CSPI05G23570.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G23570.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor PRE6-like
Location	Chr5: 23602619 .. 23604473 (-)
Sequence length	903
RNA-Seq Expression	CSPI05G23570.1
Synteny	CSPI05G23570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACATATATATTGCTTTCTATATATATTGTCTTTCTCCAACTAAAACATTATAGAGACCTTCTCCTTTTCATTTTGGGTTTCTCTTCAACTCTCTCCTTTCTAGCTTTCTCAATTCCCCAATATCTTTACTTTACCCGAGTTTATTATTGATCTTTTTTCAAAAATAATAAAGGAGTGAGGGGAGGGGAGGGAATTATTATATCTGACAATTTTTTTAAAATTTGAATTTGTTGAATTTTGAAAGAAACAAAAACAATGTCGGGGAGAAGCTCGCGTTCTCGGCGCTCGGGTGTTGGTTCCAGGAATATTTCTGACGAACAAATTGCTGATTTGATATCCAAATTACAACAGCTCATTCCTGAGATTCGCAACGGCCGTTCCTCCTCTAGGGTATTGTATTTCTTCTTTCTTAATTCTTTCTTTCTTTTTTTAATTACTATTCCCACTTATTACTTACTTCAATGACTTTAAATTAATTGATTTATGTACTTAGATAAGCTGGTGGTTAATTGTGTGGATATTAGTTTGCATAATCAAGTGTTGTGTGCTAATTTAAATTAGCAGCTCCCAACAGGAAGGAGAGTGGGTTAACTATTGGACTTTGAATCTAATTAAGTCATTCAGCATTTCTCAATTATAATCTCCATCCCCTTCAATTAAAACTTGTTCAACAGTCTGTGCAAGTCAATGCAAAACAATGTGTTCTATATTGAATTTAACCTCATTGTTGAAAACAATGTTCTAACAAAAACACGTGGATTGTAAGTCTGATTTCAATGACAAAGTATAGTTCTTTTTTTCATTTTTTTTTGTTTTCAAATTTCTATCTCCATGATTTACACAAGTAGAAATTAAAGAAAAGAAACTAGAGACAAAAGAAAACGATAAAGAGTCAATACAAAAATTTACATAATTTAGTATCATTTTGCAAATACTAAAGCACAAGTGAGTTTATATAGTGTACCAAGTTCTTTTTAGAGTGTATATAAAACAGATTTGAGATATTTCAACAATAAAATTAATTGAAAACAATGTGTTGGAACGCTTTAAACCTATTATCTAACATTTTGAATGAGCAAACATGCACAAAGGCGGCCTCACTCTAGTGAGGGTCTCGAAACCTAATTTGTTTATAAGTATTATATGTTATTGACGATTTCAAGCATCAAATTTAGAGAAGTGTCTTTAACAAACACTCTAATTTCTATTAGCACCTTTTTGTTTGTATTATTTTACTAACGCATGAAGTTTTTGTTTACCATTAACATTTTCTTTGATCGTCAATTTCGTTTATGTCACAACAAAATCTTATCAATTCAAAATGTGTATGGTGGTTGTTTAGGTATCCGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTATCAGAACTATTGGCATCAACAGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAGTAATATTAATCATCCAAATTCCCTGAGTTTAATTACCTTCTTCTATACACATAATTTGCTCTTCACCCAACCACAACCCCCTCCTACCCATCCATGCAATTAAATTAATATAAACATATATAAATTAAAGTCGTATAATAAAAGGGATATTGTGATCTCTAGGCTTTACTATAATTAATTACTCTCGTAGATAATATATATATATAGCTAAATTTTGTTGCTTAATGGTGATCAGAGAAGAAATTATGTGTAACGCATGAAGAGCTGGGCGAATATATTATATTTGTTCCCACAATATAATATCTTATAAGGTTGAGCTTTATTTTTATTTTATTCATATATTTATATGATTAAAAT

mRNA sequence

CCCACATATATATTGCTTTCTATATATATTGTCTTTCTCCAACTAAAACATTATAGAGACCTTCTCCTTTTCATTTTGGGTTTCTCTTCAACTCTCTCCTTTCTAGCTTTCTCAATTCCCCAATATCTTTACTTTACCCGAGTTTATTATTGATCTTTTTTCAAAAATAATAAAGGAGTGAGGGGAGGGGAGGGAATTATTATATCTGACAATTTTTTTAAAATTTGAATTTGTTGAATTTTGAAAGAAACAAAAACAATGTCGGGGAGAAGCTCGCGTTCTCGGCGCTCGGGTGTTGGTTCCAGGAATATTTCTGACGAACAAATTGCTGATTTGATATCCAAATTACAACAGCTCATTCCTGAGATTCGCAACGGCCGTTCCTCCTCTAGGGTATCCGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTATCAGAACTATTGGCATCAACAGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAGTAATATTAATCATCCAAATTCCCTGAGTTTAATTACCTTCTTCTATACACATAATTTGCTCTTCACCCAACCACAACCCCCTCCTACCCATCCATGCAATTAAATTAATATAAACATATATAAATTAAAGTCGTATAATAAAAGGGATATTGTGATCTCTAGGCTTTACTATAATTAATTACTCTCGTAGATAATATATATATATAGCTAAATTTTGTTGCTTAATGGTGATCAGAGAAGAAATTATGTGTAACGCATGAAGAGCTGGGCGAATATATTATATTTGTTCCCACAATATAATATCTTATAAGGTTGAGCTTTATTTTTATTTTATTCATATATTTATATGATTAAAAT

Coding sequence (CDS)

ATGTCGGGGAGAAGCTCGCGTTCTCGGCGCTCGGGTGTTGGTTCCAGGAATATTTCTGACGAACAAATTGCTGATTTGATATCCAAATTACAACAGCTCATTCCTGAGATTCGCAACGGCCGTTCCTCCTCTAGGGTATCCGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTATCAGAACTATTGGCATCAACAGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAG

Protein sequence

MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM*

Homology

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-27
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 2  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-25
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-25
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-24
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-24
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.1e-35
Identity = 88/95 (92.63%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.0e-35
Identity = 88/95 (92.63%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGRSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 88/95 (92.63%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CSPI05G23570.1 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 2  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CSPI05G23570.1 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of CSPI05G23570.1 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CSPI05G23570.1 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R  RSR++   SR ISD+Q+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR
Sbjct: 1  MSNR--RSRQTSNASR-ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
           L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Sbjct: 61 KLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CSPI05G23570.1 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR++G     I+DEQI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR
Sbjct: 1  MSSRKSRSRQTGASM--ITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          +L +EVDDLS+RLS+LL STD  SAQAA+IRSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of CSPI05G23570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	3.4e-27	77.42	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	3.2e-25	71.58	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	3.2e-25	71.58	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9LXG5	2.1e-24	67.78	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9CA64	2.1e-24	68.09	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]

BLAST of CSPI05G23570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ7	6.3e-40	100.00	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	1.4e-39	98.95	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]
A0A6J1DAM4	7.2e-36	93.68	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	6.1e-35	92.63	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	8.0e-35	92.63	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of CSPI05G23570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135185.1	1.3e-39	100.00	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_008446331.1	2.9e-39	98.95	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_038893351.1	2.5e-38	97.89	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022151230.1	1.5e-35	93.68	transcription factor PRE6-like [Momordica charantia]	[more]
XP_022968308.1	1.3e-34	92.63	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of CSPI05G23570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	2.4e-28	77.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	1.5e-25	68.09	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G15160.1	1.5e-25	67.78	BANQUO 2	[more]
AT3G28857.1	6.2e-24	65.26	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	8.2e-24	64.21	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 17..68 e-value: 0.0042 score: 26.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 22..63 e-value: 6.2E-7 score: 29.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 7..62 score: 10.245197
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..89 e-value: 3.3E-9 score: 38.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..82
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G23570	CSPI05G23570	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G23570.1.utr3p1	CSPI05G23570.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G23570.1.cds2	CSPI05G23570.1.cds2	CDS
CSPI05G23570.1.cds1	CSPI05G23570.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G23570.1.utr5p1	CSPI05G23570.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G23570.1	CSPI05G23570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity