CSPI06G18800.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G18800.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Chr6: 17040872 .. 17043173 (-)
Sequence length	450
RNA-Seq Expression	CSPI06G18800.1
Synteny	CSPI06G18800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTTGTTTCATTCCTTTGTCGCTGCTTTCATTCCTCCATTCTTCACCTTCCCTCTTCCTCCCTTGAGGCAAAGAAAAGAAGGTCTCGGGGTTCAGCTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAACACGAGTGGGCTTCCGTCTCCTTCTTCTCCTCTACCTCCAATATTACATCCTCCAGGTACCCTTCTTCTTTTTTTCAGATTCTTAATTTTCGCTCTTTTTTTACGTTTTCTTTTCAATTGGGTCGGTTTTCATCGATCACCTACGCCACGCCCCTTCTGTTCCTTTTATGCTCATTTACAGGATTCGGATCATTGCACATGTTCGTTGTTGTGTCACCAATTTGTGCGAATCTGTTATGTTTGTTTTAGGTCATTAGAATTTGAAATTTGTTGAGATCGTTTTCCGATTGTTGATTTCTTATATGCTGGGTTGGTGTTGTTTATTGGAAAAGGGGAGGGATTTTGGTTCTTGAAACGGAATTCTCATAAGCATAGGTCTAGATGCATCGGATGATGTGCTATTCTAATTGTTCGATTGAATTTCTTTACGTTTTCAAGAAGCATGCTCGCGAGTCCCTTTAGTTGTAGCTTGGGAAATTTCATGTACTTTCCTGCTTAGCATCAAATCCTATGCCTATATTCCTTTGGTCGCCAGAGGGACGTTTGTGCTATGATCAATGAGTTCCTCTTCAATCCACCTGGAGGTTGTGTATACGATCATGTGGGTTTTGGGGGGTGATCGGAATGGTAGGATCTTAGAGGGCTGGTGAAGGACTCTATCGAGATTTATTCCCTTCTTCGTTTATATGTTTTCTTGCCGGCTTCAATTTCGAAGACCTGTTGCAGTTATTCCTTGGGTGTTATTTTGCTTAGTTGGGGTTCATTCTTATAGGATTGTGCCTTTTTTGTGGGCTGGTTTATTTGTATGCCCACATATTCTTTCGTTCTTTCTCCAAAAAAGCTGTTTCTTCTATATAGGAAAAAAATTCAATGCTTATAGGATATTGAAAAATACCCATGATGGTGGAAATGAATAAGATTATAAGTATCAGTTGATAGAGTTCTGTCTTTTTATCTTGCCTTGATTGCTAATTGCACTCCACTGAAGGAAAATATTTTGGAAATTGCACCATAAAATCTTCAATCAGAAATTTTATTCTCCAAAAGAAAAAGGAAAACCACATGTGTTTCTGTTTTAGCTTCCTATTATATATCACTAGCGAGTGTAGTTCTACTTTCAAATAACAAGGTCTTGAGAATACGTTTTCTTGTTTGTAGTTGTAAATTTTTCTCGTGTAAATTGGAAAAATAACTTTTTATATTTTCTTAGCACGATGTTAGATCAATGACATTTGCTTGTTTTAGGTTCAAAAGAATGTCATGTCAGTGCATAAAATTGGAAGTTGGAAGTGCAAGTTTATGTATGATAGGTGATTGATAGGAACCTAATTTGCATTTTTGCTTTGAAATAGTTCATTATTGATTAAGAACTTTCACTTATGCCAACCGTACATCTTTTCATCTTATGAGGCAATATACCCAATTAGATATCGGCAGGCTTGACTTTGTGCAACTGTGCCTATCAAAAGAATAACACATTCTTTTGATAGAAACAAATTGCTTTCATCAAGCAAAAAATGAAAGAATTCTAAGGCACATAAGGAGAAAAAATCAAGCCCACACAAACCATATTAAAGTATGAAAGGAGGATCAACTAAGTAAAATAGTGTCTAAAGAATAATTACAAAAGATCCTCGAAGTTAAAGTCCAACGAGAAACATGAAACCTAGCTAAGAACTAAATTCCACCCAAAGATCTCATAACAATCCATAAATCCATAAAAAAAAGTCTTTCTTTCTCACTGAAAGGCGGATGGAGGAGGGATGTCCCTAACACATTTCTTTATTGAAAGGTTTATGTATGAATTCTCTCTTCTGTTAGCAAGAAGACTGAATTATCTGTCTGCGACGGTAATAGATGTGATATGACTTCTAATGTAACTGTTGGTTGATGTTGTTCTGGATGCAGGGTGGATGTAGTGATTTTTGTAATATGGGAACTCATAATACTATCGTTCCTGGTGTTCTCGGCAGTTTCTTTATATTTTCGGCATATGCAGTTGGCATTTATTTTAGTATGCATTACGATGTTGTTGCTTCTATGCATGAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATG

mRNA sequence

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTTGTTTCATTCCTTTGTCGCTGCTTTCATTCCTCCATTCTTCACCTTCCCTCTTCCTCCCTTGAGGCAAAGAAAAGAAGGTCTCGGGGTTCAGCTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAACACGAGTGGGCTTCCGTCTCCTTCTTCTCCTCTACCTCCAATATTACATCCTCCAGGGTGGATGTAGTGATTTTTGTAATATGGGAACTCATAATACTATCGTTCCTGGTGTTCTCGGCAGTTTCTTTATATTTTCGGCATATGCAGTTGGCATTTATTTTAGTATGCATTACGATGTTGTTGCTTCTATGCATGAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATG

Coding sequence (CDS)

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTTGTTTCATTCCTTTGTCGCTGCTTTCATTCCTCCATTCTTCACCTTCCCTCTTCCTCCCTTGAGGCAAAGAAAAGAAGGTCTCGGGGTTCAGCTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAACACGAGTGGGCTTCCGTCTCCTTCTTCTCCTCTACCTCCAATATTACATCCTCCAGGGTGGATGTAGTGATTTTTGTAATATGGGAACTCATAATACTATCGTTCCTGGTGTTCTCGGCAGTTTCTTTATATTTTCGGCATATGCAGTTGGCATTTATTTTAGTATGCATTACGATGTTGTTGCTTCTATGCATGAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATG

Protein sequence

MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM

Homology

[Close]

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL
Match: A0A0A0KIH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI
Sbjct: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL
Match: A0A1S3CMK7 (uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502637 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLV FLCRCF SSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI
Sbjct: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL
Match: A0A6J1GHS6 (uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC111454282 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.9e-52
Identity = 127/149 (85.23%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 2   LSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIR 61
           LSLNSISQFL+ F+  CF SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIR
Sbjct: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIR 79

Query: 62  SKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT 121
           SKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT
Sbjct: 80  SKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCIT 139

Query: 122 MLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           MLLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 140 MLLLICMKVTKQVRLARKKKRRMLLPLSM 166

[Close]

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL
Match: A0A6J1G568 (uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC111450786 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.7e-50
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLV F+C C    ILH   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKH+WAS SFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL F+LVCI
Sbjct: 61  RSKHDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Sbjct: 121 TMLLIVCMKVTKQMRLARKKKRRMLLPLSM 144

[Close]

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL
Match: A0A6J1KBR2 (uncharacterized protein LOC111494024 OS=Cucurbita maxima OX=3661 GN=LOC111494024 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 121/150 (80.67%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLV F+C C    I H   S    +K  SRG  +AMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVPFICGCVKFPIFHRRPS----EKPTSRG--AAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKH+WAS SFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQL F+L+CI
Sbjct: 61  RSKHDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLICI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Sbjct: 121 TMLLIVCMKVTKQMRLARKKKRRMLLPLSM 144

[Close]

BLAST of CSPI06G18800.1 vs. NCBI nr
Match: XP_004144225.1 (uncharacterized protein LOC101213289 [Cucumis sativus] >KGN47556.1 hypothetical protein Csa_018918 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI
Sbjct: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CSPI06G18800.1 vs. NCBI nr
Match: XP_008464874.1 (PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLV FLCRCF SSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI
Sbjct: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CSPI06G18800.1 vs. NCBI nr
Match: XP_038884232.1 (uncharacterized protein LOC120075129 [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 140/150 (93.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60
           MLSLNSISQFLV F+CRC  SSILH   SSLEAKKR+SRG  SAMITRSNLVEQLREYQI
Sbjct: 1   MLSLNSISQFLVRFVCRCVKSSILHPRPSSLEAKKRKSRG--SAMITRSNLVEQLREYQI 60

Query: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120
           RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI
Sbjct: 61  RSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCI 120

Query: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           TMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 TMLLLLCMKVTKQVRLARKKKRRMLLPLSM 148

[Close]

BLAST of CSPI06G18800.1 vs. NCBI nr
Match: XP_022951473.1 (uncharacterized protein LOC111454282 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 6.1e-52
Identity = 127/149 (85.23%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 2   LSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIR 61
           LSLNSISQFL+ F+  CF SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIR
Sbjct: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIR 79

Query: 62  SKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT 121
           SKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT
Sbjct: 80  SKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCIT 139

Query: 122 MLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           MLLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 140 MLLLICMKVTKQVRLARKKKRRMLLPLSM 166

[Close]

BLAST of CSPI06G18800.1 vs. NCBI nr
Match: KAG7020712.1 (hypothetical protein SDJN02_17399 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-51
Identity = 126/149 (84.56%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 2   LSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIR 61
           LSLNSISQFL+  +  CF SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIR
Sbjct: 24  LSLNSISQFLLHIVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIR 83

Query: 62  SKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT 121
           SKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT
Sbjct: 84  SKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCIT 143

Query: 122 MLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           MLLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 144 MLLLICMKVTKQVRLARKKKRRMLLPLSM 170

[Close]

BLAST of CSPI06G18800.1 vs. TAIR 10
Match: AT1G20460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 170.6 bits (431), Expect = 9.4e-43
Identity = 92/106 (86.79%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 45  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAV 104
           MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSRVDVV+FVIWEL+IL+F VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFFVFSAV 60

Query: 105 SLYFRHMQLAFILVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           SLYF+ +QLAFILVC+T+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 61  SLYFKRLQLAFILVCVTLLLLICMKVTKQVRLARKKKRRMLLPLSM 106

[Close]

BLAST of CSPI06G18800.1 vs. TAIR 10
Match: AT1G76185.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 3.9e-41
Identity = 89/106 (83.96%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 45  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAV 104
           MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSRVDVV+FVIWEL++L+ +VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVMLALVVFSAV 60

Query: 105 SLYFRHMQLAFILVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 151
           SLYFR +QLAFIL+C+T+LLLLCMK+TKQVR ARKKKRRMLLPLSM
Sbjct: 61  SLYFRRLQLAFILLCVTLLLLLCMKITKQVRHARKKKRRMLLPLSM 106

The following BLAST results are available for this feature:

BLAST of CSPI06G18800.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G18800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIH9	8.5e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1	[more]
A0A1S3CMK7	2.7e-66	98.67	uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GHS6	2.9e-52	85.23	uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A6J1G568	4.7e-50	82.00	uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KBR2	1.8e-49	80.67	uncharacterized protein LOC111494024 OS=Cucurbita maxima OX=3661 GN=LOC111494024...	[more]

BLAST of CSPI06G18800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144225.1	1.8e-67	100.00	uncharacterized protein LOC101213289 [Cucumis sativus] >KGN47556.1 hypothetical ...	[more]
XP_008464874.1	5.7e-66	98.67	PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]	[more]
XP_038884232.1	1.4e-59	93.33	uncharacterized protein LOC120075129 [Benincasa hispida]	[more]
XP_022951473.1	6.1e-52	85.23	uncharacterized protein LOC111454282 [Cucurbita moschata]	[more]
KAG7020712.1	3.0e-51	84.56	hypothetical protein SDJN02_17399 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CSPI06G18800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20460.1	9.4e-43	86.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G76185.1	3.9e-41	83.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34936	EXPRESSED PROTEIN	coord: 45..150
None	No IPR available	PANTHER	PTHR34936:SF10	SUBFAMILY NOT NAMED	coord: 45..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G18800	CSPI06G18800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G18800.mrna.cds.2	CSPI06G18800.mrna.cds.2	CDS
CSPI06G18800.mrna.cds.1	CSPI06G18800.mrna.cds.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G18800.1	CSPI06G18800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane