CSPI05G21230.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI05G21230.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription termination factor MTERF5
LocationChr5: 22054525 .. 22055419 (+)
Sequence length895
RNA-Seq ExpressionCSPI05G21230.1
SyntenyCSPI05G21230.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAGGATTGGAAGGTAGTTAGTTAATTAGTGTCATAGTTCTTCTATTAGTTGCTCTAAACAAAGATTGACTTTTGTGAATGGAGACCCAGTAGAGGAGGTCTACATCAGCCCTGCGTCTCAAAGAGAAAATACACCGTTGATTTGCTAAATGACACAGGTATGTTGGGTACGGTCTGCTGACATTAATAATGTTCTTATAGTTTAAATTTGAGCATCATGTGATCTTCAAATGGGAGAGCATTTTTGTTGTTATTAAGCCTACTGTCTTAAATAACACTGCTTCTTGAGCTTTTCAAATGGGGTGGGAGGGTTGTGTTGTTTTTGCATCCAAATTAAGGCAATTAGTTAGGTAAATCTATTTGGTGTATAATTCTTCATAGACATGTTAATCTTGAAATTGGAGGCC

mRNA sequence

GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAGGATTGGAAGGTAGTTAGTTAATTAGTGTCATAGTTCTTCTATTAGTTGCTCTAAACAAAGATTGACTTTTGTGAATGGAGACCCAGTAGAGGAGGTCTACATCAGCCCTGCGTCTCAAAGAGAAAATACACCGTTGATTTGCTAAATGACACAGGTATGTTGGGTACGGTCTGCTGACATTAATAATGTTCTTATAGTTTAAATTTGAGCATCATGTGATCTTCAAATGGGAGAGCATTTTTGTTGTTATTAAGCCTACTGTCTTAAATAACACTGCTTCTTGAGCTTTTCAAATGGGGTGGGAGGGTTGTGTTGTTTTTGCATCCAAATTAAGGCAATTAGTTAGGTAAATCTATTTGGTGTATAATTCTTCATAGACATGTTAATCTTGAAATTGGAGGCC

Coding sequence (CDS)

GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAG

Protein sequence

AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL*
Homology
[Close]
BLAST of CSPI05G21230.1 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04
Identity = 34/110 (30.91%), Postives = 53/110 (48.18%), Query Frame = 0 

Query: 6   KELGVEPKD--FKFVHAVTTVLSMS-DSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTC 65
           KELG  P+D   K V     +L  S D  +  +IN ++S+G   ++I          L+ 
Sbjct: 337 KELGA-PRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSL 396

Query: 66  S-EDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLK 112
           S ED L+    +  N    +   L  YP+    S+D+R+RPR++ L  LK
Sbjct: 397 SLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELK 445

[Close]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match: A0A5D3CWN7 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002840 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 133/164 (81.10%), Postives = 145/164 (88.41%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD  FV+AV+ V SM+ S+WKKKINVMKSLGWSE EIFTAFK++P  L
Sbjct: 211 AVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRYPLCL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDPGTLISYPV F  SVDKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 271 TCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLLKNKK 330

Query: 121 SAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV 163
            A    F +GEREFV+N +VKHLDEIPNLMDIYRGN ASETKSV
Sbjct: 331 IALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 374

[Close]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 130/163 (79.75%), Postives = 140/163 (85.89%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL
Sbjct: 211 AVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 271 GCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Sbjct: 331 IASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match: A0A5A7SW09 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001070 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 130/163 (79.75%), Postives = 140/163 (85.89%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL
Sbjct: 211 AVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 271 GCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Sbjct: 331 IASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match: A0A1S3BDE1 (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 130/163 (79.75%), Postives = 140/163 (85.89%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL
Sbjct: 211 AVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 271 GCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Sbjct: 331 IASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match: A0A1S3BH03 (uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 133/164 (81.10%), Postives = 145/164 (88.41%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD  FV+AV+ V SM+ S+WKKKINVMKSLGWSE EIFTAFK++P  L
Sbjct: 65  AVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRYPLCL 124

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDPGTLISYPV F  SVDKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 125 TCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLLKNKK 184

Query: 121 SAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV 163
            A    F +GEREFV+N +VKHLDEIPNLMDIYRGN ASETKSV
Sbjct: 185 IALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 228

[Close]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match: XP_031741759.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.0e-85
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVK VKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL
Sbjct: 173 AVKRVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 232

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSEDKLR+VADFCFNTAKLDPGTLISYPVLFKYSV+KRLRPRYKVLEVLKVKNLLKNEK
Sbjct: 233 TCSEDKLRNVADFCFNTAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLLKNEK 292

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
           SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Sbjct: 293 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 335

[Close]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match: KAE8648655.1 (hypothetical protein Csa_008541 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.0e-85
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVK VKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL
Sbjct: 211 AVKRVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSEDKLR+VADFCFNTAKLDPGTLISYPVLFKYSV+KRLRPRYKVLEVLKVKNLLKNEK
Sbjct: 271 TCSEDKLRNVADFCFNTAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLLKNEK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
           SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Sbjct: 331 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 373

[Close]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match: KAE8648669.1 (hypothetical protein Csa_007829 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKDFKFVHAVTTVLSMSDS WKKKINVMKSLGWSE EI TAFK++PPYL
Sbjct: 211 AVKTVKELGVEPKDFKFVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRYPPYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK
Sbjct: 271 TCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
           S QLFFRGER+FVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Sbjct: 331 SVQLFFRGERDFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 373

[Close]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match: XP_031741760.1 (transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKDFKFVHAVTTVLSMSDS WKKKINVMKSLGWSE EI TAFK++PPYL
Sbjct: 163 AVKTVKELGVEPKDFKFVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRYPPYL 222

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK
Sbjct: 223 TCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 282

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
           S QLFFRGER+FVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Sbjct: 283 SVQLFFRGERDFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 325

[Close]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match: XP_031741908.1 (transcription termination factor MTERF5, chloroplastic-like isoform X1 [Cucumis sativus] >KAE8648667.1 hypothetical protein Csa_007838 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD KFV AV+ V+S SDS WKKKINVMKSLGWSE EI TAFK++PP+ 
Sbjct: 329 AVKTVKELGVEPKDRKFVLAVSAVVSRSDSAWKKKINVMKSLGWSEKEILTAFKRYPPFF 388

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK
Sbjct: 389 NCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 448

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
           SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Sbjct: 449 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 491

[Close]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18
Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 0 

Query: 3   KTVKELGVEPKDFKFVHAVTTVLSMSD-SNWKKKINVMKSLGWSENEIFTAFKKFPPYLT 62
           K  +E+G  P+   FV A+  +    + S W K   V +  GWSE++I  AFKK P  + 
Sbjct: 249 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 308

Query: 63  CSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS 122
            SE K+    ++  N   + P ++   PV+  +S++KR+ PR  V +VL    L+K + S
Sbjct: 309 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 368

Query: 123 -AQLFFRGEREFVENYIVKHLDEIPNLMDIYRG 154
              L    E+ F+E  ++K+ +E+P LM++Y G
Sbjct: 369 LTSLLVPVEKVFLEKLVIKYEEELPELMNLYLG 401

[Close]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-17
Identity = 42/148 (28.38%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 9   GVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLR 68
           G +PK   FVHA+      S+S  ++K  + +  GWS+ +   A  +FP  +T S++K+ 
Sbjct: 242 GFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIM 301

Query: 69  DVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFF 128
              ++  N   L    +++ PV+   S++KR++PR +V+ +L  K L+K E      +  
Sbjct: 302 YTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILK 361

Query: 129 RGEREFVENYIVKHLDEIPNLMDIYRGN 155
               EF++ +++K+ DE+P L+  +  N
Sbjct: 362 LKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 0 

Query: 2   VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLT 61
           V    +LG        VHAV ++ S+S+  + +K+ +  + G+SE+EI    ++ P  + 
Sbjct: 220 VSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIR 279

Query: 62  CSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS 121
           CSEDKL    +F      L+   L   P +  Y+++KR+ PR KVL++L+ K LL  E+ 
Sbjct: 280 CSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEK 339

Query: 122 AQLFFRG-----EREFVENYIVKHLDEI 145
            +    G     E  F+E Y+V+  DEI
Sbjct: 340 KKKNMVGIVEMTEEAFLEKYVVRFGDEI 367

[Close]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match: AT1G62010.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-14
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 0 

Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           ++K V E+G +P    FVHA+  +  MSD   ++KI V +S+G+S ++++  FKK+P  L
Sbjct: 210 SLKKVVEMGFDPTTSTFVHALHMLYQMSDKTIEEKIRVYRSVGFSVDDVWAMFKKWPRSL 269

Query: 61  TCSEDKL-------------RDV----------------------ADFCFNTAKLDPGTL 120
           T SE K+             RDV                       +F           +
Sbjct: 270 THSEKKVANSIETFLGLGFSRDVFMMMFKRFPPCIGYSTEAVKKKTEFLVKEMNWPVKAV 329

Query: 121 ISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE 160
            S P +  YS++KR  PR  V++VL  K LL++E    + +       F+  Y+ KH D+
Sbjct: 330 ASIPQVLGYSLEKRTVPRCNVIKVLMSKGLLESELPPMSSVLTSTSESFLNLYVSKHDDK 389

[Close]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-14
Identity = 49/192 (25.52%), Postives = 90/192 (46.88%), Query Frame = 0 

Query: 2   VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLT 61
           +K V E+G +P   KFV A+  +  M++   ++K+++ KSLG+   +++++FKK+P  L 
Sbjct: 227 LKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLR 286

Query: 62  CSEDKLRD-----------------------------------VADFCFNTAKLDPGTLI 121
            SE K+ D                                     +F           ++
Sbjct: 287 VSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVV 346

Query: 122 SYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE- 155
           S P +F YS++KR+ PR  V++ L  K L++NE    + +    ++ F+  Y+  H+D+ 
Sbjct: 347 SNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDKQ 406

The following BLAST results are available for this feature:
BLAST of CSPI05G21230.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FM809.2e-0430.91Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O... [more]
BLAST of CSPI05G21230.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWN71.8e-6681.10Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CXX81.8e-6679.75Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SW091.8e-6679.75Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3BDE11.8e-6679.75transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3... [more]
A0A1S3BH031.8e-6681.10uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=... [more]
BLAST of CSPI05G21230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031741759.16.0e-8598.16transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus][more]
KAE8648655.16.0e-8598.16hypothetical protein Csa_008541 [Cucumis sativus][more]
KAE8648669.11.4e-8193.87hypothetical protein Csa_007829 [Cucumis sativus][more]
XP_031741760.11.4e-8193.87transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus][more]
XP_031741908.11.7e-7689.57transcription termination factor MTERF5, chloroplastic-like isoform X1 [Cucumis ... [more]
BLAST of CSPI05G21230.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G07900.13.0e-1832.68Mitochondrial transcription termination factor family protein [more]
AT1G21150.14.3e-1728.38Mitochondrial transcription termination factor family protein [more]
AT5G64950.11.1e-1532.43Mitochondrial transcription termination factor family protein [more]
AT1G62010.14.5e-1429.29Mitochondrial transcription termination factor family protein [more]
AT1G61970.17.7e-1425.52Mitochondrial transcription termination factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 15..45
e-value: 0.83
score: 18.7
coord: 50..81
e-value: 380.0
score: 7.1
coord: 82..113
e-value: 0.11
score: 21.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 3..113
e-value: 2.1E-18
score: 66.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..155
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 1..146
e-value: 6.8E-28
score: 99.5
NoneNo IPR availablePANTHERPTHR13068:SF31TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKEcoord: 1..155

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G21230CSPI05G21230gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G21230.1.cds1CSPI05G21230.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G21230.1.utr3p1CSPI05G21230.1.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G21230.1CSPI05G21230.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006353 DNA-templated transcription, termination
molecular_function GO:0003690 double-stranded DNA binding