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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTGGGTGGAGTTGCCGTCAGACGGTGGGAGGCCGTCGGGAATGGCTCTAAAATGAAAGTCAGGCAAGCCATCCAAAGAGTTGGGACCTCGGGATCTGAGGAGACGTCTATGGTTGTATTCTGTATTGACAAACGTTATGTGAAAGCCTTTGTGGTGAAAGAGTTTTGCAAGCTT mRNA sequence ATGTTGGGTGGAGTTGCCGTCAGACGGTGGGAGGCCGTCGGGAATGGCTCTAAAATGAAAGTCAGGCAAGCCATCCAAAGAGTTGGGACCTCGGGATCTGAGGAGACGTCTATGGTTGTATTCTGTATTGACAAACGTTATGTGAAAGCCTTTGTGGTGAAAGAGTTTTGCAAGCTT Coding sequence (CDS) ATGTTGGGTGGAGTTGCCGTCAGACGGTGGGAGGCCGTCGGGAATGGCTCTAAAATGAAAGTCAGGCAAGCCATCCAAAGAGTTGGGACCTCGGGATCTGAGGAGACGTCTATGGTTGTATTCTGTATTGACAAACGTTATGTGAAAGCCTTTGTGGTGAAAGAGTTTTGCAAGCTT Protein sequence MLGGVAVRRWEAVGNGSKMKVRQAIQRVGTSGSEETSMVVFCIDKRYVKAFVVKEFCKL
Homology
BLAST of CSPI07G05310.1 vs. NCBI nr
Match: KAG5526033.1 (hypothetical protein RHGRI_032355 [Rhododendron griersonianum]) HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query: 1 MLGGVAVRRW-EAVGNGSKMKVRQAIQRVGTSGSEETSMVVFCIDKRYVKAFVVKEFCKL 60
+LG V V EAVG+G KVRQA++ VGTSG E+TS+VV C+ K YV+AFVV+EFC +
Sbjct: 23 VLGDVGVDSGREAVGDGFVAKVRQAVEGVGTSGFEQTSVVVLCVHKGYVEAFVVQEFCHI 82
BLAST of CSPI07G05310.1 vs. NCBI nr
Match: KAF7150862.1 (hypothetical protein RHSIM_Rhsim02G0050500 [Rhododendron simsii]) HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0
Query: 1 MLGGVAVRRWEAVGNGSKMKVRQAIQRVGTSGSEETSMVVFCIDKRYVKAFVV 54
+LG V V WEAV +G +VRQA++ VGTSG E+TS+VV C+ K YV+AFVV
Sbjct: 834 VLGDVGVGGWEAVWDGFVAEVRQAVKGVGTSGLEQTSVVVLCVHKGYVEAFVV 886
BLAST of CSPI07G05310.1 vs. NCBI nr
Match: KAF7143746.1 (hypothetical protein RHSIM_Rhsim05G0021100 [Rhododendron simsii]) HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05 Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0
Query: 1 MLGGVAVRRWEAVGNGSKMKVRQAIQRVGTSGSEETSMVVFCIDKRYVKAFVV 54
+LG V V WEAV +G +V+QA++ VGTSG E+TS+VV C+ K YV+AFVV
Sbjct: 50 VLGDVGVGGWEAVWDGFVAEVQQAVKGVGTSGLEQTSVVVLCVHKGYVEAFVV 102
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG5526033.1 | 3.1e-07 | 58.33 | hypothetical protein RHGRI_032355 [Rhododendron griersonianum] | [more] |
| KAF7150862.1 | 4.4e-06 | 58.49 | hypothetical protein RHSIM_Rhsim02G0050500 [Rhododendron simsii] | [more] |
| KAF7143746.1 | 1.3e-05 | 56.60 | hypothetical protein RHSIM_Rhsim05G0021100 [Rhododendron simsii] | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| CSPI07G05310.mrna.cds.1 | CSPI07G05310.mrna.cds.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI07G05310.1 | CSPI07G05310.1-protein | polypeptide |
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