CSPI07G08730.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08730.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 6568971 .. 6572150 (-)
Sequence length	390
RNA-Seq Expression	CSPI07G08730.1
Synteny	CSPI07G08730.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTGAGTTTTTCTTTATAGTTTTCCATTGTTGATGATGAGGTCCCCACTTTTTTCTTTTTTTTTTGATTCATTATCATTATTTTACCAACATATATTTTTTTAATTGGTGTGAATTTGTATTTTGCTATTTTTTTCATGTTTGATTTAGCTGTCTATATTCTATTTGCCCACTCATAGCTTAGCCATTACTTCTAGTATGTGTATGTTGTGAATATTTGTGCACTTTCCATTGCAGTATACTTCAATATATTTTTTCCCTAGCTAGCCTTCGATGTTTCATTCCCTTCATCTATGTAAATACACACCATGTGCATTGTGTGGCAGGTATACTGCATTTAACTTTGACAAAATTTTCTAGTTATCTAACTTTTCTTTTTCCATATGTTATGTGTTGGCTTTTCCATTATCATCAGTCTATGCTCAAATTTGGTTGTTTAGGGGTCTTCAATGCATCATTACTTCTTACATTTCCCAGCCATATATACTTGTTATGCCATTATGCCTTATGTGTGTTTTCTCCTCGGTTCATCTTCATAGAAACTCTTGATTACTCAATTCTTTGGTATGTATATGCATAAATGTGGTTTGTGTTCCATTGTGTGTTTGGTCTTCACAATCTACTTATGTACTTGTCATTGATTGAAGTTGTGATCCATGTTAGGCCACTTGTTGTTTATTTACATGCATTTTCATGTCACCAATTCCATACTACCCGCCTTTTTCCATTATTGTTCTCCATTCCAATAACTTTTATTTCTCCACATTTTCGACTATTGCATATTTGAAGCCCTTGGTCCATTGTTTATGTTCATTTTCATGCCTTTCATAGCACCACATTTGCTACTACTATATTTTTGAGCATTTTTTCCATATTTTTTGTTCATGTGTACGTCTTTCTTATCATCTAGCATTGCATATTGCATATGTGGTGCTATGAAATGTCTTCACATTTGTTCCACTCCATGAAATTCGATTTCAAATTTTGTGCACCTTTTTTTTCCTCCATCCACCAAGTACGTAGGAATATGTATTAAAATAATGTGTTTTTCCAAACTTATTAGATAAATAATGCTGATTGGAAACTAATTACAAAAATAATGCAGTTTTGGAAGAGAGAAGGTCGAGCATTGAACTTTGACCTTTATTTAAAAAAAAAGGAAGGGGGTGAGTTTTGAGTCTTCAAGACTTGCCCTAATTAAATATATATATATATATATATTCGAGTCATTTTGCGCAATAGCAGGAAAAACATGTATGGTCAAATCACTTCTTTCCCATGAAGCTTTTCTGTGGGTAGGTTGAGTATTTAAAGCTCCACTTAATTATATATATATATTTATATTATGGCCATTATGCGTAACGACAAGAAGAGTAGACATTCATGCATGGTCAAATCGTTTTTTTCTTGTGAAGAAGGGCGAGTACTCTCTCTTCTCTTTTATATCCTTCCTCTTCATTCTCATCTTACCTCTTGGCCATTCTTCTCCCATTCAGATCATCTTTCACAAAATACTCTCAGCTCTTCTTCTTTAATTCCCATCTTTCACAAATCCTCTCATCCTTCAAATTACCTCTCAATTTTCCTTCCCATTTTCCCTCCAATCCCCATCATATTTTCATCCTTAATATTTAAATCAGGACGTTGGCTGCTCCTCGTTGCAATCAGTCTCAATAGCTTGGCAACTCAACTGGAGAATTGAAAAATGATTAAGAGAGTCGAGTTGTTACATTTTTACCTTTTATTCTTATTTTATTATGATTTTTTGTTTTTTTTATTTGATTCATATCGAGTGTTCGTATTTTTTTATTGGTACATTTTTTAAATATGTCATCATGCATTTTACACACACTCACAAGTCCTCTACTCAGGCTACAACTTTATAGTATTAGGATTGAGGAATGAGTAGTGTTAACCTTCAAGAGATTTCGACTTCCGTGTAGGCACAAGAAAAATGTTCGTTCAGATTAATTCTTTTGTTATTTCTTAAATTAACATTAGAACAAGTTTGAGGGTCTTTCCCTTCTAGAAGTTTAGATGATACAAGACCGTAACATTTTCTATTTGGCATATTTTATCTAAAAGTCAAACGGTCAAAATTATTATTGTTTTTTTTTAAACAAAGTTACATGTTTCTAAAATTTGAAATCATACCATATTTCCTTTATTTTTTTTTAAAAAAGGGGTTAAATCACAATATTTTTTACATTATTTTTTTTAAGGAAAGTTTGATTTTAGTTAATATTTATCTTAGTTTCCTTGAAATTGGTTCTTTGGCTTCGATCATATATAGTTAGGGTAGTATTTACCTTGTAGAAGCACGTGAAAAACGGTAACATCCCAAAACTATTAAGATAATTTTTAATTTTATTTTGTTGAAATTGGGTATTAATTGAGATTTGATGTTAGATGAGTTAAGTATTTAAGGAAGAATTGTTAATTATTTGAGAGTTTTGGTTATTAGTTGTTAATTATGCAATTAATTTTCGAAAGAGAAAAAAAAAAATATTTAAGGATAATATAATTATTAAAATGTTATATCGTGATTTTGGTGGAATAAAAAGAGGAAAAGTTGTTTTAATGGGTAATTAAGGTGGAGTGAGCTTTATTTCGAAACGTAAAAAGTGAAAGAAAAATTAATTAAAAGATATAATAATGATATTTATTATTATCATTATTAATAATATTATCATTATTAAATAAGCCTTCTCTCGTTTTACGTGCATCATCTTCTCCACCACATTGATTCTCCTTCACCATTCAACCTTAGTCGCCGCCGCATTGTGCGTCAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT

mRNA sequence

ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT

Coding sequence (CDS)

ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT

Protein sequence

MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEVTTVAQSSSGTQLAASHHSLVEIYSLVAKSSISHCLHNHLKPAAPPSSKLSSAVTLSSVETIMGRSLHLHSVAGHRCA

Homology

[Close]

BLAST of CSPI07G08730.1 vs. NCBI nr
Match: KAE8645969.1 (hypothetical protein Csa_015496, partial [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEVTTV 57
          MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKE  +V
Sbjct: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEGDSV 56

[Close]

BLAST of CSPI07G08730.1 vs. NCBI nr
Match: XP_031744530.1 (uncharacterized protein LOC101207447 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEVTTV 57
          MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKE  +V
Sbjct: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEGDSV 56

The following BLAST results are available for this feature:

BLAST of CSPI07G08730.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08730.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645969.1	1.5e-22	94.64	hypothetical protein Csa_015496, partial [Cucumis sativus]	[more]
XP_031744530.1	1.5e-22	94.64	uncharacterized protein LOC101207447 [Cucumis sativus]	[more]

BLAST of CSPI07G08730.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G08730	CSPI07G08730	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G08730.mrna.cds.2	CSPI07G08730.mrna.cds.2	CDS
CSPI07G08730.mrna.cds.1	CSPI07G08730.mrna.cds.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G08730.1	CSPI07G08730.1-protein	polypeptide