CSPI06G19030.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G19030.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Damaged dna-binding 2, putative isoform 1
Location	Chr6: 17227358 .. 17228869 (+)
Sequence length	1366
RNA-Seq Expression	CSPI06G19030.1
Synteny	CSPI06G19030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAAGTGATGAATGGAAGCCCGGCAGATGAGGATAAGGCCTTGGGCTTTCCTTTTCGGAGTTCTTTATCCTTTTCATTAACTCTCTCATCCTAGATGATATTACTCTTCTCTTCTCCTTCATTAATTGTCTACAAATCCATAATTTTCTATATTTAAATTCTTGTCTCTTCTTCTCTACACAATCTCTCCACTCCCATCGATATATCAATGCCAAACTATATTTCTTAATCTCATCTTCATTTTAAAACTATAATCTTCTTCCTTCTCTATCTCATTTGAATCACTCAATTATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGTTAGCGATTTTTTTTTTTTTTGGGTTCTTCGTAATCTTCTTCTTTTCTATGGTTTCAAGATTTAGAGCAACTTGATCTATCGCTTGTTGATTTCGAGATTCAGTTGAGTTTTGACAAATTATATCATCTTGTGAATGTTATGCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAGCTAGCGTAGGGAAGGGTTTTCCCATGGCGTCCATGGAAGCTAAATCACCATGAAAGACTAACTTAACCTCTTGTGAAACCGAGTTTCATCGAATTGGTTTCTGACGAATAACTCATTTTCTTTCAAATTTCCCACGATCTTAGGAACTCTGTTTTGATTTCCTTTTTGTATGAATGTATGTAAAGTGAAAAGAGAAAAAGCATAGCAGTTCATATTTTGAATCGATTTCTGTTTGTTCATACAATTTGAATCAGCAAATGGAGAGAGCATGAGAGTTTCTTTTTTTAAATAAAGTAATGGGAAAAATACAGATAAAAGTTTGGGGCAAACTGAAAAGGAATTGGTAATGAATGTGTCAATGTCATATAAAGCTGATGGACTAA

mRNA sequence

AATAAAGTGATGAATGGAAGCCCGGCAGATGAGGATAAGGCCTTGGGCTTTCCTTTTCGGAGTTCTTTATCCTTTTCATTAACTCTCTCATCCTAGATGATATTACTCTTCTCTTCTCCTTCATTAATTGTCTACAAATCCATAATTTTCTATATTTAAATTCTTGTCTCTTCTTCTCTACACAATCTCTCCACTCCCATCGATATATCAATGCCAAACTATATTTCTTAATCTCATCTTCATTTTAAAACTATAATCTTCTTCCTTCTCTATCTCATTTGAATCACTCAATTATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAGCTAGCGTAGGGAAGGGTTTTCCCATGGCGTCCATGGAAGCTAAATCACCATGAAAGACTAACTTAACCTCTTGTGAAACCGAGTTTCATCGAATTGGTTTCTGACGAATAACTCATTTTCTTTCAAATTTCCCACGATCTTAGGAACTCTGTTTTGATTTCCTTTTTGTATGAATGTATGTAAAGTGAAAAGAGAAAAAGCATAGCAGTTCATATTTTGAATCGATTTCTGTTTGTTCATACAATTTGAATCAGCAAATGGAGAGAGCATGAGAGTTTCTTTTTTTAAATAAAGTAATGGGAAAAATACAGATAAAAGTTTGGGGCAAACTGAAAAGGAATTGGTAATGAATGTGTCAATGTCATATAAAGCTGATGGACTAA

Coding sequence (CDS)

ATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAG

Protein sequence

MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ*

Homology

[Close]

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL
Match: A0A0A0KFI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G361410 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.2e-117
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSSSSIGE 60
           MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRC+SSSSSSIGE
Sbjct: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCTSSSSSSIGE 60

Query: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120
           NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS
Sbjct: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120

Query: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180
           SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN
Sbjct: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180

Query: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 229

[Close]

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL
Match: A0A5A7VFP0 (Damaged dna-binding 2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00100 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.6e-108
Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MSIALETNT-----VFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+NT     VFSQ GLP YCSVLNTTGIIPVVRREAA+ADAVAP DVDRCSSSSS
Sbjct: 1   MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAPEDVDRCSSSSS 60

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDNDDGEDNEAESSY+GPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIK+IAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE
Sbjct: 121 LADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            HKNNDLNSI+PPPT IRPPL+PNGR SRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 SHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 234

[Close]

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL
Match: A0A1S3BCZ8 (uncharacterized protein LOC103488525 OS=Cucumis melo OX=3656 GN=LOC103488525 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.6e-108
Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MSIALETNT-----VFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+NT     VFSQ GLP YCSVLNTTGIIPVVRREAA+ADAVAP DVDRCSSSSS
Sbjct: 36  MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAPEDVDRCSSSSS 95

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDNDDGEDNEAESSY+GPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 96  SSIGENSGFSVRSSDNDDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 155

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIK+IAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE
Sbjct: 156 LADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 215

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            HKNNDLNSI+PPPT IRPPL+PNGR SRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 216 SHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 269

[Close]

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL
Match: A0A6J1HF10 (uncharacterized protein LOC111462922 OS=Cucurbita moschata OX=3662 GN=LOC111462922 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.3e-88
Identity = 191/235 (81.28%), Postives = 202/235 (85.96%), Query Frame = 0


Query: 1   MSIALETN-----TVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPAD-VDRCSSSS 60
           MSIALE+N     +VFSQ  LPSYCSVLNTTG+IPVVRREA + D VAPA+ VDRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFT 120
           SSSIGENS FSVRS ++DDGEDNEAESSYK  LGMESLEEVLPIRRGISNFYNGKSKSFT
Sbjct: 61  SSSIGENSDFSVRSVNDDDGEDNEAESSYKESLGMESLEEVLPIRRGISNFYNGKSKSFT 120

Query: 121 SLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSS 180
           SL DASS+SSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISS  SSLALAV +SSS
Sbjct: 121 SLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSSS 180

Query: 181 EIHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           E     DLNS L P   IRPPL+P GR SR NSGSAVP LCKFPTWRSYS+ANIQ
Sbjct: 181 ERQSGEDLNSRLSP--TIRPPLHPKGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL
Match: A0A6J1K8D9 (uncharacterized protein LOC111492074 OS=Cucurbita maxima OX=3661 GN=LOC111492074 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.3e-87
Identity = 190/235 (80.85%), Postives = 202/235 (85.96%), Query Frame = 0


Query: 1   MSIALETN-----TVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPAD-VDRCSSSS 60
           MSIALE+N     +VFSQ  LPSYCSVLNTTG+IPVVRREA + D VAPA+ VDRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFT 120
           SSSIGENS FSVRS ++DDGEDNEAESSYK  LGMESLEEVL IRRGISNFYNGKSKSFT
Sbjct: 61  SSSIGENSDFSVRSVNDDDGEDNEAESSYKESLGMESLEEVLSIRRGISNFYNGKSKSFT 120

Query: 121 SLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSS 180
           SL DASS+SSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISS  SSLALAV +SSS
Sbjct: 121 SLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSSS 180

Query: 181 EIHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           E    + LNS L P   IRPPL+PNGR SR NSGSAVP LCKFPTWRSYS+ANIQ
Sbjct: 181 ERKSGDVLNSRLSP--TIRPPLHPNGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of CSPI06G19030.1 vs. NCBI nr
Match: XP_004144215.1 (uncharacterized protein LOC101211014 [Cucumis sativus] >KGN47579.1 hypothetical protein Csa_019031 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSSSSIGE 60
           MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRC+SSSSSSIGE
Sbjct: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCTSSSSSSIGE 60

Query: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120
           NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS
Sbjct: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120

Query: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180
           SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN
Sbjct: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180

Query: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 229

[Close]

BLAST of CSPI06G19030.1 vs. NCBI nr
Match: KAA0064705.1 (Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa] >TYK00723.1 Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 5.4e-108
Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MSIALETNT-----VFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+NT     VFSQ GLP YCSVLNTTGIIPVVRREAA+ADAVAP DVDRCSSSSS
Sbjct: 1   MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAPEDVDRCSSSSS 60

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDNDDGEDNEAESSY+GPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIK+IAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE
Sbjct: 121 LADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            HKNNDLNSI+PPPT IRPPL+PNGR SRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 SHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 234

[Close]

BLAST of CSPI06G19030.1 vs. NCBI nr
Match: XP_008445543.1 (PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 5.4e-108
Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MSIALETNT-----VFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+NT     VFSQ GLP YCSVLNTTGIIPVVRREAA+ADAVAP DVDRCSSSSS
Sbjct: 36  MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAPEDVDRCSSSSS 95

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDNDDGEDNEAESSY+GPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 96  SSIGENSGFSVRSSDNDDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 155

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIK+IAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE
Sbjct: 156 LADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 215

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            HKNNDLNSI+PPPT IRPPL+PNGR SRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 216 SHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 269

[Close]

BLAST of CSPI06G19030.1 vs. NCBI nr
Match: XP_038883984.1 (uncharacterized protein LOC120074946 [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 8.9e-95
Identity = 198/234 (84.62%), Postives = 208/234 (88.89%), Query Frame = 0


Query: 1   MSIALETN-----TVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+N     +VFSQ GLPSYCSVLNTTG IPVVR+EAA       A+VD CSSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQSGLPSYCSVLNTTGRIPVVRQEAAAVGDAVAAEVDGCSSSSS 60

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDND+GEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 61  SSIGENSGFSVRSSDNDNGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPII+SSRSSLALAVVLSSSE
Sbjct: 121 LADASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIINSSRSSLALAVVLSSSE 180

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            H +NDLNS L PP  IRPPL+PNGR SR NSGS VP LCKFP+WRSYS+ANIQ
Sbjct: 181 SHNSNDLNSRLSPP--IRPPLHPNGRASRSNSGSPVPLLCKFPSWRSYSLANIQ 232

[Close]

BLAST of CSPI06G19030.1 vs. NCBI nr
Match: XP_022962518.1 (uncharacterized protein LOC111462922 [Cucurbita moschata] >KAG6598596.1 hypothetical protein SDJN03_08374, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029529.1 hypothetical protein SDJN02_07868 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.1 bits (858), Expect = 4.7e-88
Identity = 191/235 (81.28%), Postives = 202/235 (85.96%), Query Frame = 0


Query: 1   MSIALETN-----TVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPAD-VDRCSSSS 60
           MSIALE+N     +VFSQ  LPSYCSVLNTTG+IPVVRREA + D VAPA+ VDRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFT 120
           SSSIGENS FSVRS ++DDGEDNEAESSYK  LGMESLEEVLPIRRGISNFYNGKSKSFT
Sbjct: 61  SSSIGENSDFSVRSVNDDDGEDNEAESSYKESLGMESLEEVLPIRRGISNFYNGKSKSFT 120

Query: 121 SLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSS 180
           SL DASS+SSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISS  SSLALAV +SSS
Sbjct: 121 SLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSSS 180

Query: 181 EIHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           E     DLNS L P   IRPPL+P GR SR NSGSAVP LCKFPTWRSYS+ANIQ
Sbjct: 181 ERQSGEDLNSRLSP--TIRPPLHPKGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of CSPI06G19030.1 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-30
Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 0


Query: 51  SSSSSSSIGENSGFSVRSSDN--DDGEDNEAESSYKGPLG-MESLEEVLPIRRGISNFYN 110
           SSS+SSSIG NS    +SS++  DD  +NE ES YKGPL  MESLE+VLP+R+GIS +Y+
Sbjct: 37  SSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKGPLEMMESLEQVLPVRKGISKYYS 96

Query: 111 GKSKSFTSLV-----DASSSSSIKDIAKPENAFSRKRRNLLASNL-------IAGGISKR 170
           GKSKSFT+L        +SSSS+KD+AKPEN +SR+RRNLL   +         GGISK+
Sbjct: 97  GKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQIWENNKTTPRGGISKK 156

Query: 171 PIISSSRSSLALAVVLSSSEI------------HKNNDLNSILPPPTLIR--------PP 228
            ++SSSRS+L LA+ +++  +              ++   S  PP  L          PP
Sbjct: 157 HVMSSSRSALTLAMAVAAGVMTGEGSSSGGDSSPGSSPTTSGSPPRQLHHHQHQMKKLPP 216

[Close]

BLAST of CSPI06G19030.1 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLG-MESLEEVLPIRRGISNFYNGK 110
           SS+SS SIGEN       SD+D+G +NE ESSY GPL  MESLEE LPI+R IS FY GK
Sbjct: 23  SSTSSDSIGEN-------SDDDEGGENEIESSYNGPLDMMESLEEALPIKRAISKFYKGK 82

Query: 111 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIA-GGISKRPIIS 160
           SKSF SL + +SS  +KD+ KPEN +SR+RRNLL+  + + GGISK+P  S
Sbjct: 83  SKSFMSLSE-TSSLPVKDLTKPENLYSRRRRNLLSHRICSRGGISKKPFKS 125

[Close]

BLAST of CSPI06G19030.1 vs. TAIR 10
Match: AT2G24550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-11
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLG--MESLEEVLPIRRGISNFYNG 110
           SS SSSSIGE+      S + ++ E+++A S  +G L     SLE+ LPI+RG+SN Y G
Sbjct: 64  SSDSSSSIGES------SENEEEEEEDDAVSCQRGTLDSFSSSLEDSLPIKRGLSNHYVG 123

Query: 111 KSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGIS 154
           KSKSF +L++A+S +  KD+ K EN F+++RR ++A+ L   G S
Sbjct: 124 KSKSFGNLMEAASKA--KDLEKVENPFNKRRRLVIANKLRRRGRS 160

[Close]

BLAST of CSPI06G19030.1 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 33  RREAALADAVAPADVD------RCSSS----SSSSIGENSGFSVRSSDNDDGEDNEAESS 92
           R      D   PA +       RC  S    SSSS+GE       +S+N++ ED+   SS
Sbjct: 12  RSSVTTHDQAVPASLSSRIGLRRCGRSPPPESSSSVGE-------TSENEEDEDDAVSSS 71

Query: 93  YKGPLG--MESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRR 152
               L     SLE+ LPI+RG+SN Y GKSKSF +L++AS+++   D+ K E+  +++RR
Sbjct: 72  QGRWLNSFSSSLEDSLPIKRGLSNHYIGKSKSFGNLMEASNTN---DLVKVESPLNKRRR 131

Query: 153 NLLASNL-IAGGISKRPIIS--SSRSSLALAVVLSSSEIHKNND 182
            L+A+ L     +S   I +  +  S   LA+  S +E HK ND
Sbjct: 132 LLIANKLRRRSSLSSFSIYTKINPNSMPLLALQESDNEDHKLND 165

[Close]

BLAST of CSPI06G19030.1 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 52  SSSSSSIGE--NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGK 111
           SS SSSIG   +S      S+N++ + +  E   +G   M SLE+ LP +RG+SN Y GK
Sbjct: 59  SSDSSSIGTPGDSEEDEEESENENDDVSSKELGLRGLASMSSLEDSLPSKRGLSNHYKGK 118

Query: 112 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNL 148
           SKSF +L       S+K++AK EN  +++RR  + + L
Sbjct: 119 SKSFGNL---GEIGSVKEVAKQENPLNKRRRLQICNKL 153

The following BLAST results are available for this feature:

BLAST of CSPI06G19030.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G19030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFI7	5.2e-117	99.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G361410 PE=4 SV=1	[more]
A0A5A7VFP0	2.6e-108	92.31	Damaged dna-binding 2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BCZ8	2.6e-108	92.31	uncharacterized protein LOC103488525 OS=Cucumis melo OX=3656 GN=LOC103488525 PE=...	[more]
A0A6J1HF10	2.3e-88	81.28	uncharacterized protein LOC111462922 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A6J1K8D9	4.3e-87	80.85	uncharacterized protein LOC111492074 OS=Cucurbita maxima OX=3661 GN=LOC111492074...	[more]

BLAST of CSPI06G19030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144215.1	1.1e-116	99.56	uncharacterized protein LOC101211014 [Cucumis sativus] >KGN47579.1 hypothetical ...	[more]
KAA0064705.1	5.4e-108	92.31	Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa] >TYK00723.1...	[more]
XP_008445543.1	5.4e-108	92.31	PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo]	[more]
XP_038883984.1	8.9e-95	84.62	uncharacterized protein LOC120074946 [Benincasa hispida]	[more]
XP_022962518.1	4.7e-88	81.28	uncharacterized protein LOC111462922 [Cucurbita moschata] >KAG6598596.1 hypothet...	[more]

BLAST of CSPI06G19030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21940.1	6.3e-30	45.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G43850.1	1.3e-22	59.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24550.1	6.5e-11	44.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G31510.1	1.0e-08	35.98	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G24890.1	5.2e-08	39.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..68
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 37..229
None	No IPR available	PANTHER	PTHR33172:SF37	MYOSIN LIGHT CHAIN KINASE DDB_G0279831 ISOFORM X1-RELATED	coord: 37..229

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G19030	CSPI06G19030	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G19030.1.utr5p1	CSPI06G19030.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G19030.1.cds1	CSPI06G19030.1.cds1	CDS
CSPI06G19030.1.cds2	CSPI06G19030.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G19030.1.utr3p1	CSPI06G19030.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G19030.1	CSPI06G19030.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding