CSPI04G22990.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI04G22990.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 21185827 .. 21186275 (-)
Sequence length449
RNA-Seq ExpressionCSPI04G22990.1
SyntenyCSPI04G22990.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACCAAAAAAGGAAACAAAACAAACAAAAAGAAATGAACTGAAATGCAAAAGCAAAAAAATGGGGTATGTCCAAAGCTTATCCATTTGATGCAAAACCAAAATCATTACAAATTTTACAAAATGGAGAAATGGGTTTTGTTAATGGATTCTCCCTCCTCATTACAATCCAATGAATTGCAGTGTGAATGAAAATGAAATCAAAAGCTTTAGGGTTTATAAAAATAATCCCAAAAAATGGGGGATGGCAGAGTGGGTCGTGACTCAAAAATGGGGGAAAACCCGAGTGGGGAAAGGGAAAGAGAAAGAGAAAAAGGGGCGAGAAGAAACGGTTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGAGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

mRNA sequence

AAAAACCAAAAAAGGAAACAAAACAAACAAAAAGAAATGAACTGAAATGCAAAAGCAAAAAAATGGGGTATGTCCAAAGCTTATCCATTTGATGCAAAACCAAAATCATTACAAATTTTACAAAATGGAGAAATGGGTTTTGTTAATGGATTCTCCCTCCTCATTACAATCCAATGAATTGCAGTGTGAATGAAAATGAAATCAAAAGCTTTAGGGTTTATAAAAATAATCCCAAAAAATGGGGGATGGCAGAGTGGGTCGTGACTCAAAAATGGGGGAAAACCCGAGTGGGGAAAGGGAAAGAGAAAGAGAAAAAGGGGCGAGAAGAAACGGTTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGAGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

Coding sequence (CDS)

ATGAATTGCAGTGTGAATGAAAATGAAATCAAAAGCTTTAGGGTTTATAAAAATAATCCCAAAAAATGGGGGATGGCAGAGTGGGTCGTGACTCAAAAATGGGGGAAAACCCGAGTGGGGAAAGGGAAAGAGAAAGAGAAAAAGGGGCGAGAAGAAACGGTTTTGGTGAGAGAAAAGGCGAGTACTTGTAGATGGGTTTTGCCATTTGTTGTACTTGAGGGAACTGTTCCCTTTCTCAAAGCTATCTTGCTTTCTTGGCTTGGTGACCAACCCTGA

Protein sequence

MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKASTCRWVLPFVVLEGTVPFLKAILLSWLGDQP*
Homology
[Close]
BLAST of CSPI04G22990.1 vs. ExPASy TrEMBL
Match: A0A0A0L228 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627780 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA 60
          MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA
Sbjct: 1  MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA 60

Query: 61 STCRWVLPFVVLEGTVPFLKAILLSWLGDQP 92
          STCRWVLPFVVLEGTVPFLKAILLSWLGDQP
Sbjct: 61 STCRWVLPFVVLEGTVPFLKAILLSWLGDQP 91

[Close]
BLAST of CSPI04G22990.1 vs. NCBI nr
Match: KGN55079.1 (hypothetical protein Csa_011998 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA 60
          MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA
Sbjct: 1  MNCSVNENEIKSFRVYKNNPKKWGMAEWVVTQKWGKTRVGKGKEKEKKGREETVLVREKA 60

Query: 61 STCRWVLPFVVLEGTVPFLKAILLSWLGDQP 92
          STCRWVLPFVVLEGTVPFLKAILLSWLGDQP
Sbjct: 61 STCRWVLPFVVLEGTVPFLKAILLSWLGDQP 91

The following BLAST results are available for this feature:
BLAST of CSPI04G22990.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G22990.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2281.3e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627780 PE=4 SV=1[more]
BLAST of CSPI04G22990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55079.12.6e-45100.00hypothetical protein Csa_011998 [Cucumis sativus][more]
BLAST of CSPI04G22990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G22990CSPI04G22990gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G22990.1.cds1CSPI04G22990.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G22990.1.utr5p1CSPI04G22990.1.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G22990.1CSPI04G22990.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane