUC01G005470.1 vs. NCBI nr
Match: XP_038876467.1 (CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-34
Identity = 89/139 (64.03%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 26  MASCIVPISAPSSLSITTHPPHPNF---NPRRMVVVRAEAGSGGEPINPAIRKTEDKVVD 85
           MAS IV IS PSSLSIT+ PPH NF     R  VVVRA+ GSGGEPINPAIRKTEDKVVD
Sbjct: 1   MAS-IVAISLPSSLSITSRPPHSNFIGSGRRSTVVVRAQ-GSGGEPINPAIRKTEDKVVD 60

Query: 86  SVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGS 145
           SVLI +LSKPLTPYCR                               CWRSATFP+CDGS
Sbjct: 61  SVLIAELSKPLTPYCR-------------------------------CWRSATFPLCDGS 106

Query: 146 HVKHNKATGDNVGPLLLKK 162
           HVKHNKATGDNVGPLLLK+
Sbjct: 121 HVKHNKATGDNVGPLLLKQ 106

[Close]

BLAST of CaUC01G005470.1 vs. NCBI nr
Match: XP_004143713.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 hypothetical protein Csa_000068 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-30
Identity = 84/140 (60.00%), Postives = 90/140 (64.29%), Query Frame = 0


Query: 26  MASCIVPISAP-SSLSITTHPPHPNFNP---RRMVVVRAEAGSGGEPINPAIRKTEDKVV 85
           MAS I+PIS+P SSLS   H    NFN    RR VVVRAE GS GE INPAIRK+EDKVV
Sbjct: 1   MAS-ILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60

Query: 86  DSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDG 145
           DSVL+ +LSKPLTPYCR                               CWRS TFP+CDG
Sbjct: 61  DSVLVPELSKPLTPYCR-------------------------------CWRSGTFPLCDG 108

Query: 146 SHVKHNKATGDNVGPLLLKK 162
           SHVKHNKATGDNVGPLLLKK
Sbjct: 121 SHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CaUC01G005470.1 vs. NCBI nr
Match: XP_022996357.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-28
Identity = 76/132 (57.58%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 35  APSSLSITTHPPHPNFN-----PRRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLIDQL 94
           A +S   TT PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSV++  L
Sbjct: 5   AATSALPTTRPPHGNFTVGGMPRRRMVVVRAE---GGEAINPAIRKSEDKVVDSVVVADL 64

Query: 95  SKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHNKA 154
           +KPLTPYCR                               CWRSATFP+CDGSHVKHNKA
Sbjct: 65  AKPLTPYCR-------------------------------CWRSATFPLCDGSHVKHNKA 102

Query: 155 TGDNVGPLLLKK 162
           TGDNVGPLLLKK
Sbjct: 125 TGDNVGPLLLKK 102

[Close]

BLAST of CaUC01G005470.1 vs. NCBI nr
Match: XP_023534172.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 8.6e-28
Identity = 76/134 (56.72%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 34  SAPSSLSI-TTHPPHPNFN-----PRRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLID 93
           S P++ ++ TT PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSV++ 
Sbjct: 3   SLPATSALPTTRPPHVNFTLGGMPRRRMVVVRAE---GGEAINPAIRKSEDKVVDSVVVA 62

Query: 94  QLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHN 153
            L+KPLTPYCR                               CWRSATFP+CDGSHVKHN
Sbjct: 63  DLAKPLTPYCR-------------------------------CWRSATFPLCDGSHVKHN 102

Query: 154 KATGDNVGPLLLKK 162
           KATGDNVGPLLLKK
Sbjct: 123 KATGDNVGPLLLKK 102

[Close]

BLAST of CaUC01G005470.1 vs. NCBI nr
Match: KAG6605678.1 (CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 9.5e-27
Identity = 75/135 (55.56%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 34  SAPSSLSI-TTHPPHPNFN----PRR--MVVVRAEAGSGGEPINPAIRKTEDKVVDSVLI 93
           S P++ ++ TT PPH NF     PRR  +VVVRAE   GG+ INPAIRK+EDKVVDSV++
Sbjct: 3   SLPATSALPTTRPPHSNFTVGGMPRRRMVVVVRAE---GGQAINPAIRKSEDKVVDSVVV 62

Query: 94  DQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKH 153
             L+KPLTPYCR                               CWRSATFP+CDGSHVKH
Sbjct: 63  ADLAKPLTPYCR-------------------------------CWRSATFPLCDGSHVKH 103

Query: 154 NKATGDNVGPLLLKK 162
           NKATGDNVGPLLLKK
Sbjct: 123 NKATGDNVGPLLLKK 103

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot
Match: Q9FLI7 (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-25
Identity = 61/109 (55.96%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 53  RRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWK 112
           +RMVVVRAE G G   INP IRK EDKVVDSV++ +LSK +TPYCR              
Sbjct: 33  QRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCR-------------- 92

Query: 113 RHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
                            CWRS TFP+CDGSHVKHNKA GDNVGPLLLKK
Sbjct: 93  -----------------CWRSGTFPLCDGSHVKHNKANGDNVGPLLLKK 107

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot
Match: Q7T326 (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-12
Identity = 39/93 (41.94%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 69  INPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLL 128
           IN  I+K   KVV+ + I+ L  P   YCR                              
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCR------------------------------ 130

Query: 129 SCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
            CWRS TFPVCD SH+KHN+ TGDNVGPL+LKK
Sbjct: 131 -CWRSKTFPVCDKSHIKHNELTGDNVGPLILKK 132

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot
Match: C1BI29 (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN=cisd2a PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 38/93 (40.86%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 69  INPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLL 128
           IN  I+K   KVV+ + I+ L++    YCR                              
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCR------------------------------ 130

Query: 129 SCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
            CWRS TFPVCD SH+KHN+ TGDNVGPL+LKK
Sbjct: 131 -CWRSKTFPVCDKSHIKHNELTGDNVGPLILKK 132

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot
Match: Q6PCF8 (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 69  INPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLL 128
           IN  I+K   KVV+ + I+ L      YCR                              
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCR------------------------------ 130

Query: 129 SCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
            CWRS TFPVCDGSH KHN+ TGDNVGPL+LKK
Sbjct: 131 -CWRSKTFPVCDGSHNKHNELTGDNVGPLILKK 132

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot
Match: Q6AZG1 (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 69  INPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLL 128
           IN  I+K   KVV+ + I+ L      YCR                              
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCR------------------------------ 130

Query: 129 SCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
            CWRS TFPVCDGSH KHN+ TGDNVGPL+LKK
Sbjct: 131 -CWRSKTFPVCDGSHNKHNELTGDNVGPLILKK 132

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL
Match: A0A0A0KL88 (ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 84/140 (60.00%), Postives = 90/140 (64.29%), Query Frame = 0


Query: 26  MASCIVPISAP-SSLSITTHPPHPNFNP---RRMVVVRAEAGSGGEPINPAIRKTEDKVV 85
           MAS I+PIS+P SSLS   H    NFN    RR VVVRAE GS GE INPAIRK+EDKVV
Sbjct: 1   MAS-ILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60

Query: 86  DSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDG 145
           DSVL+ +LSKPLTPYCR                               CWRS TFP+CDG
Sbjct: 61  DSVLVPELSKPLTPYCR-------------------------------CWRSGTFPLCDG 108

Query: 146 SHVKHNKATGDNVGPLLLKK 162
           SHVKHNKATGDNVGPLLLKK
Sbjct: 121 SHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL
Match: A0A6J1K1P5 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=LOC111491613 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 76/132 (57.58%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 35  APSSLSITTHPPHPNFN-----PRRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLIDQL 94
           A +S   TT PPH NF       RRMVVVRAE   GGE INPAIRK+EDKVVDSV++  L
Sbjct: 5   AATSALPTTRPPHGNFTVGGMPRRRMVVVRAE---GGEAINPAIRKSEDKVVDSVVVADL 64

Query: 95  SKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHNKA 154
           +KPLTPYCR                               CWRSATFP+CDGSHVKHNKA
Sbjct: 65  AKPLTPYCR-------------------------------CWRSATFPLCDGSHVKHNKA 102

Query: 155 TGDNVGPLLLKK 162
           TGDNVGPLLLKK
Sbjct: 125 TGDNVGPLLLKK 102

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL
Match: A0A6J1H2X5 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita moschata OX=3662 GN=LOC111459616 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 75/135 (55.56%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 34  SAPSSLSI-TTHPPHPNFN----PRR--MVVVRAEAGSGGEPINPAIRKTEDKVVDSVLI 93
           S P++ ++ TT PPH NF     PRR  +VVVRAE   GG+ INPAIRK+EDKVVDSV++
Sbjct: 3   SLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAE---GGQAINPAIRKSEDKVVDSVVV 62

Query: 94  DQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKH 153
             L+KPLTPYCR                               CWRSATFP+CDGSHVKH
Sbjct: 63  ADLAKPLTPYCR-------------------------------CWRSATFPLCDGSHVKH 103

Query: 154 NKATGDNVGPLLLKK 162
           NKATGDNVGPLLLKK
Sbjct: 123 NKATGDNVGPLLLKK 103

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL
Match: A0A6J1E4B9 (CDGSH iron-sulfur domain-containing protein NEET OS=Momordica charantia OX=3673 GN=LOC111025950 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 76/145 (52.41%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 26  MASCIVPISAPSSLSITTHPPHPNF---------NPRRMVVVRAEAGSGGEPINPAIRKT 85
           MAS IV I+   +   +TH  H N            RR+ VVRAEAG+  EPINPAIRK+
Sbjct: 1   MASIIVTIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGA--EPINPAIRKS 60

Query: 86  EDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATF 145
           EDKVVDSVL+  L+KPLT YCR                               CWRSATF
Sbjct: 61  EDKVVDSVLLSDLAKPLTAYCR-------------------------------CWRSATF 112

Query: 146 PVCDGSHVKHNKATGDNVGPLLLKK 162
           P+CDGSHVKHNKATGDNVGPLLLKK
Sbjct: 121 PLCDGSHVKHNKATGDNVGPLLLKK 112

[Close]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL
Match: A0A3L6QNG8 (CDGSH iron-sulfur domain-containing protein NEET OS=Panicum miliaceum OX=4540 GN=C2845_PM04G24140 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 74/135 (54.81%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 27  ASCIVPISAPSSLSITTHPPHPNFNPRRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLI 86
           A+C  P++AP S       P P    R MV VRAEAG+GG  INPAIRK EDKVVD+VL 
Sbjct: 8   AACRFPVAAPPS----AQAPRPR---RGMVAVRAEAGAGG-GINPAIRKEEDKVVDTVLT 67

Query: 87  DQLSKPLTPYCRTKVNIVDAKFGAWKRHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKH 146
            +L+KPLT YCR         +G            LT   L  CWRS TFP+CDG+HVKH
Sbjct: 68  GELAKPLTAYCR---------YG----------QLLTGFPLSLCWRSGTFPLCDGTHVKH 115

Query: 147 NKATGDNVGPLLLKK 162
           NKATGDNVGPLL+KK
Sbjct: 128 NKATGDNVGPLLVKK 115

[Close]

BLAST of CaUC01G005470.1 vs. TAIR 10
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding )

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26
Identity = 61/109 (55.96%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 53  RRMVVVRAEAGSGGEPINPAIRKTEDKVVDSVLIDQLSKPLTPYCRTKVNIVDAKFGAWK 112
           +RMVVVRAE G G   INP IRK EDKVVDSV++ +LSK +TPYCR              
Sbjct: 33  QRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCR-------------- 92

Query: 113 RHLARPYMTLTRHQLLSCWRSATFPVCDGSHVKHNKATGDNVGPLLLKK 162
                            CWRS TFP+CDGSHVKHNKA GDNVGPLLLKK
Sbjct: 93  -----------------CWRSGTFPLCDGSHVKHNKANGDNVGPLLLKK 107

The following BLAST results are available for this feature:

BLAST of CaUC01G005470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876467.1	8.0e-34	64.03	CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]	[more]
XP_004143713.1	3.2e-30	60.00	CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 h...	[more]
XP_022996357.1	6.6e-28	57.58	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]	[more]
XP_023534172.1	8.6e-28	56.72	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]	[more]
KAG6605678.1	9.5e-27	55.56	CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperm...	[more]

BLAST of CaUC01G005470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLI7	5.4e-25	55.96	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702...	[more]
Q7T326	5.3e-12	41.94	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE...	[more]
C1BI29	1.2e-11	40.86	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN...	[more]
Q6PCF8	1.2e-11	41.94	CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd...	[more]
Q6AZG1	1.2e-11	41.94	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd...	[more]

BLAST of CaUC01G005470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL88	1.5e-30	60.00	ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 P...	[more]
A0A6J1K1P5	3.2e-28	57.58	CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1H2X5	6.0e-27	55.56	CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1E4B9	1.0e-26	52.41	CDGSH iron-sulfur domain-containing protein NEET OS=Momordica charantia OX=3673 ...	[more]
A0A3L6QNG8	3.0e-26	54.81	CDGSH iron-sulfur domain-containing protein NEET OS=Panicum miliaceum OX=4540 GN...	[more]

BLAST of CaUC01G005470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51720.1	3.8e-26	55.96	2 iron, 2 sulfur cluster binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron-binding zinc finger, CDGSH type	SMART	SM00704	znf_cdgsh	coord: 112..149 e-value: 0.0084 score: 20.1
IPR042216	MitoNEET, CDGSH iron-sulfur domain	GENE3D	3.40.5.90		coord: 129..161 e-value: 3.5E-17 score: 63.6
None	No IPR available	PANTHER	PTHR13680:SF5	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 130..161 coord: 23..98
IPR045131	CDGSH iron-sulfur domain-containing protein 1/2	PANTHER	PTHR13680	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 130..161 coord: 23..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC01G005470	CaUC01G005470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC01G005470.1-exon	CaUC01G005470.1-exon-Ciama_Chr01:5788353..5788743	exon
CaUC01G005470.1-exon	CaUC01G005470.1-exon-Ciama_Chr01:5788995..5789087	exon
CaUC01G005470.1-exon	CaUC01G005470.1-exon-Ciama_Chr01:5789607..5789798	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC01G005470.1-five_prime_utr	CaUC01G005470.1-five_prime_utr-Ciama_Chr01:5788353..5788450	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC01G005470.1-cds	CaUC01G005470.1-cds-Ciama_Chr01:5788451..5788743	CDS
CaUC01G005470.1-cds	CaUC01G005470.1-cds-Ciama_Chr01:5788995..5789087	CDS
CaUC01G005470.1-cds	CaUC01G005470.1-cds-Ciama_Chr01:5789607..5789706	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC01G005470.1-three_prime_utr	CaUC01G005470.1-three_prime_utr-Ciama_Chr01:5789707..5789798	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC01G005470.1	CaUC01G005470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010506	regulation of autophagy
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding