CSPI05G13290.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G13290.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	psbQ-like protein 3, chloroplastic
Location	Chr5: 12880531 .. 12881362 (+)
Sequence length	714
RNA-Seq Expression	CSPI05G13290.1
Synteny	CSPI05G13290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATTTTTGGTAATTGTCAATCTCTCTTTAAAATCTCTCCTTTGCTTACGTGGCACATTTCTATCATCTCACATCCATACATACTCACAGAGTTTGCATAAAGCTTCACTCTCAGTACTCCAATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTGTGTGATTATAATGAAGGCTTCTCATCTTGCATGATTTAAAGTGATGAAATGTTTGAAGAATTTTGTGGTGTGTTCTTGGATTTGATATGGATAATTCTCTTCTGTTTCTAGATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAAAAAGATTAGTGAAGGTTTTTTGTTCTGAACAATTCA

mRNA sequence

GCTATTTTTGGTAATTGTCAATCTCTCTTTAAAATCTCTCCTTTGCTTACGTGGCACATTTCTATCATCTCACATCCATACATACTCACAGAGTTTGCATAAAGCTTCACTCTCAGTACTCCAATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAAAAAGATTAGTGAAGGTTTTTTGTTCTGAACAATTCA

Coding sequence (CDS)

ATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAA

Protein sequence

MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI*

Homology

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy Swiss-Prot
Match: Q2V4B2 (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 77  PEQSLDEAESGIRRHAEALLQVRS-LIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R++AE + +++  +IE + WKE  K LR +++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           +RP  R LYS LFN++T+MDYAARD D   V E Y  +   +  I  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA +  +  A+ ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           L + LF+ +  +DYAA+ K      + Y +   A++ +L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 28/102 (27.45%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA + ++  A+ ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+  +L+++
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 28/102 (27.45%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA + ++  A+ ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+  +L+++
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL
Match: A0A0A0KT23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL
Match: A0A5A7VLN5 (PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00050 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 172/184 (93.48%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFS SPLTISF SFNTTPNCS NA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANAL+LKLIAPEQSLDEAE GIR HAEALLQVRSL+ESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD GGV E YKKMEMAIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL
Match: A0A1S3CIJ1 (psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 172/184 (93.48%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFS SPLTISF SFNTTPNCS NA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANAL+LKLIAPEQSLDEAE GIR HAEALLQVRSL+ESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD GGV E YKKMEMAIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL
Match: A0A6J1JRX6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487796 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.1e-64
Identity = 137/185 (74.05%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMA-SSV 60
           MA+L PIS+SNL+NRIHFS SP  ISF  F+ T    +N  +ISRRLGLGF+ALMA SSV
Sbjct: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60

Query: 61  TAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSA 120
            + P ++ NALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LRS+S 
Sbjct: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120

Query: 121 LLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISH 180
           LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   VW+ Y  + MAIS 
Sbjct: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180

Query: 181 ILSRI 185
           ILSRI
Sbjct: 181 ILSRI 185

[Close]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL
Match: A0A6J1HES6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462819 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 8.9e-59
Identity = 134/186 (72.04%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHF-SYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMA-SS 60
           MA+L PIS+SNL+NRIHF S SP   S   F+ T    +N  +ISRRLGLG IALMA SS
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  VTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTS 120
           V + P  +ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LR++S
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 ALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAIS 180
            LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   V + Y  + MAIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAIS 180

Query: 181 HILSRI 185
            ILSRI
Sbjct: 181 DILSRI 186

[Close]

BLAST of CSPI05G13290.1 vs. NCBI nr
Match: XP_004148913.1 (psbQ-like protein 3, chloroplastic [Cucumis sativus] >KGN50891.1 hypothetical protein Csa_023092 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. NCBI nr
Match: XP_008463126.1 (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo] >KAA0066219.1 psbQ-like protein 3 [Cucumis melo var. makuwa] >TYK08644.1 psbQ-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 4.4e-84
Identity = 172/184 (93.48%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFS SPLTISF SFNTTPNCS NA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANAL+LKLIAPEQSLDEAE GIR HAEALLQVRSL+ESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD GGV E YKKMEMAIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. NCBI nr
Match: XP_038877067.1 (psbQ-like protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-76
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MA+L+PIS+SNLTNRI FS    TISF SFNTTPNCS NATNISRRLGLGFIALMASSVT
Sbjct: 1   MAELLPISVSNLTNRIPFSSFRPTISFQSFNTTPNCSINATNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           A P E+ANALDLKLIAPEQSLDEAESGIR HAEALLQVRSLIESEAWKEAQKRLRS+S L
Sbjct: 61  ATPVELANALDLKLIAPEQSLDEAESGIRSHAEALLQVRSLIESEAWKEAQKRLRSSSPL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHI 180
           LKQDLYTIIEYKPPAERPALRKLYS+LFNNVTRMDYAARDKDV GVW+ Y  + +AIS I
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSVLFNNVTRMDYAARDKDVEGVWKCYNNIAIAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of CSPI05G13290.1 vs. NCBI nr
Match: XP_022991100.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-63
Identity = 137/185 (74.05%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMA-SSV 60
           MA+L PIS+SNL+NRIHFS SP  ISF  F+ T    +N  +ISRRLGLGF+ALMA SSV
Sbjct: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60

Query: 61  TAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSA 120
            + P ++ NALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LRS+S 
Sbjct: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120

Query: 121 LLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISH 180
           LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   VW+ Y  + MAIS 
Sbjct: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180

Query: 181 ILSRI 185
           ILSRI
Sbjct: 181 ILSRI 185

[Close]

BLAST of CSPI05G13290.1 vs. NCBI nr
Match: XP_023551782.1 (psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-60
Identity = 137/190 (72.11%), Postives = 155/190 (81.58%), Query Frame = 0


Query: 1   MAKLIPISLSNLTNRIHF-SYSPLTISFPSFNTT----PNCSNNATNISRRLGLGFIALM 60
           MA+L PIS+SNL+NRIHF S SP  IS   F+ T     NC + + +ISRRLGLG IALM
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60

Query: 61  A-SSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRL 120
           A SSV + P ++ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+L
Sbjct: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120

Query: 121 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKME 180
           RS+S LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAARDKD   VW+ Y  + 
Sbjct: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180

Query: 181 MAISHILSRI 185
           MAIS ILSRI
Sbjct: 181 MAISDILSRI 190

[Close]

BLAST of CSPI05G13290.1 vs. TAIR 10
Match: AT2G01918.1 (PsbQ-like 3 )

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-21
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 77  PEQSLDEAESGIRRHAEALLQVRS-LIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R++AE + +++  +IE + WKE  K LR +++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           +RP  R LYS LFN++T+MDYAARD D   V E Y  +   +  I  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of CSPI05G13290.1 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA +  +  A+ ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           L + LF+ +  +DYAA+ K      + Y +   A++ +L+++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of CSPI05G13290.1 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA +  +  A+ ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISHILSRI 185
           L + LF+ +  +DYAA+ K      + Y +   A++ +L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

The following BLAST results are available for this feature:

BLAST of CSPI05G13290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V4B2	1.3e-19	44.04	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 ...	[more]
Q9XFT3	5.7e-10	32.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	1.2e-07	27.45	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q41806	1.5e-07	27.45	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]

BLAST of CSPI05G13290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23	9.4e-93	99.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1	[more]
A0A5A7VLN5	2.1e-84	93.48	PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G...	[more]
A0A1S3CIJ1	2.1e-84	93.48	psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=3 ...	[more]
A0A6J1JRX6	7.1e-64	74.05	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HES6	8.9e-59	72.04	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CSPI05G13290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148913.1	2.0e-92	99.46	psbQ-like protein 3, chloroplastic [Cucumis sativus] >KGN50891.1 hypothetical pr...	[more]
XP_008463126.1	4.4e-84	93.48	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo] >KAA0066219.1 psbQ-...	[more]
XP_038877067.1	2.0e-76	85.87	psbQ-like protein 3, chloroplastic [Benincasa hispida]	[more]
XP_022991100.1	1.5e-63	74.05	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_023551782.1	1.5e-60	72.11	psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI05G13290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01918.1	9.5e-21	44.04	PsbQ-like 3	[more]
AT4G21280.1	4.0e-11	32.35	photosystem II subunit QA	[more]
AT4G21280.2	4.0e-11	32.35	photosystem II subunit QA	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 56..184 e-value: 1.3E-30 score: 108.4
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 77..183
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 77..183 e-value: 2.1E-17 score: 63.5
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 24..184
None	No IPR available	PANTHER	PTHR33399:SF6	PSBQ-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 24..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G13290	CSPI05G13290	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G13290.1.utr5p1	CSPI05G13290.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G13290.1.cds1	CSPI05G13290.1.cds1	CDS
CSPI05G13290.1.cds2	CSPI05G13290.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G13290.1.utr3p1	CSPI05G13290.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G13290.1	CSPI05G13290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity