CSPI04G27000.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI04G27000.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	WUSCHEL-related homeobox 8-like
Location	Chr4: 23885319 .. 23886379 (+)
Sequence length	910
RNA-Seq Expression	CSPI04G27000.2
Synteny	CSPI04G27000.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGTATGTCACTCTGTTTTTTCAAGAGCTATACATTTGAACATTTCTTGAATTTTCTTCATCGGAAATTTCCATAATGCAGCAATTATATATGAGTATGCTCAATCAAACATATATCATTTGTTGGTGTCTAATTCAACTTGTCAATGTGCAGGAAATAATATGTCGAATGATAAAATGAACGTACCAGACTACTCTCCATACACTCCTTGTGAAGGATATCACTTGGTCGAGTGACTGCTTGCCTTGAAGCTCATCCTGGAGGAATGTGCGAACTGACACAGTACATATTACACTGCATGTATAAGGAAATTAAATTTTGAAAATGCTTGTAAGGCATTTTATATACGTGGTTATGAACTATATAGCTTATAGTACTGCTTGAAACCAAATTTTGAAGGATTTGATTAAATACGTTACGTTACGTTTTGG

mRNA sequence

TTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGAAATAATATGTCGAATGATAAAATGAACGTACCAGACTACTCTCCATACACTCCTTGTGAAGGATATCACTTGGTCGAGTGACTGCTTGCCTTGAAGCTCATCCTGGAGGAATGTGCGAACTGACACAGTACATATTACACTGCATGTATAAGGAAATTAAATTTTGAAAATGCTTGTAAGGCATTTTATATACGTGGTTATGAACTATATAGCTTATAGTACTGCTTGAAACCAAATTTTGAAGGATTTGATTAAATACGTTACGTTACGTTTTGG

Coding sequence (CDS)

ATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGAAATAATATGTCGAATGATAAAATGAACGTACCAGACTACTCTCCATACACTCCTTGTGAAGGATATCACTTGGTCGAGTGA

Protein sequence

MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNVPDYSPYTPCEGYHLVE*

Homology

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot
Match: Q5QMM3 (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX8 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 97/178 (54.49%), Postives = 121/178 (67.98%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDP+M    GHKITARQRWTPTP+QLQILE IFD+GNGTPSKQKIKDIT +L+
Sbjct: 69  MRLGNLYCDPLMV-PGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELS 128

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISE NVYNWFQNRRARSKRKQA    NNA+SE E + +SP +KK K +    ++++
Sbjct: 129 QHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDR-PLHQNI 188

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMF------QSFGSGHISQMTPIQNHRNN 173
             +  N     ++  +E+  FD +  +   M        S  SG + QM+   N  +N
Sbjct: 189 AMRDHN-----SERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSN 239

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot
Match: O81788 (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana OX=3702 GN=WOX13 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.9e-37
Identity = 88/164 (53.66%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 2   RLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQ 61
           R+G LY DP+M S+ GHK+TARQRWTPTPVQLQILE+IFD+G GTPSKQKIKDIT +L+Q
Sbjct: 77  RMGGLYADPMM-SSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQ 136

Query: 62  HGQISEANVYNWFQNRRARSKRKQ---ANSLPNNADSEPETEVDSPKEKK-TKPEAF--- 121
           HGQI+E NVYNWFQNRRARSKRKQ    +S  NN +SE ETEV++  EK+  +PE+    
Sbjct: 137 HGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGL 196

Query: 122 ------------QTYEHLVPKSGNMYSQRTDLSTEILSFDAQSN 147
                        T     P+  ++  Q  ++S+++   D  SN
Sbjct: 197 PDGNSNNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSN 239

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot
Match: Q9LM84 (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana OX=3702 GN=WOX14 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-26
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 7   YCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQIS 66
           Y DP+ AS++ H+I+ R RWTPT  QLQILE I+DEG+GTP++++I++I  +L++HGQI+
Sbjct: 77  YFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQIT 136

Query: 67  EANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLV 122
           E NVYNWFQNRRARSKRKQ  +   N  ++        +         ++YEH++
Sbjct: 137 ETNVYNWFQNRRARSKRKQPQTTTANGQADDVAVTTEERRSCGDSGGLESYEHIL 191

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot
Match: Q9LM83 (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana OX=3702 GN=WOX10 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.6e-25
Identity = 56/118 (47.46%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 7   YCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQIS 66
           Y DP++AS++ H ++ R RWTPT  QLQILE I+ EG+GTP+ ++IK+IT++L++HGQI 
Sbjct: 61  YFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIM 120

Query: 67  EANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE---AFQTYEHLV 122
           E NVY+WFQNRRARSKRKQ  +    +    +  V + +E+    +    F++YEH++
Sbjct: 121 EKNVYHWFQNRRARSKRKQPPTTTITSSQADDAAVTTTEERGRCGDDSGGFESYEHIL 178

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot
Match: A2WWU7 (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 10  PIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEAN 69
           P+  ++A     A  RWTPT  Q+ +LE ++ +G  TP+ ++I+ IT +L +HG I   N
Sbjct: 29  PLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKN 88

Query: 70  VYNWFQNRRARSKRKQ 86
           V+ WFQN +AR ++KQ
Sbjct: 89  VFYWFQNHKARQRQKQ 104

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL
Match: A0A0A0L5X4 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G663700 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 6.5e-108
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 74  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 133

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL
Sbjct: 134 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 193

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGH SQMTPIQNHRNNMSNDKMNV
Sbjct: 194 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNHRNNMSNDKMNV 253

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYSPYTPCEGYHLVE
Sbjct: 254 PDYSPYTPCEGYHLVE 269

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL
Match: A0A5A7VAN2 (WUSCHEL-related homeobox 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00560 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.1e-105
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 74  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 133

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHL
Sbjct: 134 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHL 193

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VP+SGNMYSQRTDLSTEILSFDAQSNKGE MFQSFGSGHISQMTPIQNHRNNMSNDK NV
Sbjct: 194 VPQSGNMYSQRTDLSTEILSFDAQSNKGESMFQSFGSGHISQMTPIQNHRNNMSNDKTNV 253

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYS YTPCEGYHLVE
Sbjct: 254 PDYSAYTPCEGYHLVE 269

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL
Match: A0A1S3BUJ7 (WUSCHEL-related homeobox 8-like OS=Cucumis melo OX=3656 GN=LOC103493822 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.1e-105
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 58  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 117

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHL
Sbjct: 118 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHL 177

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VP+SGNMYSQRTDLSTEILSFDAQSNKGE MFQSFGSGHISQMTPIQNHRNNMSNDK NV
Sbjct: 178 VPQSGNMYSQRTDLSTEILSFDAQSNKGESMFQSFGSGHISQMTPIQNHRNNMSNDKTNV 237

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYS YTPCEGYHLVE
Sbjct: 238 PDYSAYTPCEGYHLVE 253

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL
Match: A0A6J1C9D0 (WUSCHEL-related homeobox 8-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009420 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99
Identity = 183/197 (92.89%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 79  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 138

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANS PNNADSE ETEVDSPKEKKTKPEAFQTYE  
Sbjct: 139 QHGQISEANVYNWFQNRRARSKRKQANSQPNNADSEAETEVDSPKEKKTKPEAFQTYEDF 198

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPKS NMYSQR+DL  E LSFDAQSNKGEPMFQSFGSGHISQMTP QNHRNN+SNDKMNV
Sbjct: 199 VPKSSNMYSQRSDLGAEFLSFDAQSNKGEPMFQSFGSGHISQMTPTQNHRNNLSNDKMNV 258

Query: 181 P-DYSPYTPCEGYHLVE 197
           P DY+PY PCEGYHLVE
Sbjct: 259 PDDYTPYHPCEGYHLVE 275

[Close]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL
Match: A0A6J1IE07 (WUSCHEL-related homeobox 8-like OS=Cucurbita maxima OX=3661 GN=LOC111476380 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.0e-98
Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMA AAGHKITARQRWTPTPVQLQILE+IFDEGNGTPSKQKIKDITLQL 
Sbjct: 79  MRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLI 138

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           Q+GQISEANVYNWFQNRRARSKRKQANS PNNADSEPETEVDSPKEKKTKPE FQ YEH 
Sbjct: 139 QYGQISEANVYNWFQNRRARSKRKQANSAPNNADSEPETEVDSPKEKKTKPETFQAYEHF 198

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPK  N+YSQR++L  EILSFD Q+NKGEPMFQSFGSGHISQMTP QNHRNNMSN+KMNV
Sbjct: 199 VPKLSNVYSQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNV 258

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYSPY+PCEGYHLVE
Sbjct: 259 PDYSPYSPCEGYHLVE 274

[Close]

BLAST of CSPI04G27000.2 vs. NCBI nr
Match: XP_004145546.1 (WUSCHEL-related homeobox 8 [Cucumis sativus])

HSP 1 Score: 399.8 bits (1026), Expect = 1.3e-107
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 74  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 133

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL
Sbjct: 134 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 193

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGH SQMTPIQNHRNNMSNDKMNV
Sbjct: 194 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNHRNNMSNDKMNV 253

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYSPYTPCEGYHLVE
Sbjct: 254 PDYSPYTPCEGYHLVE 269

[Close]

BLAST of CSPI04G27000.2 vs. NCBI nr
Match: KAA0064648.1 (WUSCHEL-related homeobox 8-like [Cucumis melo var. makuwa] >TYK19944.1 WUSCHEL-related homeobox 8-like [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 74  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 133

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHL
Sbjct: 134 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHL 193

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VP+SGNMYSQRTDLSTEILSFDAQSNKGE MFQSFGSGHISQMTPIQNHRNNMSNDK NV
Sbjct: 194 VPQSGNMYSQRTDLSTEILSFDAQSNKGESMFQSFGSGHISQMTPIQNHRNNMSNDKTNV 253

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYS YTPCEGYHLVE
Sbjct: 254 PDYSAYTPCEGYHLVE 269

[Close]

BLAST of CSPI04G27000.2 vs. NCBI nr
Match: XP_008452975.1 (PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 58  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 117

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE FQTYEHL
Sbjct: 118 QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHL 177

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VP+SGNMYSQRTDLSTEILSFDAQSNKGE MFQSFGSGHISQMTPIQNHRNNMSNDK NV
Sbjct: 178 VPQSGNMYSQRTDLSTEILSFDAQSNKGESMFQSFGSGHISQMTPIQNHRNNMSNDKTNV 237

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYS YTPCEGYHLVE
Sbjct: 238 PDYSAYTPCEGYHLVE 253

[Close]

BLAST of CSPI04G27000.2 vs. NCBI nr
Match: XP_038897857.1 (WUSCHEL-related homeobox 8-like [Benincasa hispida])

HSP 1 Score: 388.7 bits (997), Expect = 3.1e-104
Identity = 188/196 (95.92%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 145 MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 204

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANS+P+NADSEPETEVDSPKEKKTKPE FQTYEH 
Sbjct: 205 QHGQISEANVYNWFQNRRARSKRKQANSVPSNADSEPETEVDSPKEKKTKPETFQTYEHF 264

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPKSGN+YSQRTDLSTEI SFD QSNKGEPMFQSFGSGHISQMTPIQNHRNN+SNDKMNV
Sbjct: 265 VPKSGNIYSQRTDLSTEIHSFDVQSNKGEPMFQSFGSGHISQMTPIQNHRNNLSNDKMNV 324

Query: 181 PDYSPYTPCEGYHLVE 197
           PDYSPYTPCEGYHLVE
Sbjct: 325 PDYSPYTPCEGYHLVE 340

[Close]

BLAST of CSPI04G27000.2 vs. NCBI nr
Match: XP_022138301.1 (WUSCHEL-related homeobox 8-like isoform X2 [Momordica charantia])

HSP 1 Score: 370.9 bits (951), Expect = 6.7e-99
Identity = 183/197 (92.89%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 60
           MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT
Sbjct: 79  MRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLT 138

Query: 61  QHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHL 120
           QHGQISEANVYNWFQNRRARSKRKQANS PNNADSE ETEVDSPKEKKTKPEAFQTYE  
Sbjct: 139 QHGQISEANVYNWFQNRRARSKRKQANSQPNNADSEAETEVDSPKEKKTKPEAFQTYEDF 198

Query: 121 VPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHISQMTPIQNHRNNMSNDKMNV 180
           VPKS NMYSQR+DL  E LSFDAQSNKGEPMFQSFGSGHISQMTP QNHRNN+SNDKMNV
Sbjct: 199 VPKSSNMYSQRSDLGAEFLSFDAQSNKGEPMFQSFGSGHISQMTPTQNHRNNLSNDKMNV 258

Query: 181 P-DYSPYTPCEGYHLVE 197
           P DY+PY PCEGYHLVE
Sbjct: 259 PDDYTPYHPCEGYHLVE 275

[Close]

BLAST of CSPI04G27000.2 vs. TAIR 10
Match: AT4G35550.1 (WUSCHEL related homeobox 13 )

HSP 1 Score: 154.8 bits (390), Expect = 7.0e-38
Identity = 88/164 (53.66%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 2   RLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQ 61
           R+G LY DP+M S+ GHK+TARQRWTPTPVQLQILE+IFD+G GTPSKQKIKDIT +L+Q
Sbjct: 77  RMGGLYADPMM-SSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQ 136

Query: 62  HGQISEANVYNWFQNRRARSKRKQ---ANSLPNNADSEPETEVDSPKEKK-TKPEAF--- 121
           HGQI+E NVYNWFQNRRARSKRKQ    +S  NN +SE ETEV++  EK+  +PE+    
Sbjct: 137 HGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGL 196

Query: 122 ------------QTYEHLVPKSGNMYSQRTDLSTEILSFDAQSN 147
                        T     P+  ++  Q  ++S+++   D  SN
Sbjct: 197 PDGNSNNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSN 239

[Close]

BLAST of CSPI04G27000.2 vs. TAIR 10
Match: AT1G20700.1 (WUSCHEL related homeobox 14 )

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 7   YCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQIS 66
           Y DP+ AS++ H+I+ R RWTPT  QLQILE I+DEG+GTP++++I++I  +L++HGQI+
Sbjct: 77  YFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQIT 136

Query: 67  EANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLV 122
           E NVYNWFQNRRARSKRKQ  +   N  ++        +         ++YEH++
Sbjct: 137 ETNVYNWFQNRRARSKRKQPQTTTANGQADDVAVTTEERRSCGDSGGLESYEHIL 191

[Close]

BLAST of CSPI04G27000.2 vs. TAIR 10
Match: AT1G20710.1 (WUSCHEL related homeobox 10 )

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-26
Identity = 56/118 (47.46%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 7   YCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQIS 66
           Y DP++AS++ H ++ R RWTPT  QLQILE I+ EG+GTP+ ++IK+IT++L++HGQI 
Sbjct: 61  YFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIM 120

Query: 67  EANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPE---AFQTYEHLV 122
           E NVY+WFQNRRARSKRKQ  +    +    +  V + +E+    +    F++YEH++
Sbjct: 121 EKNVYHWFQNRRARSKRKQPPTTTITSSQADDAAVTTTEERGRCGDDSGGFESYEHIL 178

[Close]

BLAST of CSPI04G27000.2 vs. TAIR 10
Match: AT5G45980.1 (WUSCHEL related homeobox 8 )

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-12
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 23  RQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSK 82
           + RW P P Q++ILE IF+ G   P +++I+ I ++L ++GQI +ANV+ WFQNR++R+K
Sbjct: 53  KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAK 112

Query: 83  RK 85
            K
Sbjct: 113 HK 114

[Close]

BLAST of CSPI04G27000.2 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 20  ITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRA 79
           +    RW PTP QL++LE+++ +G  TPS   I+ IT QL ++G+I   NV+ WFQN +A
Sbjct: 71  VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKA 130

Query: 80  RSKRKQANSL 90
           R ++K+   +
Sbjct: 131 RERQKRRRQM 140

The following BLAST results are available for this feature:

BLAST of CSPI04G27000.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5QMM3	1.0e-41	54.49	WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX8 PE=2...	[more]
O81788	9.9e-37	53.66	WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana OX=3702 GN=WOX13 PE=2 SV=1	[more]
Q9LM84	2.7e-26	47.83	WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana OX=3702 GN=WOX14 PE=1 SV=1	[more]
Q9LM83	6.6e-25	47.46	Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana OX=3702 GN=WOX10 PE...	[more]
A2WWU7	1.4e-11	40.79	WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica OX=39946 GN=WOX5 PE=3 S...	[more]

BLAST of CSPI04G27000.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X4	6.5e-108	99.49	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G663700 PE...	[more]
A0A5A7VAN2	5.1e-105	97.45	WUSCHEL-related homeobox 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BUJ7	5.1e-105	97.45	WUSCHEL-related homeobox 8-like OS=Cucumis melo OX=3656 GN=LOC103493822 PE=4 SV=...	[more]
A0A6J1C9D0	3.2e-99	92.89	WUSCHEL-related homeobox 8-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IE07	8.0e-98	89.80	WUSCHEL-related homeobox 8-like OS=Cucurbita maxima OX=3661 GN=LOC111476380 PE=4...	[more]

BLAST of CSPI04G27000.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145546.1	1.3e-107	99.49	WUSCHEL-related homeobox 8 [Cucumis sativus]	[more]
KAA0064648.1	1.1e-104	97.45	WUSCHEL-related homeobox 8-like [Cucumis melo var. makuwa] >TYK19944.1 WUSCHEL-r...	[more]
XP_008452975.1	1.1e-104	97.45	PREDICTED: WUSCHEL-related homeobox 8-like [Cucumis melo]	[more]
XP_038897857.1	3.1e-104	95.92	WUSCHEL-related homeobox 8-like [Benincasa hispida]	[more]
XP_022138301.1	6.7e-99	92.89	WUSCHEL-related homeobox 8-like isoform X2 [Momordica charantia]	[more]

BLAST of CSPI04G27000.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35550.1	7.0e-38	53.66	WUSCHEL related homeobox 13	[more]
AT1G20700.1	1.9e-27	47.83	WUSCHEL related homeobox 14	[more]
AT1G20710.1	4.7e-26	47.46	WUSCHEL related homeobox 10	[more]
AT5G45980.1	2.3e-12	46.77	WUSCHEL related homeobox 8	[more]
AT3G18010.1	3.0e-12	41.43	WUSCHEL related homeobox 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 21..88 e-value: 4.6E-12 score: 56.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 23..83 e-value: 4.6E-18 score: 64.8
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 19..84 score: 14.495217
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 23..85 e-value: 1.825E-13 score: 60.3349
None	No IPR available	GENE3D	1.10.10.60		coord: 24..89 e-value: 5.7E-21 score: 75.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..112
None	No IPR available	PANTHER	PTHR46777:SF11	SUBFAMILY NOT NAMED	coord: 1..192
IPR044559	WUSCHEL-related homeobox 13-like	PANTHER	PTHR46777	WUSCHEL-RELATED HOMEOBOX 13	coord: 1..192
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 22..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G27000	CSPI04G27000	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G27000.2.utr5p1	CSPI04G27000.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G27000.2.cds1	CSPI04G27000.2.cds1	CDS
CSPI04G27000.2.cds2	CSPI04G27000.2.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G27000.2.utr3p1	CSPI04G27000.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G27000.2	CSPI04G27000.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity