CSPI07G12750.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12750.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Extensin like
Location	Chr7: 11031455 .. 11032183 (-)
Sequence length	357
RNA-Seq Expression	CSPI07G12750.1
Synteny	CSPI07G12750.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTCCTGTAATGCTATCTCTTGTTATTGCAGTTTTGGTGGTGGCTCTAAGCCTATCGTATACAACAACTGCTCAAGCCCACCGGGATTCCTACTCTTCAACACTTACTTTCAACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCACGACCATGATCACGATCATGATCACGATCACGATCACGATCATCACCATTACAAGTCTCCACCCCCACCTCCATACAAAAGGAAATCCCCCCCTCCACCACCACCAAAGAGAGACGAATATCTCTCACCTCCACCACCTCCACCACCAAAAAAGTCTCCTCCTCCACCGCCAAAAAAGTCTCCTCCACCACCGCCAAAAAAGTCTCCACCACCACCGCCAAAAAAGCAAGATAACAAGTCACCACCTCCACCGCCACCAAAGAAAGACGAACATGAGTACTCCTCTCCTCCACCGCCACCAAAGAAAGACGAGCATGAGTACTCCTCTCCTCCACCACCACCGCCAAAGAAGCATAAGGACAAGTCAGCCCTCCACCACGATCCCCTCACGATTAATTAG

mRNA sequence

ATGGGTCCTCCTTCTCCACCCCCACCTCCATACAAAAGGAAATCCCCCCCTCCACCACCACCAAAGAGAGACGAATATCTCTCACCTCCACCACCTCCACCACCAAAAAAGTCTCCTCCTCCACCGCCAAAAAAGTCTCCTCCACCACCGCCAAAAAAGTCTCCACCACCACCGCCAAAAAAGCAAGATAACAAGTCACCACCTCCACCGCCACCAAAGAAAGACGAACATGAGTACTCCTCTCCTCCACCGCCACCAAAGAAAGACGAGCATGAGTACTCCTCTCCTCCACCACCACCGCCAAAGAAGCATAAGGACAAGTCAGCCCTCCACCACGATCCCCTCACGATTAATTAG

Coding sequence (CDS)

ATGGGTCCTCCTTCTCCACCCCCACCTCCATACAAAAGGAAATCCCCCCCTCCACCACCACCAAAGAGAGACGAATATCTCTCACCTCCACCACCTCCACCACCAAAAAAGTCTCCTCCTCCACCGCCAAAAAAGTCTCCTCCACCACCGCCAAAAAAGTCTCCACCACCACCGCCAAAAAAGCAAGATAACAAGTCACCACCTCCACCGCCACCAAAGAAAGACGAACATGAGTACTCCTCTCCTCCACCGCCACCAAAGAAAGACGAGCATGAGTACTCCTCTCCTCCACCACCACCGCCAAAGAAGCATAAGGACAAGTCAGCCCTCCACCACGATCCCCTCACGATTAATTAG

Protein sequence

MGPPSPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPKKSPPPPPKKSPPPPPKKQDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPKKHKDKSALHHDPLTIN*

Homology

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BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL
Match: A0A5A7VLF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00210 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 91/126 (72.22%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 3   PPS-----PPPPPYKRKSPPPPPPKRDEYLSPPPPPPP---KKSPPPPPKKSPPPPPKKS 62
           PPS     PPPPP KRKSPPPPPPKR+EYLSPPPPP     K  PPPPPK+  PP P+KS
Sbjct: 53  PPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPPKKHDNKSPPPPPPKEKTPPRPRKS 112

Query: 63  -PPPPPKKQDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSS-PPPPPPKKHKDKSALHH 119
            PPPPP+K DNKSPPPPPP+K +++ S PPPPPKK  HEY S PPPPPP+KHKDKS LHH
Sbjct: 113 PPPPPPRKHDNKSPPPPPPRKRDNK-SPPPPPPKK--HEYDSYPPPPPPRKHKDKSPLHH 172

[Close]

BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL
Match: A0A251U7B1 (Putative extensin 3 OS=Helianthus annuus OX=4232 GN=ATEXT3 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-08
Identity = 76/126 (60.32%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 5   SPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPK----KSPPPPPKKSPPPPPK-----KSP 64
           SPPPPP K KSPPPPP     Y SPPPPPP +    KSPPPPPKKSPPPPPK     KSP
Sbjct: 195 SPPPPPPK-KSPPPPPKHHYVYKSPPPPPPKEHYVYKSPPPPPKKSPPPPPKHHYVYKSP 254

Query: 65  PPPPKKQD--NKSPPPPPPKKD-------EHEYSSPPPPPKKDEHEYSSPPPPPPKKHKD 113
           PPPP K+    KSPPPPPPKK         + Y SPPPPP K+ + Y SPPPPPPKK   
Sbjct: 255 PPPPPKEHYVYKSPPPPPPKKSPPPPPKHHYVYKSPPPPPPKEHYVYKSPPPPPPKKSPP 314

[Close]

BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL
Match: A0A5N5I4V5 (Extensin-3-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_025769 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 78/125 (62.40%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 3   PPSPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKK------SPPPPPKK------SPPPP 62
           PP PP  P+  KSPPPPPPK+  +   PPPPPPKK      SPPPPPKK       PPPP
Sbjct: 135 PPPPPKKPHHHKSPPPPPPKKPNHYKSPPPPPPKKPHHHKSSPPPPPKKPYHYKSPPPPP 194

Query: 63  PK-----KSPPPPPKKQDN-KSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPKK- 109
           PK     KSPPPPPKK  + KSPPPPPPKK  H  S PPPPPKK  H Y SPPPPPPKK 
Sbjct: 195 PKKPHHHKSPPPPPKKPYHYKSPPPPPPKKPHHHKSPPPPPPKKPYH-YKSPPPPPPKKP 254

[Close]

BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL
Match: A0A2P5CD94 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161550 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 72/117 (61.54%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 4   PSPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPKK--------------SPPP 63
           P PPPPPY   SPPPPPPK   Y SPPPPP   KSPPPPP +              SPPP
Sbjct: 35  PPPPPPPYVYSSPPPPPPKY-YYTSPPPPPYVYKSPPPPPPEYYYKSPPPPKYYYTSPPP 94

Query: 64  PP--KKSPPPPPKKQDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPKKH 105
           PP   KSPPPPP K D KSPPPPPP KD+++Y SPPPPP KD+++Y SPPPPPP  H
Sbjct: 95  PPYVYKSPPPPPPKDDYKSPPPPPP-KDDYDYKSPPPPP-KDDYDYKSPPPPPPNPH 148

[Close]

BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL
Match: A0A2P5EUH3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150560 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-07
Identity = 73/122 (59.84%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 4   PSPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPK----KSPPPPPK------- 63
           P PPPPPY   SPPPPPPK   Y SPPPPP   KSPPPPP     KSPPPPPK       
Sbjct: 35  PPPPPPPYVYSSPPPPPPKY-YYTSPPPPPYVYKSPPPPPPEYYYKSPPPPPKYYYTSPP 94

Query: 64  ------KSPPPPPKKQDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPKKHKD 109
                 KSPPPPP K   KSPPPPPP KD+++Y SPPPPP KD+++Y SPPPPP   +  
Sbjct: 95  PPPYVYKSPPPPPPKYYYKSPPPPPP-KDDYDYKSPPPPPPKDDYDYKSPPPPPKDDYDY 154

[Close]

BLAST of CSPI07G12750.1 vs. NCBI nr
Match: XP_011659754.2 (extensin-3-like [Cucumis sativus] >KAE8646189.1 hypothetical protein Csa_016540 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 5.5e-40
Identity = 114/128 (89.06%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 5   SPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPKKSPPPPPKKSPPPPPKKQDN 64
           SPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPKKSPPPPPKKSPPPPPKKQDN
Sbjct: 77  SPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKKSPPPPPKKSPPPPPKKSPPPPPKKQDN 136

Query: 65  KSPPPPPPKKDEHEYS--------------SPPPPPKKDEHEYSSPPPPPPKKHKDKSAL 119
           KSPPPPPPKKDEHEYS              SPPPPPKKDEHEYSSPPPPPPKKHKDKSAL
Sbjct: 137 KSPPPPPPKKDEHEYSSPPPPPKKDEHEYYSPPPPPKKDEHEYSSPPPPPPKKHKDKSAL 196

[Close]

BLAST of CSPI07G12750.1 vs. NCBI nr
Match: KAA0068050.1 (hypothetical protein E6C27_scaffold4741G00020 [Cucumis melo var. makuwa] >TYK31538.1 hypothetical protein E5676_scaffold172G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 91/126 (72.22%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 3   PPS-----PPPPPYKRKSPPPPPPKRDEYLSPPPPPPP---KKSPPPPPKKSPPPPPKKS 62
           PPS     PPPPP KRKSPPPPPPKR+EYLSPPPPP     K  PPPPPK+  PP P+KS
Sbjct: 53  PPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPPKKHDNKSPPPPPPKEKTPPRPRKS 112

Query: 63  -PPPPPKKQDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSS-PPPPPPKKHKDKSALHH 119
            PPPPP+K DNKSPPPPPP+K +++ S PPPPPKK  HEY S PPPPPP+KHKDKS LHH
Sbjct: 113 PPPPPPRKHDNKSPPPPPPRKRDNK-SPPPPPPKK--HEYDSYPPPPPPRKHKDKSPLHH 172

[Close]

BLAST of CSPI07G12750.1 vs. NCBI nr
Match: XP_022039692.1 (extensin-3-like [Helianthus annuus] >KAF5807649.1 hypothetical protein HanXRQr2_Chr05g0235981 [Helianthus annuus])

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-09
Identity = 80/122 (65.57%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 5   SPPPPP----YKRKSPPPPPPKRD-EYLSPPPPPPPK----KSPPPPPKK------SPPP 64
           SPPPPP    YK KSPPPPPPK+  EY SPPPPPP      KSPPPPPKK       PPP
Sbjct: 152 SPPPPPPKTHYKYKSPPPPPPKKHYEYKSPPPPPPKTHYKYKSPPPPPKKHYEYKSPPPP 211

Query: 65  PPK-----KSPPPPPKK--QDNKSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPK 105
           PPK     KSPPPPP K     KSPPPPPPKK  +EY SPPPPP K  +EY SPPPPPPK
Sbjct: 212 PPKKHYEYKSPPPPPPKTHYKYKSPPPPPPKK-HYEYKSPPPPPPKKHYEYKSPPPPPPK 271

[Close]

BLAST of CSPI07G12750.1 vs. NCBI nr
Match: XP_021978126.2 (extensin-3 [Helianthus annuus] >KAF5796234.1 putative Extensin domain-containing protein [Helianthus annuus])

HSP 1 Score: 67.4 bits (163), Expect = 9.5e-08
Identity = 76/126 (60.32%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 5   SPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPK----KSPPPPPKKSPPPPPK-----KSP 64
           SPPPPP K KSPPPPP     Y SPPPPPP +    KSPPPPPKKSPPPPPK     KSP
Sbjct: 195 SPPPPPPK-KSPPPPPKHHYVYKSPPPPPPKEHYVYKSPPPPPKKSPPPPPKHHYVYKSP 254

Query: 65  PPPPKKQD--NKSPPPPPPKKD-------EHEYSSPPPPPKKDEHEYSSPPPPPPKKHKD 113
           PPPP K+    KSPPPPPPKK         + Y SPPPPP K+ + Y SPPPPPPKK   
Sbjct: 255 PPPPPKEHYVYKSPPPPPPKKSPPPPPKHHYVYKSPPPPPPKEHYVYKSPPPPPPKKSPP 314

[Close]

BLAST of CSPI07G12750.1 vs. NCBI nr
Match: KAB2635235.1 (extensin-3-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 78/125 (62.40%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 3   PPSPPPPPYKRKSPPPPPPKRDEYLSPPPPPPPKK------SPPPPPKK------SPPPP 62
           PP PP  P+  KSPPPPPPK+  +   PPPPPPKK      SPPPPPKK       PPPP
Sbjct: 135 PPPPPKKPHHHKSPPPPPPKKPNHYKSPPPPPPKKPHHHKSSPPPPPKKPYHYKSPPPPP 194

Query: 63  PK-----KSPPPPPKKQDN-KSPPPPPPKKDEHEYSSPPPPPKKDEHEYSSPPPPPPKK- 109
           PK     KSPPPPPKK  + KSPPPPPPKK  H  S PPPPPKK  H Y SPPPPPPKK 
Sbjct: 195 PKKPHHHKSPPPPPKKPYHYKSPPPPPPKKPHHHKSPPPPPPKKPYH-YKSPPPPPPKKP 254

The following BLAST results are available for this feature:

BLAST of CSPI07G12750.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLF0	5.8e-19	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A251U7B1	4.6e-08	60.32	Putative extensin 3 OS=Helianthus annuus OX=4232 GN=ATEXT3 PE=4 SV=1	[more]
A0A5N5I4V5	6.0e-08	62.40	Extensin-3-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_025769...	[more]
A0A2P5CD94	3.0e-07	61.54	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161550 PE...	[more]
A0A2P5EUH3	3.9e-07	59.84	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150560 PE=4 SV...	[more]

BLAST of CSPI07G12750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659754.2	5.5e-40	89.06	extensin-3-like [Cucumis sativus] >KAE8646189.1 hypothetical protein Csa_016540 ...	[more]
KAA0068050.1	1.2e-18	72.22	hypothetical protein E6C27_scaffold4741G00020 [Cucumis melo var. makuwa] >TYK315...	[more]
XP_022039692.1	6.6e-09	65.57	extensin-3-like [Helianthus annuus] >KAF5807649.1 hypothetical protein HanXRQr2_...	[more]
XP_021978126.2	9.5e-08	60.32	extensin-3 [Helianthus annuus] >KAF5796234.1 putative Extensin domain-containing...	[more]
KAB2635235.1	1.2e-07	62.40	extensin-3-like [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of CSPI07G12750.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G12750	CSPI07G12750	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G12750.1.cds2	CSPI07G12750.1.cds2	CDS
CSPI07G12750.1.cds1	CSPI07G12750.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G12750.1	CSPI07G12750.1-protein	polypeptide