CSPI04G22760.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI04G22760.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 21019772 .. 21020262 (+)
Sequence length	366
RNA-Seq Expression	CSPI04G22760.1
Synteny	CSPI04G22760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAGATCTTTGATGCAATTGCAACTACTGGCAGCAATAACCTTATCATTTTGAGGAAGCTTGTGGATGGTTACTTCCAAGGTGTCGAGAGCCATAATCGAATACATTCCTCATTTTTACTCCAATCAACTAAGGATGCTCAGTTAACAGAGACAAAAGGTTTTATGAAGACTCTGTGACTTGATGCGAGAATCGTATATTGGCAGAGACTAGTACCGTCAAACATCAACTTACACGACTATCTGCCAAGGAGGTTAAACTAGAGGCAAAACTAATGGTGGTGTGGACAGAGTGCACCAAACTTTTTGGCATAATTTTCAAGAACAACATGGAGCTGAAGCGGAAGCAGCATGAGATTTCAAAGACTTGTGAGAAAATTGACAAACTCGAATGTGCCCCAATCGTTGGAGATGTTGATGCTAAAATGCTATCAGCGGTTTGTGAATCTTTAGAAAAAGCACACACTAGAAGAGCTGAAGAACCTTAA

mRNA sequence

ATGCTTAAGATCTTTGATGCAATTGCAACTACTGGCAGCAATAACCTTATCATTTTGAGGAAGCTTGTGGATGGTTACTTCCAAGAGACTAGTACCGTCAAACATCAACTTACACGACTATCTGCCAAGGAGGTTAAACTAGAGGCAAAACTAATGGTGGTGTGGACAGAGTGCACCAAACTTTTTGGCATAATTTTCAAGAACAACATGGAGCTGAAGCGGAAGCAGCATGAGATTTCAAAGACTTGTGAGAAAATTGACAAACTCGAATGTGCCCCAATCGTTGGAGATGTTGATGCTAAAATGCTATCAGCGGTTTGTGAATCTTTAGAAAAAGCACACACTAGAAGAGCTGAAGAACCTTAA

Coding sequence (CDS)

ATGCTTAAGATCTTTGATGCAATTGCAACTACTGGCAGCAATAACCTTATCATTTTGAGGAAGCTTGTGGATGGTTACTTCCAAGAGACTAGTACCGTCAAACATCAACTTACACGACTATCTGCCAAGGAGGTTAAACTAGAGGCAAAACTAATGGTGGTGTGGACAGAGTGCACCAAACTTTTTGGCATAATTTTCAAGAACAACATGGAGCTGAAGCGGAAGCAGCATGAGATTTCAAAGACTTGTGAGAAAATTGACAAACTCGAATGTGCCCCAATCGTTGGAGATGTTGATGCTAAAATGCTATCAGCGGTTTGTGAATCTTTAGAAAAAGCACACACTAGAAGAGCTGAAGAACCTTAA

Protein sequence

MLKIFDAIATTGSNNLIILRKLVDGYFQETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEISKTCEKIDKLECAPIVGDVDAKMLSAVCESLEKAHTRRAEEP*

Homology

[Close]

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL
Match: A0A5A7SWI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1735G00170 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 86/152 (56.58%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIATSGSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLIEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+  L RLSAKE KLEAKL  V TE TKL GII KN +ELK+KQHEI
Sbjct: 61  RVDENRILEETSTVQRCLARLSAKEAKLEAKLKAVRTEFTKLSGIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL
Match: A0A5D3DE43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold836G00150 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 86/152 (56.58%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIATSGSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLIEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+  L RLSAKE KLEAKL  V TE TKL GII KN +ELK+KQHEI
Sbjct: 61  RVDENRILEETSTVQRCLARLSAKEAKLEAKLKAVRTEFTKLSGIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL
Match: A0A1S4E6N4 (uncharacterized protein LOC103504169 OS=Cucumis melo OX=3656 GN=LOC103504169 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 86/152 (56.58%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIATSGSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLIEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+  L RLSAKE KLEAKL  V TE TKL GII KN +ELK+KQHEI
Sbjct: 61  RVDENRILEETSTVQRCLARLSAKEAKLEAKLKAVRTEFTKLSGIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL
Match: A0A5A7UZR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00580 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.4e-28
Identity = 82/152 (53.95%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIA +GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIAISGSNNLTFLKELVDGYFQGVENHNQMCFSILLQSTKDAQLMEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+ +L RLSAKE KLEAKL VV TE TKL  II KN +ELK+KQHEI
Sbjct: 61  RLDENCILEETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL
Match: A0A5A7SJ85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00030 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+ SNNL  L++LVDGYFQ                                
Sbjct: 229 MRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTL 288

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+ +L RLSAKE KLEAKL VV TE TKL G+I KN +ELK+KQ EI
Sbjct: 289 RLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREI 348

[Close]

BLAST of CSPI04G22760.1 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 9.7e-32
Identity = 85/152 (55.92%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIFDAIAT+GS+NLI+LR+LV+GYFQ                                
Sbjct: 836 MHKIFDAIATSGSDNLIVLRELVNGYFQGVENHNQIHSSFLLQSTKDVQLTEAKGFVKTL 895

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ET+T K +LTRLSAKE KLEAKL +V  E  KL GIIFKN++ELK+KQHEI
Sbjct: 896 RVDENRILAETNTAKRRLTRLSAKEAKLEAKLKMVRAESAKLSGIIFKNDLELKQKQHEI 955

[Close]

BLAST of CSPI04G22760.1 vs. NCBI nr
Match: XP_016903650.1 (PREDICTED: uncharacterized protein LOC103504169 [Cucumis melo] >KAA0033821.1 uncharacterized protein E6C27_scaffold1735G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 86/152 (56.58%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIATSGSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLIEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+  L RLSAKE KLEAKL  V TE TKL GII KN +ELK+KQHEI
Sbjct: 61  RVDENRILEETSTVQRCLARLSAKEAKLEAKLKAVRTEFTKLSGIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. NCBI nr
Match: TYK21862.1 (uncharacterized protein E5676_scaffold836G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 86/152 (56.58%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIATSGSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLIEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+  L RLSAKE KLEAKL  V TE TKL GII KN +ELK+KQHEI
Sbjct: 61  RVDENRILEETSTVQRCLARLSAKEAKLEAKLKAVRTEFTKLSGIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. NCBI nr
Match: KAA0060137.1 (uncharacterized protein E6C27_scaffold39G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 82/152 (53.95%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIA +GSNNL  L++LVDGYFQ                                
Sbjct: 1   MRKIFAAIAISGSNNLTFLKELVDGYFQGVENHNQMCFSILLQSTKDAQLMEAKGFVKTL 60

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+ +L RLSAKE KLEAKL VV TE TKL  II KN +ELK+KQHEI
Sbjct: 61  RLDENCILEETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSDIISKNEIELKQKQHEI 120

[Close]

BLAST of CSPI04G22760.1 vs. NCBI nr
Match: KAA0025724.1 (uncharacterized protein E6C27_scaffold653G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MLKIFDAIATTGSNNLIILRKLVDGYFQ-------------------------------- 60
           M KIF AIAT+ SNNL  L++LVDGYFQ                                
Sbjct: 229 MRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTL 288

Query: 61  ---------ETSTVKHQLTRLSAKEVKLEAKLMVVWTECTKLFGIIFKNNMELKRKQHEI 112
                    ETSTV+ +L RLSAKE KLEAKL VV TE TKL G+I KN +ELK+KQ EI
Sbjct: 289 RLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREI 348

The following BLAST results are available for this feature:

BLAST of CSPI04G22760.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G22760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWI5	1.2e-30	56.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DE43	1.2e-30	56.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E6N4	1.2e-30	56.58	uncharacterized protein LOC103504169 OS=Cucumis melo OX=3656 GN=LOC103504169 PE=...	[more]
A0A5A7UZR8	5.4e-28	53.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SJ85	1.6e-27	53.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI04G22760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745312.1	9.7e-32	55.92	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
XP_016903650.1	2.4e-30	56.58	PREDICTED: uncharacterized protein LOC103504169 [Cucumis melo] >KAA0033821.1 unc...	[more]
TYK21862.1	2.4e-30	56.58	uncharacterized protein E5676_scaffold836G00150 [Cucumis melo var. makuwa]	[more]
KAA0060137.1	1.1e-27	53.95	uncharacterized protein E6C27_scaffold39G00580 [Cucumis melo var. makuwa]	[more]
KAA0025724.1	3.2e-27	53.29	uncharacterized protein E6C27_scaffold653G00030 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G22760.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G22760	CSPI04G22760	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G22760.1.cds1	CSPI04G22760.1.cds1	CDS
CSPI04G22760.1.cds2	CSPI04G22760.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G22760.1	CSPI04G22760.1-protein	polypeptide