CSPI05G12280.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G12280.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 11428488 .. 11428691 (-)
Sequence length	204
RNA-Seq Expression	CSPI05G12280.1
Synteny	CSPI05G12280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

mRNA sequence

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Coding sequence (CDS)

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG

Protein sequence

MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKSKPRLRMP*

Homology

[Close]

BLAST of CSPI05G12280.1 vs. ExPASy TrEMBL
Match: A0A0A0KMD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 61 KPRLRMP 68
          KPRLRMP
Sbjct: 61 KPRLRMP 67

[Close]

BLAST of CSPI05G12280.1 vs. NCBI nr
Match: KGN50830.1 (hypothetical protein Csa_004697 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60

Query: 61 KPRLRMP 68
          KPRLRMP
Sbjct: 61 KPRLRMP 67

The following BLAST results are available for this feature:

BLAST of CSPI05G12280.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G12280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMD4	7.1e-30	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1	[more]

BLAST of CSPI05G12280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50830.1	1.5e-29	98.51	hypothetical protein Csa_004697 [Cucumis sativus]	[more]

BLAST of CSPI05G12280.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G12280	CSPI05G12280	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G12280.1.cds1	CSPI05G12280.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G12280.1	CSPI05G12280.1-protein	polypeptide