CSPI07G12270.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12270.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein MNN4-like
Location	Chr7: 10564328 .. 10564621 (-)
Sequence length	294
RNA-Seq Expression	CSPI07G12270.1
Synteny	CSPI07G12270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

mRNA sequence

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Coding sequence (CDS)

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Protein sequence

MTQRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP*

Homology

[Close]

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL
Match: A0A0A0K7W9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MTQRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKK+VKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL
Match: A0A5A7T4G8 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001100 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-21
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 9  MQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVV-- 68
          M++KKEVKLRE+K LLNKI++  +S KKGK RKTPSEE+ EEFERKL++LS LEDE+V  
Sbjct: 1  MEEKKEVKLRERKGLLNKIEKVLLSLKKGKARKTPSEELVEEFERKLDNLSHLEDEMVNS 60

Query: 69 KPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
             KKKVT+KKSVLK+QF KRREEKEKKKGP
Sbjct: 61 SKKKKKVTIKKSVLKEQFVKRREEKEKKKGP 91

[Close]

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL
Match: A0A5A7V5R2 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00280 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           + L  +KKE+KLREQ+ELLNK+D+  +S KKGK +KT SEEI EEFE+KLEDLS  +DEV
Sbjct: 46  RVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEKKLEDLSSFKDEV 105

Query: 66  VKPLKK-KVTVKKSVLKKQFDKRREEKEK 94
           VKP KK KVT+KK VL     K  +++++
Sbjct: 106 VKPSKKRKVTIKKKVLGNNSSKGEKKRKR 134

[Close]

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           KAL+Q+KKE +L+EQ+ELLNK+D+  +S  KGK ++T SEEICEEF ++LE+LSPLEDEV
Sbjct: 73  KALVQEKKETRLKEQEELLNKVDKVTLSVDKGKPKRTQSEEICEEF-KELEELSPLEDEV 132

Query: 66  VKPLKKKVTVKKSVLKK 83
           VKP KKK    K  LK+
Sbjct: 133 VKPSKKKRNDLKDALKR 148

[Close]

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL
Match: A0A5D3DT81 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003600 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           + L  +KKE+KLREQ+ELLNK+D+  +S KKGK +KT SEEI EEFE+KLEDLS  +DEV
Sbjct: 46  RVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEKKLEDLSSFKDEV 105

Query: 66  VKPLKKKVTVKKSV 80
           VKP KK+  +K ++
Sbjct: 106 VKPSKKRKDMKDTL 119

[Close]

BLAST of CSPI07G12270.1 vs. NCBI nr
Match: KGN44432.1 (hypothetical protein Csa_016511 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MTQRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKK+VKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of CSPI07G12270.1 vs. NCBI nr
Match: KAA0038260.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 9  MQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVV-- 68
          M++KKEVKLRE+K LLNKI++  +S KKGK RKTPSEE+ EEFERKL++LS LEDE+V  
Sbjct: 1  MEEKKEVKLRERKGLLNKIEKVLLSLKKGKARKTPSEELVEEFERKLDNLSHLEDEMVNS 60

Query: 69 KPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
             KKKVT+KKSVLK+QF KRREEKEKKKGP
Sbjct: 61 SKKKKKVTIKKSVLKEQFVKRREEKEKKKGP 91

[Close]

BLAST of CSPI07G12270.1 vs. NCBI nr
Match: KAA0062287.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           + L  +KKE+KLREQ+ELLNK+D+  +S KKGK +KT SEEI EEFE+KLEDLS  +DEV
Sbjct: 46  RVLPYEKKEIKLREQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEKKLEDLSSFKDEV 105

Query: 66  VKPLKK-KVTVKKSVLKKQFDKRREEKEK 94
           VKP KK KVT+KK VL     K  +++++
Sbjct: 106 VKPSKKRKVTIKKKVLGNNSSKGEKKRKR 134

[Close]

BLAST of CSPI07G12270.1 vs. NCBI nr
Match: KAE8637518.1 (hypothetical protein CSA_004751 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           KAL Q KKE KL+E+KELLNK+++  +S KKGK +KT SEE  +E E++LED SPL+DEV
Sbjct: 54  KALAQAKKETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEV 113

Query: 66  VKP-LKKKVTVKKSVLKKQFDKRREEKEK 94
            KP  KKKVT+KK VL  QF +R+E   K
Sbjct: 114 AKPSKKKKVTIKKKVLNMQFVERQERFSK 142

[Close]

BLAST of CSPI07G12270.1 vs. NCBI nr
Match: KAA0053481.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 6   KALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65
           KAL+Q+KKE +L+EQ+ELLNK+D+  +S  KGK ++T SEEICEEF ++LE+LSPLEDEV
Sbjct: 73  KALVQEKKETRLKEQEELLNKVDKVTLSVDKGKPKRTQSEEICEEF-KELEELSPLEDEV 132

Query: 66  VKPLKKKVTVKKSVLKK 83
           VKP KKK    K  LK+
Sbjct: 133 VKPSKKKRNDLKDALKR 148

The following BLAST results are available for this feature:

BLAST of CSPI07G12270.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9	6.4e-40	98.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1	[more]
A0A5A7T4G8	5.1e-21	72.53	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00...	[more]
A0A5A7V5R2	6.1e-14	58.43	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00...	[more]
A0A5D3BSJ3	3.0e-13	62.34	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G...	[more]
A0A5D3DT81	1.1e-12	60.81	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00...	[more]

BLAST of CSPI07G12270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44432.1	1.3e-39	98.97	hypothetical protein Csa_016511 [Cucumis sativus]	[more]
KAA0038260.1	1.1e-20	72.53	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAA0062287.1	1.2e-13	58.43	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAE8637518.1	2.1e-13	59.55	hypothetical protein CSA_004751 [Cucumis sativus]	[more]
KAA0053481.1	6.2e-13	62.34	protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucu...	[more]

BLAST of CSPI07G12270.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G12270	CSPI07G12270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G12270.1.cds1	CSPI07G12270.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G12270.1	CSPI07G12270.1-protein	polypeptide