CSPI06G04920.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G04920.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr6: 4485849 .. 4486722 (+)
Sequence length	874
RNA-Seq Expression	CSPI06G04920.1
Synteny	CSPI06G04920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGGGACTTCGAATGGATCTATCATGAAGCTAAAAGGAAAAATAGAGGATGTGGACTATAAACGAGGCAAACATGATCACAGTAGACCAAAGAAAATACAAAAAATTGAAAATGCAGATTTTTATGGGAGAAAACCCCGTGTCATGGGTCTACAGGGCAGAACACTTCTTTGAAATCAATAACCTACCAGAAGCAGAAAAGGTCAAGGTTGTTGTAGTAAGTTTTGGACAGGATGAAGTAGACTGGTATAGATGGTCTCATAATAGGAAGAAAGTTGAATCATGGGAGGACCTTAAAGGAAGGATGTTCAAATTTTTTAAGGACACAGGCAAGAAAAACTTAGTCGCAAGGTTGATCAGAATTCAACAAGATGGCTCATACAACGACTACGTGAAGAAGTTCGTTAATTATTCAGCTCCCCTACCTCACATGGCAGAGAGTGTGCCAAGGGATGAGTTTGTAACAGGATTAAAACCAGACCTTCAGGCCGAAGTTATTTGCAGACATCCGCAAACTTTGGAAGATTGTATGAAAGAAGCCCAGTTGGTCAATGATAGGAATTTGGCATTGAAATTGGCAAAGATAGAGTGGGGATTGATGGAACAGAAAAAAAGAGAAGGGAACTCCGGTAAGAATCAAGGAGGACAGAAGGGAGTTCAGAGGAAAACAAAATTTCCAATGAAACAGGTAACTATTCCAATTAGAGGCAATTACCAAAAGAGTGAACCCCCTTTGAAACGACTATAAGATGCAGAGTTCCAGGCTCGACTTGACAAGGGTATGTGCTTTAAATGTAATGAAAGATATTCGCCAAGAAATAGGTGCAAAATGAAGGAAAAAAAGGAGTTGATGTTGTTCATCCTAAATGAAGA

mRNA sequence

GTCTGGGACTTCGAATGGATCTATCATGAAGCTAAAAGGAAAAATAGAGGATGTGGACTATAAACGAGGCAAACATGATCACAGTAGACCAAAGAAAATACAAAAAATTGAAAATGCAGATTTTTATGGGAGAAAACCCCGTGTCATGGGTCTACAGGGCAGAACACTTCTTTGAAATCAATAACCTACCAGAAGCAGAAAAGGTCAAGGTTGTTGTAGTAAGTTTTGGACAGGATGAAGTAGACTGGTATAGATGGTCTCATAATAGGAAGAAAGTTGAATCATGGGAGGACCTTAAAGGAAGGATGTTCAAATTTTTTAAGGACACAGGCAAGAAAAACTTAGTCGCAAGGTTGATCAGAATTCAACAAGATGGCTCATACAACGACTACGTGAAGAAGTTCGTTAATTATTCAGCTCCCCTACCTCACATGGCAGAGAGTGTGCCAAGGGATGAGTTTGTAACAGGATTAAAACCAGACCTTCAGGCCGAAGTTATTTGCAGACATCCGCAAACTTTGGAAGATTGTATGAAAGAAGCCCAGTTGGTCAATGATAGGAATTTGGCATTGAAATTGGCAAAGATAGAGTGGGGATTGATGGAACAGAAAAAAAGAGAAGGGAACTCCGGTAAGAATCAAGGAGGACAGAAGGGAGTTCAGAGGAAAACAAAATTTCCAATGAAACAGGTAACTATTCCAATTAGAGGCAATTACCAAAAGAGTGAACCCCCTTTGAAACGACTATAAGATGCAGAGTTCCAGGCTCGACTTGACAAGGGTATGTGCTTTAAATGTAATGAAAGATATTCGCCAAGAAATAGGTGCAAAATGAAGGAAAAAAAGGAGTTGATGTTGTTCATCCTAAATGAAGA

Coding sequence (CDS)

ATGTGGACTATAAACGAGGCAAACATGATCACAGTAGACCAAAGAAAATACAAAAAATTGAAAATGCAGATTTTTATGGGAGAAAACCCCGTGTCATGGGTCTACAGGGCAGAACACTTCTTTGAAATCAATAACCTACCAGAAGCAGAAAAGGTCAAGGTTGTTGTAGTAAGTTTTGGACAGGATGAAGTAGACTGGTATAGATGGTCTCATAATAGGAAGAAAGTTGAATCATGGGAGGACCTTAAAGGAAGGATGTTCAAATTTTTTAAGGACACAGGCAAGAAAAACTTAGTCGCAAGGTTGATCAGAATTCAACAAGATGGCTCATACAACGACTACGTGAAGAAGTTCGTTAATTATTCAGCTCCCCTACCTCACATGGCAGAGAGTGTGCCAAGGGATGAGTTTGTAACAGGATTAAAACCAGACCTTCAGGCCGAAGTTATTTGCAGACATCCGCAAACTTTGGAAGATTGTATGAAAGAAGCCCAGTTGGTCAATGATAGGAATTTGGCATTGAAATTGGCAAAGATAGAGTGGGGATTGATGGAACAGAAAAAAAGAGAAGGGAACTCCGGTAAGAATCAAGGAGGACAGAAGGGAGTTCAGAGGAAAACAAAATTTCCAATGAAACAGGTAACTATTCCAATTAGAGGCAATTACCAAAAGAGTGAACCCCCTTTGAAACGACTATAA

Protein sequence

MWTINEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQGGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL*

Homology

[Close]

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL
Match: A0A5D3CT96 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001230 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL
Match: A0A5D3DU86 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00470 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL
Match: A0A5D3BYA1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00360 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 2.8e-96
Identity = 174/229 (75.98%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 5   NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEV 64
           NE N+   D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPE EKVKV VVSFGQDEV
Sbjct: 71  NEGNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEV 130

Query: 65  DWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAP 124
           DWYRWSHNR+KVESWEDLK RMF FFKDTG+K+LVARLIRI+QDGSYNDYVKKFVNYSAP
Sbjct: 131 DWYRWSHNRRKVESWEDLKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAP 190

Query: 125 LPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLM 184
           LPHM ESV RD F+TGL+P+LQAEV+ R+P TLE+CM+EAQLVNDRNLAL+ +K E G  
Sbjct: 191 LPHMTESVLRDAFLTGLEPNLQAEVVSRNPLTLEECMREAQLVNDRNLALQWSKAEGGGR 250

Query: 185 EQKKREGNSGKN-QGGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
             KK EG++ K  +GG+KG+ RKT+FP+KQVTIPI+GNYQKSEPP+KRL
Sbjct: 251 NYKKGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVKRL 299

[Close]

BLAST of CSPI06G04920.1 vs. NCBI nr
Match: XP_031744430.1 (uncharacterized protein LOC116405043 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 9.3e-92
Identity = 166/229 (72.49%), Postives = 198/229 (86.46%), Query Frame = 0


Query: 5   NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEV 64
           NE N   VD+ KY KL+M +F+GENP SWVYRAEHFFE+NNLPE EK++V VVSFGQ+EV
Sbjct: 71  NEVNGSNVDRSKYAKLEMPMFLGENPESWVYRAEHFFEMNNLPENEKIRVAVVSFGQEEV 130

Query: 65  DWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAP 124
           DWYRW+HNRKKVESWEDLKGRMF FFKD+G+ +LVARLIRIQQDGSY++YVKKFV YSAP
Sbjct: 131 DWYRWTHNRKKVESWEDLKGRMFDFFKDSGQTSLVARLIRIQQDGSYSEYVKKFVTYSAP 190

Query: 125 LPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLM 184
           LPHM ESV RD F+TGL+P+LQAEV+ R+P+TLEDCM+EAQLVNDRN+A+KL KIE   +
Sbjct: 191 LPHMEESVLRDAFLTGLEPNLQAEVVSRYPRTLEDCMREAQLVNDRNVAMKLTKIEGRTV 250

Query: 185 EQKKREGNSGKNQGG-QKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
           E KK+E  +GK Q G  KG  R+T FP+KQVTIPI+G+YQK+EPP+KRL
Sbjct: 251 EPKKKEEYAGKIQDGTDKGYMRRTDFPIKQVTIPIKGSYQKNEPPIKRL 299

[Close]

BLAST of CSPI06G04920.1 vs. NCBI nr
Match: TYK28944.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-91
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. NCBI nr
Match: TYJ96663.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-91
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

[Close]

BLAST of CSPI06G04920.1 vs. NCBI nr
Match: TYK15071.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-91
Identity = 167/222 (75.23%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 12  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSH 71
           +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSH
Sbjct: 77  IDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSH 136

Query: 72  NRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSYNDYVKKFVNYSAPLPHMAES 131
           NR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY+DYVKKFVNYSAPLPHMAES
Sbjct: 137 NRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAES 196

Query: 132 VPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREG 191
           V RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E 
Sbjct: 197 VLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKLAQAEMGIIEPKRSES 256

Query: 192 NSGKNQ-GGQKGVQRKTKFPMKQVTIPIRGNYQKSEPPLKRL 233
              K Q   +KG+ RK +F MKQ+TIP++G+YQK EPP+KRL
Sbjct: 257 VGNKVQWNNEKGMLRKNEFQMKQITIPLKGSYQKGEPPVKRL 298

The following BLAST results are available for this feature:

BLAST of CSPI06G04920.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G04920.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBH7	7.7e-92	75.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	7.7e-92	75.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CT96	7.7e-92	75.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DU86	7.7e-92	75.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BYA1	7.7e-92	75.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI06G04920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745528.1	2.8e-96	75.98	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
XP_031744430.1	9.3e-92	72.49	uncharacterized protein LOC116405043 [Cucumis sativus]	[more]
TYK28944.1	1.6e-91	75.23	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96663.1	1.6e-91	75.23	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15071.1	1.6e-91	75.23	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G04920.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 54..142 e-value: 1.5E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..232
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 20..175
None	No IPR available	PANTHER	PTHR34482:SF28	OS02G0566300 PROTEIN	coord: 20..175

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G04920	CSPI06G04920	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G04920.1.utr5p1	CSPI06G04920.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G04920.1.cds1	CSPI06G04920.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G04920.1.utr3p1	CSPI06G04920.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G04920.1	CSPI06G04920.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding