CSPI06G24620.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G24620.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transcription factor, TCP
Location	Chr6: 21996889 .. 21997661 (-)
Sequence length	678
RNA-Seq Expression	CSPI06G24620.1
Synteny	CSPI06G24620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTTAGAGAATAATGGAAAATTGAAAGGATCAAAACAGACACAGATAGGAGTCTAAAATTGCAGTATGGAGATTTTTTTTACCCTTTTTTCAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

mRNA sequence

ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

Coding sequence (CDS)

ATGGGATCCGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCCTCTCCGGTCACCATCACGCGCCAATCCCTCCTCCCTCGCAAGTCAAATACCCCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGCCGCGTCCGTATGCCCGCCCTCTGTGCTGCTCGCATCTTTCAGTTAACGCGTGAACTTGGTCATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCGATCTCCACTGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGGTTCAGCCAGTGACGGTGGGCGGCAGTGGACAGGGGATGTTCGCTATGCCACCGCCTAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTACCGCCACATGCCGTTCACAGCGCTGTTGTTGCAGCCGTCGACGGCGGAGGAGACGGAGGAGAGACAGGAGGAGGAGCTCTTCTTCGTACTCCTTCCTCTCGTCCTGTTCATGACTGGAATTTGTAAAGGGAAGAAGAAACTGTAA

Protein sequence

MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL*

Homology

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-35
Identity = 90/153 (58.82%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 53  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 112
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 113 TGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYS 172
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 173 AAGNDYRHMPFTALLLQP--STAEETEERQEEE 204
              N Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 11  PSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRV 70
           P S    SQP T    ++ +         +S +      PL  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQ-------EESAVVAAKKPPLKRASTKDRHTKVDGRGRRI 138

Query: 71  RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 130
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 131 SGRSVS 137
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-27
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 16  PHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPAL 75
           P S PP  S     S+++  T T++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 76  CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 135
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 136 S 137
           S
Sbjct: 154 S 139

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot
Match: Q9LQF0 (Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-26
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 22  TASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIF 81
           + S +    NS+  T+T        + TP +   SKDRHIKV+GRGRR+RMPA+CAAR+F
Sbjct: 29  SVSLTTTAPNSTTTTVT-------AAKTP-AKRPSKDRHIKVDGRGRRIRMPAICAARVF 88

Query: 82  QLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 137
           QLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 89  QLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-25
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 54  SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGT 113
           SS+KDRH KV GRGRR+RMPALCAARIFQLTRELGH+S+GETI+WLL+QAEPSIIAATG+
Sbjct: 76  SSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGS 135

Query: 114 GTVPSGPISTVSSAMASS 132
           GT+P+   S ++S+ A+S
Sbjct: 136 GTIPA---SALASSAATS 150

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.0e-120
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 226
           MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELFFVLLPLVLFMTGICKGKKKL 225

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.0e-105
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 296 MPFTALLLQPSTGEETEERQEEEVF 320

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.7e-104
Identity = 196/205 (95.61%), Postives = 201/205 (98.05%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF++PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVF 205

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.2e-87
Identity = 169/206 (82.04%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPL-SSSSSKDR 60
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +T+QS++PRKS   L SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 120
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYR 180
           PIST+S AMASS  SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEETEERQEEELF 206
           HMPFTALLLQPSTA+E EERQEEE+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVF 206

[Close]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 9.2e-82
Identity = 164/206 (79.61%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPL-SSSSSKDR 60
           MGS+I LHKFPSSSD HSQ   ASHSVV +NSSP  +T+QS++PRKS   L SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQSTAASHSVVRNNSSPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 120
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYR 180
           PIST++ AMASS  SVSCRVQ V V    QGMFAM  PSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTITPAMASSAPSVSCRVQSVGVAADEQGMFAM--PSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEETEERQEEELF 206
           HMPFTALLLQPSTA+E EERQE E+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEGEVF 204

[Close]

BLAST of CSPI06G24620.1 vs. NCBI nr
Match: XP_004143267.1 (transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein Csa_003031 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 6.9e-108
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPSTAEETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEETEERQEEEVF 205

[Close]

BLAST of CSPI06G24620.1 vs. NCBI nr
Match: XP_008462463.1 (PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 4.2e-105
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 296 MPFTALLLQPSTGEETEERQEEEVF 320

[Close]

BLAST of CSPI06G24620.1 vs. NCBI nr
Match: TYK07305.1 (transcription factor TCP11-like [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.5e-104
Identity = 196/205 (95.61%), Postives = 201/205 (98.05%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF++PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVF 205

[Close]

BLAST of CSPI06G24620.1 vs. NCBI nr
Match: XP_038882900.1 (transcription factor TCP11 [Benincasa hispida])

HSP 1 Score: 337.0 bits (863), Expect = 1.2e-88
Identity = 173/205 (84.39%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60
           MGS+IVLHKFPS+SD H+  PTASHSVVGSNSS   IT Q+++PRKS T L   SS+DRH
Sbjct: 1   MGSEIVLHKFPSTSD-HNSQPTASHSVVGSNSSLANITPQAVVPRKSTTSL---SSRDRH 60

Query: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120

Query: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180
           IST+S AMASS RS+SCRVQP+TVGG GQGMFAMPPPSCRLDLCQPVGMEYSA GNDYRH
Sbjct: 121 ISTLSPAMASSARSISCRVQPLTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAVGNDYRH 180

Query: 181 MPFTALLLQPSTAEETEERQEEELF 206
           MPFTALLLQPSTAEE EERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEEAEERQEEEVF 201

[Close]

BLAST of CSPI06G24620.1 vs. NCBI nr
Match: XP_023543697.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-87
Identity = 170/206 (82.52%), Postives = 184/206 (89.32%), Query Frame = 0


Query: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPL-SSSSSKDR 60
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +T+QS++PRKS   L SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 120
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYR 180
           PIST+S AMASSG SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 181 HMPFTALLLQPSTAEETEERQEEELF 206
           HMPFTALLLQPSTA+E EERQEEE+F
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVF 206

[Close]

BLAST of CSPI06G24620.1 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 151.4 bits (381), Expect = 8.9e-37
Identity = 90/153 (58.82%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 53  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 112
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 113 TGTVPSGPISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYS 172
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 173 AAGNDYRHMPFTALLLQP--STAEETEERQEEE 204
              N Y HMPFTA+LL+P  +TAE   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of CSPI06G24620.1 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 11  PSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRV 70
           P S    SQP T    ++ +         +S +      PL  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQ-------EESAVVAAKKPPLKRASTKDRHTKVDGRGRRI 138

Query: 71  RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 130
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 131 SGRSVS 137
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of CSPI06G24620.1 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-28
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 16  PHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPAL 75
           P S PP  S     S+++  T T++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 76  CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 135
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 136 S 137
           S
Sbjct: 154 S 139

[Close]

BLAST of CSPI06G24620.1 vs. TAIR 10
Match: AT1G35560.1 (TCP family transcription factor )

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-27
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 22  TASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIF 81
           + S +    NS+  T+T        + TP +   SKDRHIKV+GRGRR+RMPA+CAAR+F
Sbjct: 29  SVSLTTTAPNSTTTTVT-------AAKTP-AKRPSKDRHIKVDGRGRRIRMPAICAARVF 88

Query: 82  QLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 137
           QLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 89  QLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of CSPI06G24620.1 vs. TAIR 10
Match: AT2G45680.1 (TCP family transcription factor )

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-26
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 44  PRKSNTPLSSSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQA 103
           P  +  PL  +S+KDRH KV GRGRR+RMPA CAARIFQLTRELGH+S+GETI WLL  A
Sbjct: 63  PSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENA 122

Query: 104 EPSIIAATGTGTVPS 119
           EP+IIAATGTGTVP+
Sbjct: 123 EPAIIAATGTGTVPA 137

The following BLAST results are available for this feature:

BLAST of CSPI06G24620.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	1.2e-35	58.82	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q93Z00	1.6e-27	53.17	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9C518	4.8e-27	55.37	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]
Q9LQF0	6.9e-26	57.39	Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1	[more]
Q9LSD5	4.5e-25	74.36	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]

BLAST of CSPI06G24620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH86	1.0e-120	100.00	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A1S3CGZ3	2.0e-105	96.59	uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=...	[more]
A0A5D3C791	1.7e-104	95.61	Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1EK07	7.2e-87	82.04	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A6J1IR93	9.2e-82	79.61	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4...	[more]

BLAST of CSPI06G24620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143267.1	6.9e-108	99.51	transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein ...	[more]
XP_008462463.1	4.2e-105	96.59	PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo]	[more]
TYK07305.1	3.5e-104	95.61	transcription factor TCP11-like [Cucumis melo var. makuwa]	[more]
XP_038882900.1	1.2e-88	84.39	transcription factor TCP11 [Benincasa hispida]	[more]
XP_023543697.1	3.0e-87	82.52	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G24620.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	8.9e-37	58.82	TCP family transcription factor	[more]
AT3G47620.1	1.2e-28	53.17	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G58100.1	3.4e-28	55.37	TCP family transcription factor	[more]
AT1G35560.1	4.9e-27	57.39	TCP family transcription factor	[more]
AT2G45680.1	3.2e-26	73.33	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 55..153 e-value: 9.5E-29 score: 101.0
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 56..110 score: 26.536804
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 39..136
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 39..136

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G24620	CSPI06G24620	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G24620.1.cds2	CSPI06G24620.1.cds2	CDS
CSPI06G24620.1.cds1	CSPI06G24620.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G24620.1	CSPI06G24620.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity