CSPI06G29970.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G29970.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr6: 25894619 .. 25895466 (-)
Sequence length	848
RNA-Seq Expression	CSPI06G29970.1
Synteny	CSPI06G29970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGATTGATGGTATTAGATGATATGAAAACTAAGGGGATGGAGGTATAATTGAAGGTTAGAGGCACAGCCCACAGAAGTCAGTTTGTTGATGGTTTGGGGCATCGTTTGTCACGTGCCACCACTGCCATTACGACAAACGTGCCACACTCCACCTCCCTCTACCCTCGCACTTGCATGGCCCCTTCTACAAAACCTAAATTTTCTTAACTCTTCTGTTCCTTAACCTAACCATTATTATTATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGA

mRNA sequence

AGTTGATTGATGGTATTAGATGATATGAAAACTAAGGGGATGGAGGTATAATTGAAGGTTAGAGGCACAGCCCACAGAAGTCAGTTTGTTGATGGTTTGGGGCATCGTTTGTCACGTGCCACCACTGCCATTACGACAAACGTGCCACACTCCACCTCCCTCTACCCTCGCACTTGCATGGCCCCTTCTACAAAACCTAAATTTTCTTAACTCTTCTGTTCCTTAACCTAACCATTATTATTATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGA

Coding sequence (CDS)

ATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGA

Protein sequence

MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNNGDVVHN*

Homology

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-24
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHF 76
           ++ +L+     + A QS     +Q + +Y +LS  + V V++L+   F + FFS+Y RH 
Sbjct: 15  IVFLLILSSADLAASQSQPGPTNQPY-NYGRLSPAMAVIVVILIAALFFMGFFSIYFRHC 74

Query: 77  LEL-NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 136
             + +A       +  R      + GL  + +  FP   +S +K  K+GK  LECA+CL 
Sbjct: 75  SGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLN 134

Query: 137 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 177
           EF+  ETLRLLPKC HVFHP CIDAWL +  TCP+CRA LA
Sbjct: 135 EFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 69/166 (41.57%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYL-KLSRPLTVTVLLLLFIFFIVLFFSV 72
           SL +L++ LL    +V A Q  +  Q      Y   LS  + V V++++   F + FF+V
Sbjct: 8   SLPVLVLFLL---LSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTV 67

Query: 73  YIRHFL-ELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLEC 132
           YIRH    ++ +      +  RV     + GL A  I  FP   +S +K  K+GK +LEC
Sbjct: 68  YIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALEC 127

Query: 133 AVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 177
           A+CL EF+  ETLRLLPKC HVFHP CI AWL    TCP+CR  LA
Sbjct: 128 AICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA 170

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-22
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 14  LSLLIIILL------HPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVL 73
           L LL+ +LL        F   QA    S     S     +    + + +++L+ +FF + 
Sbjct: 23  LQLLLFLLLLSSHGGFKFVAGQATHGGSDVSGDSS----RFDPTMAILMIVLVSVFFFLG 82

Query: 74  FFSVYIRHFLEL---------NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAI 133
           FFSVYIR  LE          N A + +  + ++      + GL A+ I  FP   +S +
Sbjct: 83  FFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQ------ARGLDASIIETFPTFQYSTV 142

Query: 134 KEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQL 176
           K +++GK +LEC+VCL EF+  ETLRL+PKC HVFHP CIDAWL S  TCP+CRA L
Sbjct: 143 KTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-22
Identity = 66/162 (40.74%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 20  ILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVL-LLLFIFFIVLFFSVYIRHFLE 79
           I+LH    +Q++ + +QS S S         P   TV  +L+ +FF+    SVYIRH   
Sbjct: 14  IILHVAIIIQSKAN-AQSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCAR 73

Query: 80  LNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQ 139
            N  S          D      GL  A + +FP+ A+S++KE K+G   LECA+CL E +
Sbjct: 74  SNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELE 133

Query: 140 HYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 181
            +ET+RLLP C H+FH  CID WL S ATCP+CR+ L A  N
Sbjct: 134 DHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSN 174

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot
Match: Q9SK92 (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-21
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 54  VTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVD-RFGPSHGLKAAEIGAFPL 113
           + +++L+ +FF +   SVY+R  L+     D+       ++ R     GL A+ I  FP 
Sbjct: 41  IIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPT 100

Query: 114 VAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICR 173
             +S +K +++GK +LEC VCL EF+  ETLRL+P+C HVFHP CIDAWL S  TCP+CR
Sbjct: 101 FPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160

Query: 174 AQL--AAGENFSSE 185
           A L    GE+ SSE
Sbjct: 161 ANLVPVPGESVSSE 174

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL
Match: A0A0A0KIT7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLL 60
           MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSP  SQSQSHLHYLKLSRPLTVTVLLLL
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSP--SQSQSHLHYLKLSRPLTVTVLLLL 60

Query: 61  FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE 120
           FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE
Sbjct: 61  FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE 120

Query: 121 MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 180
           MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN
Sbjct: 121 MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 180

Query: 181 FSSEFVAIDVVDHNNGDVVHN 202
           FSSEFVAIDVVDHNNGDVVHN
Sbjct: 181 FSSEFVAIDVVDHNNGDVVHN 199

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL
Match: A0A5A7T2D1 (E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003080 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.7e-58
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 76  FLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 135
           ++ELNAASDAVLRSL R+DRFGPSHGLK AEI AFPLVAHSAIKEMKMGKWSLECAVCLA
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 136 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNN 195
           EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRA LAAGENFSSEFVAI VVD  N
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVD-RN 129

Query: 196 GDVVHN 202
           G+VV N
Sbjct: 130 GEVVDN 134

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL
Match: A0A6J1BTV2 (E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC111005711 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 90/195 (46.15%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQ-SPSQSQSQSHLHYLK----LSRPLTVTVLLLLFIFFIVLFFSV 76
           L+++L + ++ + A   S  Q + ++   YLK    LSRP+ V +++L+ IFFI++F SV
Sbjct: 10  LLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFIMVFLSV 69

Query: 77  YIRHFLELNAASDAVLRSLERVDRFG--PSHGLKAAEIGAFPLVAH---SAIKEMKMGKW 136
           Y+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+      
Sbjct: 70  YLRHYLELHASTRATV-TADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------ 129

Query: 137 SLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFV 196
            +ECAVCLAEFQH+ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G +   +  
Sbjct: 130 HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSDSPDKST 189

Query: 197 AIDVVDHNNGDVVHN 202
           A    D + G V+ N
Sbjct: 190 AASEFDDHRGVVIIN 197

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL
Match: A0A2P6RQ73 (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0112141 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.6e-31
Identity = 79/172 (45.93%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 11  LHS-LSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFF 70
           LHS L LL+ ++L  +  V AQQSP   Q+  + +    +  + + ++ L+  FFIV FF
Sbjct: 3   LHSFLLLLLCLVLLTYTDVNAQQSPGPMQTNGYAYLENFNSSMALVIVFLVCAFFIVGFF 62

Query: 71  SVYIRHFLELNAA-SDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSL 130
           S+YIR   E + A +   L +   +   G   G+  A I  FP+  +S +K++K+GK +L
Sbjct: 63  SIYIRRCAETHIANAGGSLGAAAAIGMAGRRRGVDPAVIEKFPMFVYSDVKDLKIGKGTL 122

Query: 131 ECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 181
           ECAVCL+EF+ YETLRLLPKC HVFHP CIDAWLAS  TCP+CRA+L    N
Sbjct: 123 ECAVCLSEFEDYETLRLLPKCHHVFHPDCIDAWLASHITCPVCRAKLTPDSN 174

[Close]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL
Match: A0A2G9GP98 (RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20309 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.2e-29
Identity = 80/198 (40.40%), Postives = 119/198 (60.10%), Query Frame = 0


Query: 8   TPNLHS----LSLLIIILLHPFFTVQAQQ-SP-SQSQSQSHLHYLKLSRPLTVTVLLLLF 67
           TP  H     LSLL +++      V AQ  SP +++ +Q + +Y + S  + + +++L+ 
Sbjct: 3   TPGEHHRVFFLSLLCVLIFPKIILVAAQPGSPGNENGNQQYPNYARFSPSMAIIIVVLIA 62

Query: 68  IFFIVLFFSVYIRHFLELNAASDAVLRSLE-RVDRFGPSHGLKAAEIGAFPLVAHSAIKE 127
             F + FFS+YIRH  + + ++ ++ R+L  R  R   + GL  + I  FP  ++S +K+
Sbjct: 63  ALFFMGFFSIYIRHCSDSSGSASSIRRALSMRARRAAAARGLDPSVIETFPTFSYSEVKD 122

Query: 128 MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 187
            K+GK +LECAVCL EF+  +TLRLLPKC HVFHP CIDAWL S  TCP+CRA L   E 
Sbjct: 123 HKIGKGTLECAVCLNEFEENDTLRLLPKCDHVFHPECIDAWLESHVTCPVCRANLVP-EP 182

Query: 188 FSSEFVAIDVVDHNNGDV 199
              + V + V   NN D+
Sbjct: 183 GEGQQVPVPVSTENNNDI 199

[Close]

BLAST of CSPI06G29970.1 vs. NCBI nr
Match: KGN48724.1 (hypothetical protein Csa_004396 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLL 60
           MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSP  SQSQSHLHYLKLSRPLTVTVLLLL
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSP--SQSQSHLHYLKLSRPLTVTVLLLL 60

Query: 61  FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE 120
           FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE
Sbjct: 61  FIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKE 120

Query: 121 MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 180
           MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN
Sbjct: 121 MKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 180

Query: 181 FSSEFVAIDVVDHNNGDVVHN 202
           FSSEFVAIDVVDHNNGDVVHN
Sbjct: 181 FSSEFVAIDVVDHNNGDVVHN 199

[Close]

BLAST of CSPI06G29970.1 vs. NCBI nr
Match: KAA0036326.1 (E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 7.7e-58
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 76  FLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 135
           ++ELNAASDAVLRSL R+DRFGPSHGLK AEI AFPLVAHSAIKEMKMGKWSLECAVCLA
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 136 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNN 195
           EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRA LAAGENFSSEFVAI VVD  N
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVD-RN 129

Query: 196 GDVVHN 202
           G+VV N
Sbjct: 130 GEVVDN 134

[Close]

BLAST of CSPI06G29970.1 vs. NCBI nr
Match: XP_022133016.1 (E3 ubiquitin-protein ligase ATL6-like [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-35
Identity = 90/195 (46.15%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQ-SPSQSQSQSHLHYLK----LSRPLTVTVLLLLFIFFIVLFFSV 76
           L+++L + ++ + A   S  Q + ++   YLK    LSRP+ V +++L+ IFFI++F SV
Sbjct: 10  LLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFIMVFLSV 69

Query: 77  YIRHFLELNAASDAVLRSLERVDRFG--PSHGLKAAEIGAFPLVAH---SAIKEMKMGKW 136
           Y+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+      
Sbjct: 70  YLRHYLELHASTRATV-TADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------ 129

Query: 137 SLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFV 196
            +ECAVCLAEFQH+ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G +   +  
Sbjct: 130 HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSDSPDKST 189

Query: 197 AIDVVDHNNGDVVHN 202
           A    D + G V+ N
Sbjct: 190 AASEFDDHRGVVIIN 197

[Close]

BLAST of CSPI06G29970.1 vs. NCBI nr
Match: XP_024185323.1 (RING-H2 finger protein ATL32 [Rosa chinensis] >PRQ48564.1 putative transcription factor C2H2 family [Rosa chinensis])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-30
Identity = 79/172 (45.93%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 11  LHS-LSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFF 70
           LHS L LL+ ++L  +  V AQQSP   Q+  + +    +  + + ++ L+  FFIV FF
Sbjct: 3   LHSFLLLLLCLVLLTYTDVNAQQSPGPMQTNGYAYLENFNSSMALVIVFLVCAFFIVGFF 62

Query: 71  SVYIRHFLELNAA-SDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSL 130
           S+YIR   E + A +   L +   +   G   G+  A I  FP+  +S +K++K+GK +L
Sbjct: 63  SIYIRRCAETHIANAGGSLGAAAAIGMAGRRRGVDPAVIEKFPMFVYSDVKDLKIGKGTL 122

Query: 131 ECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 181
           ECAVCL+EF+ YETLRLLPKC HVFHP CIDAWLAS  TCP+CRA+L    N
Sbjct: 123 ECAVCLSEFEDYETLRLLPKCHHVFHPDCIDAWLASHITCPVCRAKLTPDSN 174

[Close]

BLAST of CSPI06G29970.1 vs. NCBI nr
Match: GFP98694.1 (E3 ubiquitin-protein ligase atl6 [Phtheirospermum japonicum])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-30
Identity = 82/191 (42.93%), Postives = 115/191 (60.21%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVY 72
           S+ LL+ +L   F  V  Q  P  + +  +  Y + S  + + +++L+   F + FFS+Y
Sbjct: 4   SVFLLLFLLPFLFVLVGGQPGPPSTPNNEY-PYARFSPSMAIIIVVLIAALFFMGFFSIY 63

Query: 73  IRHFLELNAASDAVLRSLE-RVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECA 132
           IRH  + + A+ +V R+L  R  R   + GL A  I +FP  ++S +K+ K+GK +LECA
Sbjct: 64  IRHCSDSSGAAGSVRRALSLRSRRAAAARGLDAEAIASFPTFSYSEVKDHKIGKGTLECA 123

Query: 133 VCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENF-------SSE 192
           VCL EF+ +ETLRLLPKC HVFHP CIDAWL S  TCP+CRA LA   +        SS 
Sbjct: 124 VCLNEFEEHETLRLLPKCDHVFHPECIDAWLESHVTCPVCRANLAEAADAADDPLPESSS 183

Query: 193 FVAIDVVDHNN 196
             A+  VDHNN
Sbjct: 184 STAVVDVDHNN 193

[Close]

BLAST of CSPI06G29970.1 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-25
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHF 76
           ++ +L+     + A QS     +Q + +Y +LS  + V V++L+   F + FFS+Y RH 
Sbjct: 15  IVFLLILSSADLAASQSQPGPTNQPY-NYGRLSPAMAVIVVILIAALFFMGFFSIYFRHC 74

Query: 77  LEL-NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 136
             + +A       +  R      + GL  + +  FP   +S +K  K+GK  LECA+CL 
Sbjct: 75  SGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLN 134

Query: 137 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 177
           EF+  ETLRLLPKC HVFHP CIDAWL +  TCP+CRA LA
Sbjct: 135 EFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of CSPI06G29970.1 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 111.3 bits (277), Expect = 9.1e-25
Identity = 69/166 (41.57%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQSPSQSQSQSHLHYL-KLSRPLTVTVLLLLFIFFIVLFFSV 72
           SL +L++ LL    +V A Q  +  Q      Y   LS  + V V++++   F + FF+V
Sbjct: 8   SLPVLVLFLL---LSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTV 67

Query: 73  YIRHFL-ELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLEC 132
           YIRH    ++ +      +  RV     + GL A  I  FP   +S +K  K+GK +LEC
Sbjct: 68  YIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALEC 127

Query: 133 AVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 177
           A+CL EF+  ETLRLLPKC HVFHP CI AWL    TCP+CR  LA
Sbjct: 128 AICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA 170

[Close]

BLAST of CSPI06G29970.1 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 14  LSLLIIILL------HPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVL 73
           L LL+ +LL        F   QA    S     S     +    + + +++L+ +FF + 
Sbjct: 23  LQLLLFLLLLSSHGGFKFVAGQATHGGSDVSGDSS----RFDPTMAILMIVLVSVFFFLG 82

Query: 74  FFSVYIRHFLEL---------NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAI 133
           FFSVYIR  LE          N A + +  + ++      + GL A+ I  FP   +S +
Sbjct: 83  FFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQ------ARGLDASIIETFPTFQYSTV 142

Query: 134 KEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQL 176
           K +++GK +LEC+VCL EF+  ETLRL+PKC HVFHP CIDAWL S  TCP+CRA L
Sbjct: 143 KTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189

[Close]

BLAST of CSPI06G29970.1 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 66/162 (40.74%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 20  ILLHPFFTVQAQQSPSQSQSQSHLHYLKLSRPLTVTVL-LLLFIFFIVLFFSVYIRHFLE 79
           I+LH    +Q++ + +QS S S         P   TV  +L+ +FF+    SVYIRH   
Sbjct: 14  IILHVAIIIQSKAN-AQSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCAR 73

Query: 80  LNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQ 139
            N  S          D      GL  A + +FP+ A+S++KE K+G   LECA+CL E +
Sbjct: 74  SNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELE 133

Query: 140 HYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 181
            +ET+RLLP C H+FH  CID WL S ATCP+CR+ L A  N
Sbjct: 134 DHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSN 174

[Close]

BLAST of CSPI06G29970.1 vs. TAIR 10
Match: AT1G22500.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-22
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 54  VTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVD-RFGPSHGLKAAEIGAFPL 113
           + +++L+ +FF +   SVY+R  L+     D+       ++ R     GL A+ I  FP 
Sbjct: 41  IIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPT 100

Query: 114 VAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICR 173
             +S +K +++GK +LEC VCL EF+  ETLRL+P+C HVFHP CIDAWL S  TCP+CR
Sbjct: 101 FPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160

Query: 174 AQL--AAGENFSSE 185
           A L    GE+ SSE
Sbjct: 161 ANLVPVPGESVSSE 174

The following BLAST results are available for this feature:

BLAST of CSPI06G29970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXX9	3.4e-24	40.37	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q8LGA5	1.3e-23	41.57	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
Q84W40	3.2e-22	38.98	RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2	[more]
Q8W571	3.2e-22	40.74	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q9SK92	7.8e-21	44.03	E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 ...	[more]

BLAST of CSPI06G29970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIT7	1.4e-105	99.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 P...	[more]
A0A5A7T2D1	3.7e-58	90.48	E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1BTV2	2.6e-35	46.15	E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A2P6RQ73	6.6e-31	45.93	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
A0A2G9GP98	6.2e-29	40.40	RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C...	[more]

BLAST of CSPI06G29970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48724.1	2.9e-105	99.00	hypothetical protein Csa_004396 [Cucumis sativus]	[more]
KAA0036326.1	7.7e-58	90.48	E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3...	[more]
XP_022133016.1	5.3e-35	46.15	E3 ubiquitin-protein ligase ATL6-like [Momordica charantia]	[more]
XP_024185323.1	1.4e-30	45.93	RING-H2 finger protein ATL32 [Rosa chinensis] >PRQ48564.1 putative transcription...	[more]
GFP98694.1	2.3e-30	42.93	E3 ubiquitin-protein ligase atl6 [Phtheirospermum japonicum]	[more]

BLAST of CSPI06G29970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05200.1	2.4e-25	40.37	RING/U-box superfamily protein	[more]
AT5G27420.1	9.1e-25	41.57	carbon/nitrogen insensitive 1	[more]
AT1G72200.1	2.2e-23	38.98	RING/U-box superfamily protein	[more]
AT4G40070.1	2.2e-23	40.74	RING/U-box superfamily protein	[more]
AT1G22500.1	5.5e-22	44.03	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 130..171 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 129..172 e-value: 6.1E-12 score: 45.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 130..172 score: 12.297489
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 94..177 e-value: 8.5E-19 score: 69.0
None	No IPR available	PANTHER	PTHR14155:SF576	E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE	coord: 16..183
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 16..183
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 129..172 e-value: 1.52355E-15 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 129..176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G29970	CSPI06G29970	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G29970.1.cds1	CSPI06G29970.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G29970.1.utr5p1	CSPI06G29970.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G29970.1	CSPI06G29970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane