CSPI07G10100.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G10100.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glutamate-gated kainate-type ion channel receptor subunit GluR5
Location	Chr7: 8175322 .. 8175555 (-)
Sequence length	234
RNA-Seq Expression	CSPI07G10100.1
Synteny	CSPI07G10100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

mRNA sequence

ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

Coding sequence (CDS)

ATGTTACTTTCTTTCAACTTTAGATTCATTCTCTTCTTAACACTTGTTCTCGCTCTCACCTCCATTTCCACAGACGCTGCGAGAGTTCCAACACCGTATTGGGAGCAGATGTTGCCTAAGAAGTTACCCTCTCCATCGTCTGCGCCGTCCAAAGGGACAAACACCGTCGCTCCGTCTTCTTCTAAACCTATGAAAGTTAACGGGAATCTGCCAGCAAAGGACGGTAACGTTTAG

Protein sequence

MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSSSKPMKVNGNLPAKDGNV*

Homology

[Close]

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+FNFRFILFLTL+LALTSIS+DAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 78
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

[Close]

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL
Match: A0A7N2MJW9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML S+  + +LF  L   + S   +A+R+P  YWEQMLPKKLP PSS+PSKGTN+++ SS
Sbjct: 1  MLGSWRHKCLLFTLLAFIVLS---EASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSS 60

Query: 61 SKPMKVNGNLPAKDGNV 78
          SK +K N NLP+ DG V
Sbjct: 61 SKALKANRNLPSSDGKV 74

[Close]

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL
Match: W9S9P5 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 11 LFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVA-PSSSKPMKVNGN 70
          LFLTL+ AL  +S +A+R+P   WEQMLPKKLPSP+S+PSKGTN+V+  SSSK + V+ N
Sbjct: 10 LFLTLIFALVILS-EASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPAKDGNV 78
          LP+ DG V
Sbjct: 70 LPSSDGKV 76

[Close]

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 1   MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
           ML S+  ++ LF  L++A   +S +A+R+P  Y++QM+PKKLPSPSS+PSKGTN+V  SS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSS 96

Query: 61  SKPMKVNGNLPAKDGNV 78
           SK +K + NLP+ DG V
Sbjct: 97  SKAVKADANLPSFDGKV 112

[Close]

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL
Match: A0A7J6GWN4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008835 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1   MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
           ML S+  ++ LF  L++A   +S +A+R+P  Y++QM+PKKLPSPSS+PSKGTN+V  SS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSS 96

Query: 61  SKPMKVNGNLPAKDG 76
           SK +K + NLP+ DG
Sbjct: 97  SKAVKADANLPSFDG 110

[Close]

BLAST of CSPI07G10100.1 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 78
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

[Close]

BLAST of CSPI07G10100.1 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 9.0e-31
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          MLL+FNFRFILFLTL+LALTSIS+DAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 SKPMKVNGNLPAKDGNV 78
          SKPMKVNGNLPAKDGNV
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

[Close]

BLAST of CSPI07G10100.1 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 8.7e-18
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          M LSF  RFI  L LVLAL S+S++AARVPT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81

Query: 61 SKPMKVNGNLPAK 74
           K +KV+GNLPAK
Sbjct: 82 FKTVKVDGNLPAK 94

[Close]

BLAST of CSPI07G10100.1 vs. NCBI nr
Match: EXC32449.1 (hypothetical protein L484_012616 [Morus notabilis])

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-10
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 11 LFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVA-PSSSKPMKVNGN 70
          LFLTL+ AL  +S +A+R+P   WEQMLPKKLPSP+S+PSKGTN+V+  SSSK + V+ N
Sbjct: 10 LFLTLIFALVILS-EASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 71 LPAKDGNV 78
          LP+ DG V
Sbjct: 70 LPSSDGKV 76

[Close]

BLAST of CSPI07G10100.1 vs. NCBI nr
Match: KAF9855135.1 (hypothetical protein H0E87_006638 [Populus deltoides])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60
          ML+S+  + +LF   +LA   +S+DA+R+P  YWEQMLPKKLP+PSS+PSKGTN+V+ S 
Sbjct: 1  MLVSWRQKCLLF--TLLAFVVLSSDASRLPKAYWEQMLPKKLPAPSSSPSKGTNSVSRSY 60

Query: 61 SKPMKVNGNLPAKDGNV 78
          S  +K + NL + DG V
Sbjct: 61 STTVKSDSNLSSSDGKV 75

The following BLAST results are available for this feature:

BLAST of CSPI07G10100.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G10100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI56	4.3e-31	96.10	Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ...	[more]
A0A7N2MJW9	1.5e-10	54.55	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
W9S9P5	2.5e-10	61.76	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1	[more]
A0A803PR73	4.2e-10	53.25	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6GWN4	1.6e-09	53.33	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008835 PE=4 SV=1	[more]

BLAST of CSPI07G10100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646070.1	1.1e-31	100.00	hypothetical protein Csa_015561 [Cucumis sativus]	[more]
TYK23265.1	9.0e-31	96.10	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va...	[more]
KAG6607702.1	8.7e-18	75.34	hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EXC32449.1	5.1e-10	61.76	hypothetical protein L484_012616 [Morus notabilis]	[more]
KAF9855135.1	1.1e-09	53.25	hypothetical protein H0E87_006638 [Populus deltoides]	[more]

BLAST of CSPI07G10100.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G10100	CSPI07G10100	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10100.1.cds1	CSPI07G10100.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G10100.1	CSPI07G10100.1-protein	polypeptide