CSPI07G18380.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G18380.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Location	Chr7: 16436843 .. 16439807 (-)
Sequence length	909
RNA-Seq Expression	CSPI07G18380.2
Synteny	CSPI07G18380.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGTTTTGCATTGGTTTCCTTTATCCAGAGCCTGAAGAATTGTGTTTTGATTGGAACTATTAGCTTTATAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTACCTCCAAGCTTGCTTAATTTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCATAGATAAGGTTCGTGTATTTTTTGTTTGTAAGCTTGTTTATTAACCTTCTTCAATTTTACCATGTGCCTTGGGATCAACACTTTTACTGAGATGAGCTTTGTCATGTAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTATTCTTGCATTTATCTTTAAAGATTGAACCTTTACATTGAAGTTTCTTTGTTACTTATTGTCAGTGCAGTGCTTATGTATGTATGATATAATTTTGGTAGATCAGAAAGGGTCATGGATTTAATAAAGAACTTAGAATGAATGTGTTCAATCCACGGTGGTCACCTACCTAGTATGTAATATATTACAAGTTTCTTGACATCTAAATAGTTTTTCCTCGAAATTAGTCGAGAGACATGTAGGCTAATTTAGACACTCGTGAACATCCAAAATCTATTTGCATATTTGGTATGTAGCATGTAAGGTATACTTTAATTATCAAGTACAACAGGAAAATGCTTGTGTGCTTCAACATGTAAAGTCGAAATCACATAATCAGTAAACTTTGGTCTCTTCTTTATCCATCTATCTTATGGACTATTTGTCCTTTTACTATTCTTGTCATTTAAATCATAGATTTTTGTCAAAACTACATCGGGATACTTATTCATTGGAAATATGATGACCTGAGTTTTATGTGCGAATATTTTGGCAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAAGTATGTAATATCTTTTTTTTTTTAACCTCCTTAAAGAATGGATATTTCTCTGTAATGATTTTTTTTTTTTTCTTTTGATTTGAATGTCTTATTCTAACATTTTAAATCTTGTCGCATTTTTCTTCATATTAAGTTTACATTTAAAATTAGTCCCTTTGTTTTAAGTCTTTTGAGGCGGTTGGTTCATTAGTGATTAGCAAGAGCTTTGGTGTTGATTTCCAAAATGAGTTGTTTTGCTGATTGATTCAACGGTCTAGATCTATATTCTCAATTCTTGGCAATGTTAGAAATGCTGGTGGTTAACTGTACAGAAAGGGTCATGGTTAACTGTACAGAAAGGAACAAGTATTTTGTTATGTTTTCATGTTGATGATTGATAACGTGCTTGGAAATTTGGTTTGGGTTCCTGTCAGCTTGGAGATTTAGAATTGGGTAAATTCTTTTGAAGTCTTTAGGAGTTACCTTAAACTTCTTGTTCTTGCTTTATGAGCGCAACATATGATAAATTTGGAATGGACAATGATGATGATGGATGTACGCTAAATTTGCAGTATCACTTGGATTTTTCGAGGATATTTATGTTCCGGTTGAGCTTATGCCCTCTGGATCTGAATTCACACCAGATGAAAATAATGGGTAATTCCCCTGTGCAACTTACAGCCACTAACTAAAAATATAAATGGTGTTTCTATTGAACTATAATTTCTATTGTTGATATATCTAAAATATTCTTTTTGCAACAATTGCAGTGGAAGATGCAGATGGGTGTGGATCTACAATGAAGTACCGTTCGACATATATGAATCTGATGAGGTTTGTCAATTATGATAAGCTTAAATCCAGTGTTAGTCCTAAACTTTCATACTTATTTCATTTAGGTTCTTAAACTGTGAAATGATTTGTTTTTAACTTTGCAAAAGACCTACTCAATTTCTTTTTGAACACTTAGTGGTGTGGGAATCTAAATACAATAAGCACAACATGAAGGAAAAAGTTTATGATGTATACTGTTGTGCAGAGATAATGTTGCAGAACAAACGCTCTATTTTAGGTGGGAGTATCCATTTTGGACACGCTTTAGACCGTGTCCTATTTTTATATATTTATTCGTAATTTCTGACATGTGGAATTATATGTTAACAAAACAGAAGGAAAGCCCATATTTTGAACCAAAGATTTAAATAAACAAAGTTTTTTTAAAAAAATTGTCTCCTCAACGTATCTTGTATCCTAGATATTTCGAAATTAACATATTGTTGTGGTGTTTCATATCTGTGTCTAAGAAGATTGTGTCTATGCTTGTTAGGTTCCATAGAGTACGCATTTTGGAGAATTTTGGAGATGGTGCATATTCTTAGTTTTGGTTTTCTGAAATGGCAGATAAAATTTAAAGTACACAGCATAGAGTACCCTGCAATTTTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAGTATTAATGTAAAACCATTCGCTCCCATGGTTATTACTGTATGTCACTCACTCTCAACTTCAACCATTTCCTTTACTTTATCTAATGTGTTTGTAGCATTAGTCTAAGGAAGACTGATTTGTAGTAGAGTCAGTGTAAATTCAAAAGCAATATTATGTTCATTCCATTGCATGTCAACTATGTTGTTAATAAGGTTTTTTTCCCCCCCTTTTTTGGGTTGGTGTAGGCATCACTTGACCAAGATGGATTGGGTCCTGTTTCGTGGTGGGATGGGTCAGGAGAGGCCGAGGCCGAAGACGAGGACGAGGTCGAAGAAGATTCCTAAGATCAGTATCTTGTTCTGTTTTTGTGCAAATTGGTATTCGCTTATTTATAACTTTGTATTATATGTCATTTATCATTTGGCACAAGCAATAATAGAGCTTGTAACGAACGATTAAGCAAAAAGTTAAGAAAAAAGGTCCATTTTCA

mRNA sequence

TGATGTTTTGCATTGGTTTCCTTTATCCAGAGCCTGAAGAATTGTGTTTTGATTGGAACTATTAGCTTTATAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTACCTCCAAGCTTGCTTAATTTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCATAGATAAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGATATTTATGTTCCGGTTGAGCTTATGCCCTCTGGATCTGAATTCACACCAGATGAAAATAATGGTGGAAGATGCAGATGGGTGTGGATCTACAATGAAGTACCGTTCGACATATATGAATCTGATGAGATAAAATTTAAAGTACACAGCATAGAGTACCCTGCAATTTTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAGTATTAATGTAAAACCATTCGCTCCCATGGTTATTACTGCATCACTTGACCAAGATGGATTGGGTCCTGTTTCGTGGTGGGATGGGTCAGGAGAGGCCGAGGCCGAAGACGAGGACGAGGTCGAAGAAGATTCCTAAGATCAGTATCTTGTTCTGTTTTTGTGCAAATTGGTATTCGCTTATTTATAACTTTGTATTATATGTCATTTATCATTTGGCACAAGCAATAATAGAGCTTGTAACGAACGATTAAGCAAAAAGTTAAGAAAAAAGGTCCATTTTCA

Coding sequence (CDS)

ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTACCTCCAAGCTTGCTTAATTTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCATAGATAAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGATATTTATGTTCCGGTTGAGCTTATGCCCTCTGGATCTGAATTCACACCAGATGAAAATAATGGTGGAAGATGCAGATGGGTGTGGATCTACAATGAAGTACCGTTCGACATATATGAATCTGATGAGATAAAATTTAAAGTACACAGCATAGAGTACCCTGCAATTTTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAGTATTAATGTAAAACCATTCGCTCCCATGGTTATTACTGCATCACTTGACCAAGATGGATTGGGTCCTGTTTCGTGGTGGGATGGGTCAGGAGAGGCCGAGGCCGAAGACGAGGACGAGGTCGAAGAAGATTCCTAA

Protein sequence

MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEFTPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPKESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS*

Homology

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BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot
Match: Q9Y535 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 75/212 (35.38%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   ++F
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGRCRWVWIY--NEVPFDIY--ESDEIKFKVHSIEYPAILVEQPKESNSKFPME 180
              E       WVW Y   E   D+Y    +EI+F+V    +       P  +++    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 180

Query: 181 EKPKESINVKPFAPMVITASLDQDGLGPVSWW 209
           E PK+       AP  +  S+ + GLG +SWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

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BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot
Match: Q9D2C6 (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-31
Identity = 75/212 (35.38%), Postives = 114/212 (53.77%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   ++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGRCRWVWIY--NEVPFDIY--ESDEIKFKVHSIEYPAILVEQPKESNSKFPME 180
              E       WVW Y   E   D+Y    +EI+F+V    +       P  + +    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EKPKESINVKPFAPMVITASLDQDGLGPVSWW 209
           E PK+       AP  +  S+ + GLG +SWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

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BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot
Match: Q2T9X1 (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-31
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   ++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGRCRWVWIY--NEVPFDIYE--SDEIKFKVHSIEYPAILVEQPKESNSKFPME 180
              E       WVW Y   E   D+Y    +E++F+V    +       P  + +    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EKPKESINVKPFAPMVITASLDQDGLGPVSWWDGS 212
           E PK+       AP  +  S+ + GLG +SWW  S
Sbjct: 181 ELPKKE------APYTLMGSISEPGLGLLSWWTSS 204

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BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot
Match: O94285 (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-30
Identity = 73/216 (33.80%), Postives = 118/216 (54.63%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
             DG++   VVF LI+FRPF GEV++GK++  +E G+R+++ FF+DI++P +++     F
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120

Query: 121 TPDENNGGRCRWVWIY--------NEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSK 180
            PDE       WVW           E+ FDI   +EI+F++ S ++  I  ++ K + + 
Sbjct: 121 RPDER-----AWVWKIEGEDGSEGTELYFDI--DEEIRFQIESEDFVDISPKRNKNATAI 180

Query: 181 FPMEEKPKESINVKPFAPMVITASLDQDGLGPVSWW 209
              E        ++  +P  + AS  +DGLG  +WW
Sbjct: 181 TGTEA-------LESVSPYTLIASCSRDGLGIPAWW 202

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BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot
Match: P35718 (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-29
Identity = 71/220 (32.27%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LS+I   +R+PP   +   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRIS-LGFFEDIYVPVELMPSGSE 120
           P DG++   V F  +VF+PF GE++ G + +    G+++S LG F+DI++P  ++  G  
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120

Query: 121 FTPDENNGGRCRWVWIYNE---VPFDIYESDEIKFKVHSIEYPAILVEQPKE------SN 180
           +TP+E+      W+W  +E   + FD+  +++I+F++    +  +  + PKE      + 
Sbjct: 121 YTPEES-----AWIWPMDEETKLYFDV--NEKIRFRIEREVFVDVKPKSPKERELEERAQ 180

Query: 181 SKFPMEEKPKES-INVKPFAPMVITASLDQDGLGPVSWWD 210
            +  +E K +E+  N KP A   +  S   DG+G VSWW+
Sbjct: 181 LENEIEGKNEETPQNEKPPA-YALLGSCQTDGMGLVSWWE 212

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BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL
Match: A0A0A0K846 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 8.0e-126
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
           TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 226

[Close]

BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.0e-122
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
           TPDENNGGR RWVWIYNEVPFDIYESDEIKFK+HSIEYPAILVEQPKESNSKFPMEEKPK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA  EDEVEEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA--EDEVEEDS 224

[Close]

BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL
Match: A0A1S3CEN6 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500005 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.0e-122
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
           TPDENNGGR RWVWIYNEVPFDIYESDEIKFK+HSIEYPAILVEQPKESNSKFPMEEKPK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA  EDEVEEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA--EDEVEEDS 224

[Close]

BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.3e-101
Identity = 181/227 (79.74%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILV-EQPKESNSKFPMEEKP 180
            PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSI+YPAI V +QP ESNSKF MEE+P
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 181 KESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           KE++NVKPFAPMV+TA++D DGLGPVSWWDGSG+A+A+ E E EEDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL
Match: A0A6J1JVU8 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC111488343 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.4e-100
Identity = 182/229 (79.48%), Postives = 206/229 (89.96%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILV-EQPKESNSKFPMEEKP 180
            PD  N G+ RWVW Y+  P+DIYE+DEIKF++HSI+YP I V +QP ESNSKF MEE+P
Sbjct: 121 KPDPKNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTIPVDQQPNESNSKFQMEEQP 180

Query: 181 KESINVKPFAPMVITASLDQDGLGPVSWWDGSG--EAEAEDEDEVEEDS 227
           KE++NVKPFAPMV+TA++D DGLGPVSWWDGSG  +AEAE E E EEDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEAEAEAEEDS 229

[Close]

BLAST of CSPI07G18380.2 vs. NCBI nr
Match: XP_004135978.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucumis sativus] >KGN45039.1 hypothetical protein Csa_015520 [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 1.6e-125
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
           TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 226

[Close]

BLAST of CSPI07G18380.2 vs. NCBI nr
Match: XP_008461408.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo] >KAA0058536.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo var. makuwa] >TYJ96892.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 446.4 bits (1147), Expect = 1.4e-121
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
           TPDENNGGR RWVWIYNEVPFDIYESDEIKFK+HSIEYPAILVEQPKESNSKFPMEEKPK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA  EDEVEEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEA--EDEVEEDS 224

[Close]

BLAST of CSPI07G18380.2 vs. NCBI nr
Match: XP_022954042.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata])

HSP 1 Score: 378.3 bits (970), Expect = 4.8e-101
Identity = 181/227 (79.74%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILV-EQPKESNSKFPMEEKP 180
            PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSI+YPAI V +QP ESNSKF MEE+P
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 181 KESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           KE++NVKPFAPMV+TA++D DGLGPVSWWDGSG+A+A+ E E EEDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of CSPI07G18380.2 vs. NCBI nr
Match: XP_038897233.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897234.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897235.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897236.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 183/225 (81.33%), Postives = 204/225 (90.67%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPP+LL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPNLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRPF GEVIIGKV+ESN  GLRISLGFFEDI VPVEL+PSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFVGEVIIGKVKESNAKGLRISLGFFEDINVPVELLPSGSKF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
            PD NNGG+ RWVW Y +VP DIYE+DEI+FK+HSI+YPAI VEQPKE +SKF MEE+P+
Sbjct: 121 EPDLNNGGKLRWVWEYQDVPCDIYETDEIRFKIHSIDYPAIPVEQPKERDSKFLMEEQPR 180

Query: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSG----EAEAEDEDE 222
           E+INVK FAPM+ITA++D DGLGP+SWW+G G    E EAEDEDE
Sbjct: 181 ENINVKAFAPMLITATIDHDGLGPISWWEGGGDVEDEVEAEDEDE 225

[Close]

BLAST of CSPI07G18380.2 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.6 bits (963), Expect = 3.1e-100
Identity = 181/227 (79.74%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILV-EQPKESNSKFPMEEKP 180
            PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSI+YPAI V +QP ESNSKF MEE+P
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

Query: 181 KESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 227
           KE++NVKPFAPMV+TA++D DGLGPVSWWDGSG+A+A  + E EEDS
Sbjct: 181 KENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADA--DAEAEEDS 225

[Close]

BLAST of CSPI07G18380.2 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 241.9 bits (616), Expect = 5.0e-64
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LLNLP+ DAIK  L+ +F+DKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           P DGAATYKV   ++VFRPF GEVI  K +ES+ NGLR++LGFF+DIYVP  LMP  +  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESD--EIKFKVHSIEYPAILVEQPKESNSKFPMEEK 180
            PD  N  +  WVW Y E   D    D  +IKF+V SI YP++  E+ +++         
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA--------- 180

Query: 181 PKESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAED 219
                  KPFAPMV+T ++D DGLGPVSWWD   + + E+
Sbjct: 181 -------KPFAPMVVTGNMDDDGLGPVSWWDSYEQVDQEE 204

[Close]

BLAST of CSPI07G18380.2 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.6e-56
Identity = 105/198 (53.03%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LLNLP+ DAIK  L+ +F+DKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
           P DGAATYKV   ++VFRPF GEVI  K +ES+ NGLR++LGFF+DIYVP  LMP  +  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 TPDENNGGRCRWVWIYNEVPFDIYESD--EIKFKVHSIEYPAILVEQPKESNSKFPMEEK 180
            PD  N  +  WVW Y E   D    D  +IKF+V SI YP++  E+ +++         
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA--------- 180

Query: 181 PKESINVKPFAPMVITAS 197
                  KPFAPMV+T S
Sbjct: 181 -------KPFAPMVVTVS 182

[Close]

BLAST of CSPI07G18380.2 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 48.5 bits (114), Expect = 8.1e-06
Identity = 30/120 (25.00%), Postives = 53/120 (44.17%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
           MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
              G  T+ V +  +VFRPF GE++   V   N+ G     G  + I+V   L+P   EF
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEF 119

[Close]

BLAST of CSPI07G18380.2 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 27/96 (28.12%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 30  LEKLFIDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKV 89
           LE     K    LG  ++V  +  +  G I    G   + V+F+ + F+ F GE+I G V
Sbjct: 34  LEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVV 93

Query: 90  QESNENGLRISLGFFEDIYVPVELMPSGSEFTPDEN 126
            +  ++G+ +  G  E++Y+    MP   ++ P EN
Sbjct: 94  HKVLKHGVFMRCGPIENVYLSYTKMPD-YKYIPGEN 128

The following BLAST results are available for this feature:

BLAST of CSPI07G18380.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y535	1.9e-31	35.38	DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H P...	[more]
Q9D2C6	2.4e-31	35.38	DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h ...	[more]
Q2T9X1	7.1e-31	34.42	DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=...	[more]
O94285	3.5e-30	33.80	DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai...	[more]
P35718	1.0e-29	32.27	DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CSPI07G18380.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K846	8.0e-126	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1	[more]
A0A5A7UWI5	7.0e-122	98.23	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3CEN6	7.0e-122	98.23	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1GPX5	2.3e-101	79.74	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JVU8	4.4e-100	79.48	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CSPI07G18380.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135978.1	1.6e-125	100.00	DNA-directed RNA polymerase III subunit RPC8 [Cucumis sativus] >KGN45039.1 hypot...	[more]
XP_008461408.1	1.4e-121	98.23	PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo...	[more]
XP_022954042.1	4.8e-101	79.74	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043....	[more]
XP_038897233.1	1.4e-100	81.33	DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_...	[more]
XP_023547503.1	3.1e-100	79.74	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02...	[more]

BLAST of CSPI07G18380.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06790.1	5.0e-64	52.73	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.2	6.6e-56	53.03	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT5G59180.1	8.1e-06	25.00	DNA-directed RNA polymerase II	[more]
AT4G14660.1	3.1e-05	28.13	RNA polymerase Rpb7-like, N-terminal domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013238	RNA polymerase III, subunit Rpc25	PFAM	PF08292	RNA_pol_Rbc25	coord: 83..208 e-value: 1.6E-23 score: 83.3
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 6.9E-11 score: 42.3
None	No IPR available	GENE3D	2.40.50.140		coord: 81..209 e-value: 8.2E-32 score: 112.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..226
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 1..220
None	No IPR available	CDD	cd04330	RNAP_III_Rpc25_N	coord: 2..80 e-value: 1.15255E-36 score: 121.932
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..80 e-value: 1.3E-25 score: 91.5
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..220
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 79..204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G18380	CSPI07G18380	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G18380.2.utr3p1	CSPI07G18380.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G18380.2.cds7	CSPI07G18380.2.cds7	CDS
CSPI07G18380.2.cds6	CSPI07G18380.2.cds6	CDS
CSPI07G18380.2.cds5	CSPI07G18380.2.cds5	CDS
CSPI07G18380.2.cds4	CSPI07G18380.2.cds4	CDS
CSPI07G18380.2.cds3	CSPI07G18380.2.cds3	CDS
CSPI07G18380.2.cds2	CSPI07G18380.2.cds2	CDS
CSPI07G18380.2.cds1	CSPI07G18380.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G18380.2.utr5p1	CSPI07G18380.2.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G18380.2	CSPI07G18380.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity