CSPI06G20860.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G20860.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 18951315 .. 18952461 (+)
Sequence length	408
RNA-Seq Expression	CSPI06G20860.1
Synteny	CSPI06G20860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGGTCTCTCTCTCTCTCTATTATTATTCATTCATCTCTCTCTTTTAATATATTTCTTTTCAACTATTTCTCAAATAGGGTGGGAATTAATGAACTCTCCCTAAATAAACTAAAATTTTGTTATATTTTTTAAATATGTTAAACAATTTTATCATTTAGAACAACTTCTCTTTCTATGTTTATGCAATATAATATTTATTGCATGCAATGATAGGCAAATTTTCAAGGGAATATTTGAACTTTCGTTTAAGCTATATATTCTAGTTGATAGGGGTGGTTTTTTTTCGTATGTTATTGGTTCATTTACAGATTCATCAGATGGTATACTTTTGGGGAAAAAAAGTTAGAATTTAAGTTAAGTTAAATTTTAGTACTCACAGTTTCGAAAAACTATATAAATAATCTCTATCGCTAGTTAAAATTCTCGTATATTTAGTGTTTGTCTAAAAACTTTATCAAATCGTAAGAAGAAAATTTTAACTTTTTCCAAATGACAAGGACTAGATTTGCAACTTAACCTATGTTATAGTAAAAAATGTTGCATTTTATAATCTTTTAACGATTTTTGTACGTATAATTGATGTATTTTCTTGTAGTGTGAGTTTTTTTTTTTTTTTTTTTTTTTGTAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGTAAGTAAACATAAACACCATACACACAAAATCTTCATCATACCAAACACATTATTAATCAATTTATATAATTCAGTAACAGTTTTTCTTTTTTCTTTTTAAACTCTGTTTAGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAAAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

mRNA sequence

ATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAAAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Coding sequence (CDS)

ATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAAAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Protein sequence

MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN*

Homology

[Close]

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL
Match: A0A1S3BDD4 (uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.9e-56
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 60
           MA +RFACFLLVVLPVTSLSIIKFHQQEDKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 120
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 121 YNNADYLTYMHHPPKHN 136
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 137

[Close]

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL
Match: A0A1S3BDI1 (uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.3e-54
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 60
           MA +RFACFLLVVLPVTSLSIIKFHQQ DKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 120
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 121 YNNADYLTYMHHPPKHN 136
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 136

[Close]

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL
Match: A0A0A0KHA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 42  MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE 101
           MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE
Sbjct: 1   MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE 60

Query: 102 VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 136
           VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN
Sbjct: 61  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL
Match: A0A6J1GIZ1 (uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC111454657 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 77/138 (55.80%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQ-QEDKDVAE--DRVGSLKMELLRNNNIGGRRLGA 60
           M F+RFACFLLVVLP+TSLSI+KFH+  E KDVA+  D   S + EL+ +NNIGGRR   
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASREKELV-SNNIGGRRRLE 60

Query: 61  AKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTV 120
            KE M +E SKS          S M  SS+ N ENGKKK K         KK+G +GS++
Sbjct: 61  VKEGMPLERSKS----------SKMAVSSSFNGENGKKKKK---------KKLG-NGSSL 117

Query: 121 VYNNADYLTYMHHPPKHN 136
           VY NADYLT+MHHPPKHN
Sbjct: 121 VYENADYLTHMHHPPKHN 117

[Close]

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL
Match: A0A6J1KPF0 (uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 74/138 (53.62%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQ-QEDKDVAE--DRVGSLKMELLRNNNIGGRRLGA 60
           M F+RFACFLLVVLP+TSLSI+KFH+  E KDVA+  D   S + ELL +NNIGGRR   
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELL-SNNIGGRRRLE 60

Query: 61  AKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTV 120
            +E M +E+SKS          S M   S+ N ENGKKK KK             +GS++
Sbjct: 61  VQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG-----------NGSSL 116

Query: 121 VYNNADYLTYMHHPPKHN 136
           VY NADYLT+MHHPPKHN
Sbjct: 121 VYENADYLTHMHHPPKHN 116

[Close]

BLAST of CSPI06G20860.1 vs. NCBI nr
Match: XP_031743130.1 (uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60
           MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE
Sbjct: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60

Query: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120
           FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN
Sbjct: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120

Query: 121 NADYLTYMHHPPKHN 136
           NADYLTYMHHPPKHN
Sbjct: 121 NADYLTYMHHPPKHN 135

[Close]

BLAST of CSPI06G20860.1 vs. NCBI nr
Match: KGN48024.2 (hypothetical protein Csa_003208, partial [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60
           MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE
Sbjct: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 99

Query: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120
           FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN
Sbjct: 100 FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 159

Query: 121 NADYLTYMHHPPKHN 136
           NADYLTYMHHPPKHN
Sbjct: 160 NADYLTYMHHPPKHN 174

[Close]

BLAST of CSPI06G20860.1 vs. NCBI nr
Match: XP_031743131.1 (uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60
           MAFLRFACFLLVVLPVTSLSIIKFHQQ DKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE
Sbjct: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQ-DKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60

Query: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120
           FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN
Sbjct: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120

Query: 121 NADYLTYMHHPPKHN 136
           NADYLTYMHHPPKHN
Sbjct: 121 NADYLTYMHHPPKHN 134

[Close]

BLAST of CSPI06G20860.1 vs. NCBI nr
Match: XP_008445410.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 60
           MA +RFACFLLVVLPVTSLSIIKFHQQEDKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 120
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 121 YNNADYLTYMHHPPKHN 136
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 137

[Close]

BLAST of CSPI06G20860.1 vs. NCBI nr
Match: XP_008445411.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 60
           MA +RFACFLLVVLPVTSLSIIKFHQQ DKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 120
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 121 YNNADYLTYMHHPPKHN 136
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 136

The following BLAST results are available for this feature:

BLAST of CSPI06G20860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G20860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BDD4	8.9e-56	90.51	uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BDI1	8.3e-54	89.78	uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KHA3	3.3e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1	[more]
A0A6J1GIZ1	4.9e-22	55.80	uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC1114546...	[more]
A0A6J1KPF0	1.2e-20	53.62	uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054...	[more]

BLAST of CSPI06G20860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743130.1	1.3e-64	100.00	uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus]	[more]
KGN48024.2	1.3e-64	100.00	hypothetical protein Csa_003208, partial [Cucumis sativus]	[more]
XP_031743131.1	1.2e-62	99.26	uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus]	[more]
XP_008445410.1	1.8e-55	90.51	PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo]	[more]
XP_008445411.1	1.7e-53	89.78	PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo]	[more]

BLAST of CSPI06G20860.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G20860	CSPI06G20860	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G20860.1.cds1	CSPI06G20860.1.cds1	CDS
CSPI06G20860.1.cds2	CSPI06G20860.1.cds2	CDS
CSPI06G20860.1.cds3	CSPI06G20860.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G20860.1	CSPI06G20860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0004722	protein serine/threonine phosphatase activity