CSPI06G12400.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G12400.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 10842942 .. 10843205 (+)
Sequence length	264
RNA-Seq Expression	CSPI06G12400.1
Synteny	CSPI06G12400.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGAGAGAGAGTGGATTGGGAAAAAAAAGAAGAAGAAGAGAAGGGGTTTTAGCGTTGGGGAAGTGAATGAGGAAAGAGAGGGAAAAGGAACAGTAGATAAAGGAAATCACGAGGAATTTGAGAGAGACAACCACGCCAAAGCCAAAGCCAAAGCCAAAGCCAATGAAGCTACAAAACGAGAGTCTAACGCTATGACTAAAGACTCGACTTCAGGTCTCTGCTTTTCTATTCCCTTTACGGAGCTCCAAAAATGGTAG

mRNA sequence

ATGGAAAGGGAGAGAGAGTGGATTGGGAAAAAAAAGAAGAAGAAGAGAAGGGGTTTTAGCGTTGGGGAAGTGAATGAGGAAAGAGAGGGAAAAGGAACAGTAGATAAAGGAAATCACGAGGAATTTGAGAGAGACAACCACGCCAAAGCCAAAGCCAAAGCCAAAGCCAATGAAGCTACAAAACGAGAGTCTAACGCTATGACTAAAGACTCGACTTCAGGTCTCTGCTTTTCTATTCCCTTTACGGAGCTCCAAAAATGGTAG

Coding sequence (CDS)

ATGGAAAGGGAGAGAGAGTGGATTGGGAAAAAAAAGAAGAAGAAGAGAAGGGGTTTTAGCGTTGGGGAAGTGAATGAGGAAAGAGAGGGAAAAGGAACAGTAGATAAAGGAAATCACGAGGAATTTGAGAGAGACAACCACGCCAAAGCCAAAGCCAAAGCCAAAGCCAATGAAGCTACAAAACGAGAGTCTAACGCTATGACTAAAGACTCGACTTCAGGTCTCTGCTTTTCTATTCCCTTTACGGAGCTCCAAAAATGGTAG

Protein sequence

MEREREWIGKKKKKKRRGFSVGEVNEEREGKGTVDKGNHEEFERDNHAKAKAKAKANEATKRESNAMTKDSTSGLCFSIPFTELQKW*

Homology

The following BLAST results are available for this feature:

BLAST of CSPI06G12400.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G12400.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G12400.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G12400.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G12400	CSPI06G12400	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G12400.1.cds1	CSPI06G12400.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G12400.1	CSPI06G12400.1-protein	polypeptide