CSPI07G11160.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G11160.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 9352194 .. 9352536 (-)
Sequence length	234
RNA-Seq Expression	CSPI07G11160.1
Synteny	CSPI07G11160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCCACTCGCAAAGGCAATTATCGTTCCTCCACTTCAACTTCTACCTCCATTGCTTCAGGTACGGCTGTCTGTCAAAGTTCATCCTATAATAATCCATCGTCTCGATCTACAAATGCTTTGTTGCCTCCTTCAAAGCAAATCAAGATGATACTTTAGTGGTGACCTAGGTTACGCAACATTAGCCTTGTGGATTCGCAACCTAAACAAGGTGCCTCTTCACCCTTGCATGGTGCGACTTCTTCAGTTTGAGCCTTTTGTGGCTCCTTTTGCTTCTCGACCCTCTACTTCGGATTCCCCTACTTTGAATAGATCTACTCGCCCTTCTGTTGATCCTTAA

mRNA sequence

ATGGTATCCACTCGCAAAGGCAATTATCGTTCCTCCACTTCAACTTCTACCTCCATTGCTTCAGGTTACGCAACATTAGCCTTGTGGATTCGCAACCTAAACAAGGTGCCTCTTCACCCTTGCATGGTGCGACTTCTTCAGTTTGAGCCTTTTGTGGCTCCTTTTGCTTCTCGACCCTCTACTTCGGATTCCCCTACTTTGAATAGATCTACTCGCCCTTCTGTTGATCCTTAA

Coding sequence (CDS)

ATGGTATCCACTCGCAAAGGCAATTATCGTTCCTCCACTTCAACTTCTACCTCCATTGCTTCAGGTTACGCAACATTAGCCTTGTGGATTCGCAACCTAAACAAGGTGCCTCTTCACCCTTGCATGGTGCGACTTCTTCAGTTTGAGCCTTTTGTGGCTCCTTTTGCTTCTCGACCCTCTACTTCGGATTCCCCTACTTTGAATAGATCTACTCGCCCTTCTGTTGATCCTTAA

Protein sequence

MVSTRKGNYRSSTSTSTSIASGYATLALWIRNLNKVPLHPCMVRLLQFEPFVAPFASRPSTSDSPTLNRSTRPSVDP*

Homology

The following BLAST results are available for this feature:

BLAST of CSPI07G11160.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G11160.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G11160.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G11160.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G11160	CSPI07G11160	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G11160.1.cds2	CSPI07G11160.1.cds2	CDS
CSPI07G11160.1.cds1	CSPI07G11160.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G11160.1	CSPI07G11160.1-protein	polypeptide