CSPI04G20350.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI04G20350.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 18476114 .. 18476323 (-)
Sequence length210
RNA-Seq ExpressionCSPI04G20350.1
SyntenyCSPI04G20350.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAGCTGTTGGATGCTACACGGTTCGTATCTGAACGACGAGCGTCGGCAGAACTACACACGAACGAAACGCGGGCTCGGCTGGGTTTGGCTTCAACGGAGACAGAGACGATTGGGACGGGGCTACCGGTGGGGACACGAGGTTGCAAATCTGGACGACGGCGCAGAGAGACACGGCGGTTACAGGCGGATGGGCGTGGAGGTTTAA

mRNA sequence

ATGCGCAGCTGTTGGATGCTACACGGTTCGTATCTGAACGACGAGCGTCGGCAGAACTACACACGAACGAAACGCGGGCTCGGCTGGGTTTGGCTTCAACGGAGACAGAGACGATTGGGACGGGGCTACCGGTGGGGACACGAGGTTGCAAATCTGGACGACGGCGCAGAGAGACACGGCGGTTACAGGCGGATGGGCGTGGAGGTTTAA

Coding sequence (CDS)

ATGCGCAGCTGTTGGATGCTACACGGTTCGTATCTGAACGACGAGCGTCGGCAGAACTACACACGAACGAAACGCGGGCTCGGCTGGGTTTGGCTTCAACGGAGACAGAGACGATTGGGACGGGGCTACCGGTGGGGACACGAGGTTGCAAATCTGGACGACGGCGCAGAGAGACACGGCGGTTACAGGCGGATGGGCGTGGAGGTTTAA

Protein sequence

MRSCWMLHGSYLNDERRQNYTRTKRGLGWVWLQRRQRRLGRGYRWGHEVANLDDGAERHGGYRRMGVEV*
Homology
[Close]
BLAST of CSPI04G20350.1 vs. NCBI nr
Match: KAE8649722.1 (hypothetical protein Csa_012496, partial [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 9.8e-29
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 1  MRSCWMLHGSYLNDERRQNYTRTKRGLGWVWLQRRQRRLGRGYRWGHEVANLDDGAERHG 60
          MRSCWMLHGSYLNDERRQNYTRTKRGLGWVWLQR QRRLGRGY WGHE+ANLDD  ERHG
Sbjct: 1  MRSCWMLHGSYLNDERRQNYTRTKRGLGWVWLQRTQRRLGRGYWWGHEIANLDDDPERHG 60

Query: 61 GYRRMG 67
          GYRRMG
Sbjct: 61 GYRRMG 66

[Close]
BLAST of CSPI04G20350.1 vs. NCBI nr
Match: KAE8637341.1 (hypothetical protein CSA_000012 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-11
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 1  MRSCWMLHGSYLNDERRQNYTRTKRGLGWVWLQRRQRRLGRGYRWGHEVANLDDGAERHG 60
          M +CWMLHGSYLNDERRQNY        W         LGRGYRWGH VA+LD+G ERHG
Sbjct: 1  MHNCWMLHGSYLNDERRQNY--------WDGATGGDTALGRGYRWGHGVADLDNGTERHG 52

The following BLAST results are available for this feature:
BLAST of CSPI04G20350.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G20350.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G20350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649722.19.8e-2992.42hypothetical protein Csa_012496, partial [Cucumis sativus][more]
KAE8637341.19.2e-1161.67hypothetical protein CSA_000012 [Cucumis sativus][more]
BLAST of CSPI04G20350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G20350CSPI04G20350gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G20350.1.cds1CSPI04G20350.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G20350.1CSPI04G20350.1-proteinpolypeptide